Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001842

Physical Location & Seq

Genomic Coordinates Reverse (-)

25585723 .. 25587226

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G279800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTGCTTACAAAGCCATTCTCCTTCTACTTGCTGCTCTTCTCTTTGTTACTACAAGGGCTTCTTCTTCATCAGTTGAGCATCATGAAGAAGAAGAACTGAAGTTAAAGGCTGCTTATTCCAAAGTCCTAGTACCTGCACCAGCTCCTCCTAAGCTTCCAATAGTCAAGGCACCGGCTCCACCACCCCTGGTCAAGGCTCCAGCTCCACCTGTTCCAGTGATCAAGCCACCCAGTCCACCACCTCTTCCAGTGATTAAGCCACCCAGTCCACCACCTGTTCCAGTAATCAAGCCACCCAGTCCATCACCAGTTCCAGTGATCAAGCCGCCCACTCCACCACCAGCTCCAGTTGTCAAGCCACCCACTCCACCAACTCCTGTCAGTCCTCTGCCCCCAGTGAAGCCACCCACTTACCCACCACTGCCCCCAGTTAAATCCAAAGAGGATTGCATCCCTTTGTGTGACAAGAGGTGCCAATTACACTCAAGGAAGAGAGTCTGCATGAGAGCTTGCATGACATGCTGTGACCGCTGCAGATGTGTTCCTCCCGGAACTTTTGGCAACCGGGAAAGATGTGGCAAGTGCTACACTGATATGGTCACCCATGGAAACAGAAGCAAGTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

211

Amino Acids

22.43

Weight (kDa)

9.65

Isoelectric Point (pI)

85.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14940 FvH4_4g35060 FvH4_6g50260 FvH4_6g50260
malus_domestica	MD09G1038100.v1.1 MD13G1086500.v1.1 MD16G1086000.v1.1 MD17G1039200.v1.1 MD17G1039400.v1.1
prunus_persica	Prupe.1G260200_v2.0.a1 Prupe.1G260200_v2.0.a1 Prupe.3G279800_v2.0.a1 Prupe.5G178400_v2.0.a1
pyrus_communis	pycom13g07470 pycom17g03540
rosa_chinensis	RchiOBHm_Chr2g0170521 RchiOBHm_Chr4g0444681
rosa_laevigata	RLG00000002282 RLG00000005815 RLG00000021964
rosa_multiflora	Rmu_co8502627.1_g000001 Rmu_sc0000172.1_g000002 Rmu_sc0009395.1_g000002 Rmu_sc0009395.1_g000011 Rmu_sc0010307.1_g000007
rosa_roxburghii	Rroxscaffold_2G00081220 Rroxscaffold_5G00385120 Rroxscaffold_7G00211030
rosa_rugosa	Rorug02G0548900 Rorug02G0548900 Rorug02G0549700 Rorug02G0549700 Rorug04G0354300
rosa_samantha	Rh1BG166100 Rh1DG196900 Rh2AG620900 Rh2BG632000 Rh2CG601600 Rh2CG602200 Rh2DG644700 Rh4AG414400 Rh4BG426100 Rh4CG441000 Rh4DG422000
rosa_wichuraiana	Rw2G051480 Rw2G051530 Rw4G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AccB1I	GGYRCC	2 cut(s)	172, 474
AciI	CCGC	2 cut(s)	329, 532
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	5 cut(s)	146, 157, 206, 347, 512
AluI	AGCT	5 cut(s)	146, 157, 206, 347, 512
ApeKI	GCWGC	4 cut(s)	5, 35, 113, 534
AsuC2I	CCSGG	2 cut(s)	552, 569
AsuHPI	GGTGA	2 cut(s)	300, 595
BaeGI	GKGCMC	1 cut(s)	629
BanI	GGYRCC	2 cut(s)	172, 474
BbvI	GCAGC	3 cut(s)	22, 100, 521
BccI	CCATC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	2 cut(s)	222, 321
BcnI	CCSGG	2 cut(s)	552, 569
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	535
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	5 cut(s)	6, 36, 114, 329, 535
BlsI	GCNGC	5 cut(s)	7, 37, 115, 330, 536
Bme1390I	CCNGG	3 cut(s)	191, 552, 569
BmiI	GGNNCC	4 cut(s)	174, 180, 201, 476
BmrFI	CCNGG	3 cut(s)	191, 552, 569
BmrI	ACTGGG	5 cut(s)	228, 261, 294, 392, 425
BmsI	GCATC	2 cut(s)	91, 462
BmuI	ACTGGG	5 cut(s)	228, 261, 294, 392, 425
BpmI	CTGGAG	2 cut(s)	186, 333
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	472
BpuMI	CCSGG	2 cut(s)	552, 569
BsaJI	CCNNGG	2 cut(s)	189, 607
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	189, 607
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	3 cut(s)	22, 100, 521
BsgI	GTGCAG	1 cut(s)	123
BshNI	GGYRCC	2 cut(s)	172, 474
BsiSI	CCGG	3 cut(s)	176, 552, 568
BslI	CCNNNNNNNGG	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp143I	GATC	2 cut(s)	222, 321
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	2 cut(s)	329, 532
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	4 cut(s)	174, 180, 201, 476
BspMAI	CTGCAG	1 cut(s)	539
BspMI	ACCTGC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	45
BspT107I	GGYRCC	2 cut(s)	172, 474
BsrFI	RCCGGY	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	189, 607
BssMI	GATC	2 cut(s)	222, 321
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	1 cut(s)	191
Bst6I	CTCTTC	3 cut(s)	45, 252, 488
BstAPI	GCANNNNNTGC	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	607
BstEII	GGTNACC	1 cut(s)	601
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	453
BstKTI	GATC	2 cut(s)	225, 324
BstMBI	GATC	2 cut(s)	222, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 522, 531
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	525
BstPI	GGTNACC	1 cut(s)	601
BstSCI	CCNGG	3 cut(s)	189, 550, 567
BstSFI	CTRYAG	1 cut(s)	535
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	3 cut(s)	22, 100, 521
BtgI	CCRYGG	1 cut(s)	607
BtsCI	GGATG	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	6 cut(s)	225, 258, 324, 405, 422, 591
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	514
CciI	TCATGA	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	5 cut(s)	86, 505, 517, 522, 608
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	224, 323
DpnII	GATC	2 cut(s)	222, 321
Eam1104I	CTCTTC	3 cut(s)	45, 252, 488
EarI	CTCTTC	3 cut(s)	45, 252, 488
Eco130I	CCWWGG	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	122
Eco91I	GGTNACC	1 cut(s)	601
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoO65I	GGTNACC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	5 cut(s)	89, 508, 520, 525, 611
FaiI	YATR	6 cut(s)	87, 506, 518, 523, 599, 609
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	5 cut(s)	85, 504, 516, 521, 607
FbaI	TGATCA	2 cut(s)	222, 321
Fnu4HI	GCNGC	5 cut(s)	6, 36, 114, 329, 535
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	5 cut(s)	6, 36, 114, 329, 535
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	5 cut(s)	6, 36, 114, 329, 535
GsuI	CTGGAG	2 cut(s)	186, 333
HapII	CCGG	3 cut(s)	176, 552, 568
Hin1II	CATG	5 cut(s)	89, 508, 520, 525, 611
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	498
HpaII	CCGG	3 cut(s)	176, 552, 568
HphI	GGTGA	2 cut(s)	300, 595
Hpy166II	GTNNAC	2 cut(s)	239, 272
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	2 cut(s)	239, 272
HpyAV	CCTTC	1 cut(s)	35
HpyCH4V	TGCA	5 cut(s)	140, 453, 504, 516, 537
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 522, 531
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	5 cut(s)	89, 508, 520, 525, 611
Ksp22I	TGATCA	2 cut(s)	222, 321
Kzo9I	GATC	2 cut(s)	222, 321
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	5 cut(s)	151, 184, 205, 211, 352
Lsp1109I	GCAGC	3 cut(s)	22, 100, 521
LweI	GCATC	2 cut(s)	91, 462
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	4 cut(s)	49, 464, 527, 601
MalI	GATC	2 cut(s)	224, 323
MboI	GATC	2 cut(s)	222, 321
MboII	GAAGA	8 cut(s)	32, 57, 60, 101, 104, 107, 239, 505
MhlI	GDGCHC	1 cut(s)	629
MluCI	AATT	1 cut(s)	479
MlyI	GAGTC	1 cut(s)	507
MnlI	CCTC	6 cut(s)	159, 255, 399, 439, 465, 558
MseI	TTAA	3 cut(s)	107, 258, 435
MslI	CAYNNNNRTG	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	534
MspI	CCGG	3 cut(s)	176, 552, 568
MspR9I	CCNGG	3 cut(s)	191, 552, 569
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	14, 522, 531
NciI	CCSGG	2 cut(s)	552, 569
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	2 cut(s)	222, 321
NlaIII	CATG	5 cut(s)	89, 508, 520, 525, 611
NlaIV	GGNNCC	4 cut(s)	174, 180, 201, 476
NmuCI	GTSAC	3 cut(s)	464, 527, 601
NspI	RCATGY	1 cut(s)	525
PagI	TCATGA	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	550
PkrI	GCNGC	5 cut(s)	7, 37, 115, 330, 536
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	189
PspEI	GGTNACC	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	4 cut(s)	174, 180, 201, 476
PstI	CTGCAG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	596
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	107, 258, 435
SatI	GCNGC	5 cut(s)	6, 36, 114, 329, 535
Sau3AI	GATC	2 cut(s)	222, 321
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	3 cut(s)	191, 552, 569
SduI	GDGCHC	1 cut(s)	629
SfaNI	GCATC	2 cut(s)	91, 462
SfcI	CTRYAG	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	1 cut(s)	479
SsiI	CCGC	2 cut(s)	329, 532
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	3 cut(s)	189, 550, 567
StyI	CCWWGG	1 cut(s)	607
TasI	AATT	1 cut(s)	479
TauI	GCSGC	1 cut(s)	331
Tru1I	TTAA	3 cut(s)	107, 258, 435
Tru9I	TTAA	3 cut(s)	107, 258, 435
TscAI	CASTG	6 cut(s)	225, 258, 324, 405, 429, 598
TseFI	GTSAC	3 cut(s)	464, 527, 601
TseI	GCWGC	4 cut(s)	5, 35, 113, 534
Tsp45I	GTSAC	3 cut(s)	464, 527, 601
TspDTI	ATGAA	2 cut(s)	60, 102
TspRI	CASTG	6 cut(s)	225, 258, 324, 405, 429, 598
XagI	CCTNNNNNAGG	1 cut(s)	194
XceI	RCATGY	1 cut(s)	525
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.