Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001842

Physical Location & Seq

Genomic Coordinates Forward (+)

4968540 .. 4969358

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTCGTCACGCTTGCTTCTCGTTGTGGCGGTTTTGCTCTTCGGCTGCATGGCGGTGGTTCCGTCTCAACATTCTACCATTGAAGACCATGAAACGCAGGCGGTGGTGAAAGGAGCTAACAGAAGGCTTTTACCATTCCTGAACTGTGAAGGGTTGTGCAATCAGAGGTGCAGTAAGCACTCGAGGCCAAACGTGTGCACGAGGGCATGTGGGACCTGTTGCATGAGGTGCAAGTGTGTTCCTCCCGGCACCGCCGGCAACAGAGAAGCCTGCGGGACCTGCTACACTGATATGACTACTCACCACCACCACATCAAGTGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

109

Amino Acids

11.81

Weight (kDa)

8.76

Isoelectric Point (pI)

59.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14940 FvH4_4g35060 FvH4_6g50260 FvH4_6g50260
malus_domestica	MD09G1038100.v1.1 MD13G1086500.v1.1 MD16G1086000.v1.1 MD17G1039200.v1.1 MD17G1039400.v1.1
prunus_persica	Prupe.1G260200_v2.0.a1 Prupe.1G260200_v2.0.a1 Prupe.3G279800_v2.0.a1 Prupe.5G178400_v2.0.a1
pyrus_communis	pycom13g07470 pycom17g03540
rosa_chinensis	RchiOBHm_Chr2g0170521 RchiOBHm_Chr4g0444681
rosa_laevigata	RLG00000002282 RLG00000005815 RLG00000021964
rosa_multiflora	Rmu_co8502627.1_g000001 Rmu_sc0000172.1_g000002 Rmu_sc0009395.1_g000002 Rmu_sc0009395.1_g000011 Rmu_sc0010307.1_g000007
rosa_roxburghii	Rroxscaffold_2G00081220 Rroxscaffold_5G00385120 Rroxscaffold_7G00211030
rosa_rugosa	Rorug02G0548900 Rorug02G0548900 Rorug02G0549700 Rorug02G0549700 Rorug04G0354300
rosa_samantha	Rh1BG166100 Rh1DG196900 Rh2AG620900 Rh2BG632000 Rh2CG601600 Rh2CG602200 Rh2DG644700 Rh4AG414400 Rh4BG426100 Rh4CG441000 Rh4DG422000
rosa_wichuraiana	Rw2G051480 Rw2G051530 Rw4G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	248
AciI	CCGC	5 cut(s)	29, 53, 101, 252, 273
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	83
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	69
Alw44I	GTGCAC	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	1 cut(s)	185
ApaLI	GTGCAC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	213, 276
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	118, 293
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	2 cut(s)	213, 276
BaeGI	GKGCMC	2 cut(s)	200, 323
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	2 cut(s)	213, 276
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	213, 276
BmiI	GGNNCC	4 cut(s)	60, 214, 250, 277
BmrFI	CCNGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	246
Bse118I	RCCGGY	1 cut(s)	254
BseSI	GKGCMC	2 cut(s)	200, 323
BseXI	GCAGC	1 cut(s)	32
BsgI	GTGCAG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	246, 255
BslFI	GGGAC	2 cut(s)	226, 289
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	226, 289
BsnI	GGCC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	200, 323
BspACI	CCGC	5 cut(s)	29, 53, 101, 252, 273
BspANI	GGCC	1 cut(s)	187
BspLI	GGNNCC	4 cut(s)	60, 214, 250, 277
BspMI	ACCTGC	1 cut(s)	287
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssSI	CACGAG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstC8I	GCNNGC	4 cut(s)	14, 99, 256, 271
BstMAI	GTCTC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	4 cut(s)	184, 228, 255, 279
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	244
BstSLI	GKGCMC	2 cut(s)	200, 323
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	4 cut(s)	14, 99, 256, 271
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	213, 276
CviAII	CATG	4 cut(s)	49, 89, 207, 223
CviJI	RGCY	5 cut(s)	45, 116, 127, 187, 269
CviKI_1	RGCY	5 cut(s)	45, 116, 127, 187, 269
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	213, 276
Eco88I	CYCGRG	1 cut(s)	181
EcoO109I	RGGNCCY	2 cut(s)	213, 276
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	4 cut(s)	52, 92, 210, 226
FaiI	YATR	5 cut(s)	50, 90, 208, 224, 293
FaqI	GGGAC	2 cut(s)	226, 289
FatI	CATG	4 cut(s)	48, 88, 206, 222
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	2 cut(s)	246, 255
Hin1II	CATG	4 cut(s)	52, 92, 210, 226
HpaII	CCGG	2 cut(s)	246, 255
HphI	GGTGA	2 cut(s)	118, 293
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	2 cut(s)	117, 143
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	6 cut(s)	48, 159, 171, 198, 222, 231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	184, 228, 255, 279
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	52, 92, 210, 226
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	7 cut(s)	83, 152, 229, 259, 268, 283, 292
Lsp1109I	GCAGC	1 cut(s)	32
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	6
MboII	GAAGA	2 cut(s)	31, 95
MhlI	GDGCHC	2 cut(s)	200, 323
MnlI	CCTC	5 cut(s)	159, 177, 195, 219, 252
MroNI	GCCGGC	1 cut(s)	254
MseI	TTAA	1 cut(s)	325
MslI	CAYNNNNRTG	2 cut(s)	53, 290
MspI	CCGG	2 cut(s)	246, 255
MspR9I	CCNGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	4 cut(s)	184, 228, 255, 279
NaeI	GCCGGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	246
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	4 cut(s)	52, 92, 210, 226
NlaIV	GGNNCC	4 cut(s)	60, 214, 250, 277
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	47
PpuMI	RGGWCCY	2 cut(s)	213, 276
Psp5II	RGGWCCY	2 cut(s)	213, 276
PspN4I	GGNNCC	4 cut(s)	60, 214, 250, 277
PspPI	GGNCC	2 cut(s)	213, 276
PspPPI	RGGWCCY	2 cut(s)	213, 276
PspXI	VCTCGAGB	1 cut(s)	181
RseI	CAYNNNNRTG	2 cut(s)	53, 290
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	325
SatI	GCNGC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	213, 276
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	200, 323
SetI	ASST	6 cut(s)	118, 170, 195, 218, 230, 281
Sfr274I	CTCGAG	1 cut(s)	181
SinI	GGWCC	2 cut(s)	213, 276
SlaI	CTCGAG	1 cut(s)	181
SmiMI	CAYNNNNRTG	2 cut(s)	53, 290
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SsiI	CCGC	5 cut(s)	29, 53, 101, 252, 273
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	325
Tru9I	TTAA	1 cut(s)	325
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	292
VneI	GTGCAC	1 cut(s)	196
VpaK11BI	GGWCC	2 cut(s)	213, 276
XceI	RCATGY	1 cut(s)	210
XhoI	CTCGAG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.