MD13G1086500.v1.1

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0001842
Physical Location & Seq
Forward (+)
6083924 .. 6085095
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1086500.v1.1.491

Sequence Viewer

Length: 327 bp
ATGTCGTCACGCTTGCTTCTCGTTGTGGCGGTTTTGCTCTTCGGCCGCATGGCGGTGGTTTCGTCTGAACATTCTACCATTGAAGACCATGAAACGCAGGCGGTGGTGAAAGGAGCTAACAGAAGGCTTTTACCATTCCTGAACTGTGAAGGGTTGTGCAATCAGAGGTGCAGTAAGCACTCGAGGCCAAACGTGTGCACGAGGGCATGTGGGACCTGCTGCATGAGGTGCAAGTGTGTTCCTCCCGGCACCGCCGGCAACAGAGAAGCCTGCGGGACCTGCTACACTGATATGACTACTCACCACCACCGCATCAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

109

Amino Acids

11.88

Weight (kDa)

8.94

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 48 - 108 3.1e-20 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 224, 287
AccB1I GGYRCC 1 cut(s) 248
AciI CCGC 7 cut(s) 29, 46, 53, 101, 252, 273, 310
AcoI YGGCCR 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 83
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw21I GWGCWC 1 cut(s) 200
Alw44I GTGCAC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 2 cut(s) 43, 185
ApaLI GTGCAC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 213, 276
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 2 cut(s) 118, 293
AvaI CYCGRG 1 cut(s) 181
AvaII GGWCC 2 cut(s) 213, 276
BaeGI GKGCMC 2 cut(s) 200, 323
BanI GGYRCC 1 cut(s) 248
BauI CACGAG 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 206
BcnI CCSGG 1 cut(s) 246
BfuAI ACCTGC 2 cut(s) 224, 287
BisI GCNGC 2 cut(s) 46, 220
BlsI GCNGC 2 cut(s) 47, 221
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 2 cut(s) 213, 276
BmeT110I CYCGRG 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 213, 276
BmiI GGNNCC 3 cut(s) 214, 250, 277
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 52
BseSI GKGCMC 2 cut(s) 200, 323
BseX3I CGGCCG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 2 cut(s) 45, 187
BshNI GGYRCC 1 cut(s) 248
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 2 cut(s) 246, 255
BslFI GGGAC 2 cut(s) 226, 289
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 226, 289
BsnI GGCC 2 cut(s) 45, 187
BsoBI CYCGRG 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 200, 323
BspACI CCGC 7 cut(s) 29, 46, 53, 101, 252, 273, 310
BspANI GGCC 2 cut(s) 45, 187
BspLI GGNNCC 3 cut(s) 214, 250, 277
BspMI ACCTGC 2 cut(s) 224, 287
BspQI GCTCTTC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssSI CACGAG 1 cut(s) 199
Bst2BI CACGAG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 44
BstAPI GCANNNNNTGC 2 cut(s) 228, 318
BstC8I GCNNGC 4 cut(s) 14, 99, 256, 271
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 5 cut(s) 184, 228, 255, 279, 318
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 244
BstSLI GKGCMC 2 cut(s) 200, 323
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 90
BstZI CGGCCG 1 cut(s) 43
BsuRI GGCC 2 cut(s) 45, 187
BtsIMutI CAGTG 1 cut(s) 285
BveI ACCTGC 2 cut(s) 224, 287
Cac8I GCNNGC 4 cut(s) 14, 99, 256, 271
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 213, 276
CviAII CATG 4 cut(s) 49, 89, 207, 223
CviJI RGCY 5 cut(s) 45, 116, 127, 187, 269
CviKI_1 RGCY 5 cut(s) 45, 116, 127, 187, 269
EaeI YGGCCR 1 cut(s) 43
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EclXI CGGCCG 1 cut(s) 43
Eco47I GGWCC 2 cut(s) 213, 276
Eco52I CGGCCG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 181
EcoO109I RGGNCCY 2 cut(s) 213, 276
FaeI CATG 4 cut(s) 52, 92, 210, 226
FaiI YATR 5 cut(s) 50, 90, 208, 224, 293
FaqI GGGAC 2 cut(s) 226, 289
FatI CATG 4 cut(s) 48, 88, 206, 222
FauI CCCGC 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 46, 220
Fsp4HI GCNGC 2 cut(s) 46, 220
GluI GCNGC 2 cut(s) 46, 220
HaeIII GGCC 2 cut(s) 45, 187
HapII CCGG 2 cut(s) 246, 255
Hin1II CATG 4 cut(s) 52, 92, 210, 226
HpaII CCGG 2 cut(s) 246, 255
HphI GGTGA 2 cut(s) 118, 293
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 2 cut(s) 67, 165
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 2 cut(s) 117, 143
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 5 cut(s) 159, 171, 198, 222, 231
HpyF10VI GCNNNNNNNGC 5 cut(s) 184, 228, 255, 279, 318
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 4 cut(s) 52, 92, 210, 226
KroI GCCGGC 1 cut(s) 254
KroNI GCCGGC 1 cut(s) 256
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 7 cut(s) 83, 152, 229, 259, 268, 283, 292
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 321
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 6
MboII GAAGA 2 cut(s) 31, 95
MhlI GDGCHC 2 cut(s) 200, 323
MnlI CCTC 5 cut(s) 159, 177, 195, 219, 252
MroNI GCCGGC 1 cut(s) 254
MseI TTAA 1 cut(s) 325
MslI CAYNNNNRTG 2 cut(s) 53, 290
MspI CCGG 2 cut(s) 246, 255
MspR9I CCNGG 1 cut(s) 246
MwoI GCNNNNNNNGC 5 cut(s) 184, 228, 255, 279, 318
NaeI GCCGGC 1 cut(s) 256
NciI CCSGG 1 cut(s) 246
NgoMIV GCCGGC 1 cut(s) 254
NlaIII CATG 4 cut(s) 52, 92, 210, 226
NlaIV GGNNCC 3 cut(s) 214, 250, 277
NmuCI GTSAC 1 cut(s) 6
NspI RCATGY 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 44
PdiI GCCGGC 1 cut(s) 256
PkrI GCNGC 2 cut(s) 47, 221
PpuMI RGGWCCY 2 cut(s) 213, 276
Psp5II RGGWCCY 2 cut(s) 213, 276
PspN4I GGNNCC 3 cut(s) 214, 250, 277
PspPI GGNCC 2 cut(s) 213, 276
PspPPI RGGWCCY 2 cut(s) 213, 276
PspXI VCTCGAGB 1 cut(s) 181
RseI CAYNNNNRTG 2 cut(s) 53, 290
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 2 cut(s) 46, 220
Sau96I GGNCC 2 cut(s) 213, 276
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 2 cut(s) 200, 323
SetI ASST 6 cut(s) 118, 170, 195, 218, 230, 281
SfaNI GCATC 1 cut(s) 321
Sfr274I CTCGAG 1 cut(s) 181
SinI GGWCC 2 cut(s) 213, 276
SlaI CTCGAG 1 cut(s) 181
SmiMI CAYNNNNRTG 2 cut(s) 53, 290
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
SsiI CCGC 7 cut(s) 29, 46, 53, 101, 252, 273, 310
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 182
TauI GCSGC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 292
VneI GTGCAC 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 213, 276
XceI RCATGY 1 cut(s) 210
XhoI CTCGAG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.