RchiOBHm_Chr2g0170521

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001842
Physical Location & Seq
Reverse (-)
84464028 .. 84466219
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53803

Sequence Viewer

Length: 612 bp
ATGGCTCTCAAAGCCTTCCTCCTACTCTTGGCCACCGTTCTCTTTGCTATCACAACGGCTTCATCTCATGATCTCCATGAGGAACTCAAGATAAAGGCGGCTTATGTCCAAAGCCAAGCACCACCACCACTTCCAATCGTCAAAGCTCCGGCTCCACCACCTCTAGTGACCAAGCCACCCATAGTTCCTGTGCCTCCAGTGGTGAGGCCACCTACTTATGCTCCACCGCCAAAAGTGATCAAGGCACCCCCTCCAGCACCACCTGTAGCTCCTGTGCCTCCAGTGAAGCCACCTACTTATGCTCCACCACCAAAAGTGGTCAAGGCACCCCCTCCAGCTCCACCTCTACCCAAGCCACCAGTTCCTGCGCCTCCAGTGAAGCCTCCCACCTATGCTCCACCACTTCCCCCAGTCAAATCCAAAAAGGATTGCGTTCCATTGTGTGAACAAAGGTGCGCTTTGCATTCGAGGAAGAGGACGTGCATGAGGGCTTGCATGACATGCTGTGACCGCTGCAAATGCGTGCCCCCGGGAACTTCCGGCAACCGGGAAAGATGCGGCAAGTGCTACACTGAGATGACCACCCACGGCAACAGATCCAAGTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

203

Amino Acids

21.61

Weight (kDa)

9.76

Isoelectric Point (pI)

78.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 143 - 203 6.7e-20 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 244, 325
AciI CCGC 4 cut(s) 98, 227, 511, 558
AclWI GGATC 1 cut(s) 591
AcoI YGGCCR 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 28, 546
AjiI CACGTC 1 cut(s) 480
AluBI AGCT 3 cut(s) 146, 269, 338
AluI AGCT 3 cut(s) 146, 269, 338
AlwI GGATC 1 cut(s) 591
AlwNI CAGNNNCTG 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 529
AoxI GGCC 2 cut(s) 30, 206
ApeKI GCWGC 1 cut(s) 513
AspLEI GCGC 2 cut(s) 370, 458
AsuC2I CCSGG 3 cut(s) 530, 531, 548
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 529
BaeGI GKGCMC 2 cut(s) 528, 608
BalI TGGCCA 1 cut(s) 32
BanI GGYRCC 2 cut(s) 244, 325
BbvI GCAGC 1 cut(s) 500
BceAI ACGGC 2 cut(s) 72, 604
BclI TGATCA 1 cut(s) 237
BcnI CCSGG 3 cut(s) 530, 531, 548
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 3 cut(s) 99, 514, 559
BlsI GCNGC 3 cut(s) 100, 515, 560
Bme1390I CCNGG 3 cut(s) 530, 531, 548
BmeT110I CYCGRG 1 cut(s) 529
BmgBI CACGTC 1 cut(s) 480
BmiI GGNNCC 3 cut(s) 153, 246, 327
BmrFI CCNGG 3 cut(s) 530, 531, 548
BmrI ACTGGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 545
BmuI ACTGGG 1 cut(s) 404
BpmI CTGGAG 5 cut(s) 180, 237, 264, 318, 357
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 3 cut(s) 530, 531, 548
BsaJI CCNNGG 3 cut(s) 528, 529, 586
BsaXI ACNNNNNCTCC 6 cut(s) 205, 235, 286, 316, 379, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 546
Bse1I ACTGG 5 cut(s) 197, 281, 359, 374, 410
BseDI CCNNGG 3 cut(s) 528, 529, 586
BseLI CCNNNNNNNGG 2 cut(s) 28, 546
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 5 cut(s) 197, 281, 359, 374, 410
BseSI GKGCMC 2 cut(s) 528, 608
BseXI GCAGC 1 cut(s) 500
BshFI GGCC 2 cut(s) 32, 208
BshNI GGYRCC 2 cut(s) 244, 325
BsiHKCI CYCGRG 1 cut(s) 529
BsiSI CCGG 4 cut(s) 149, 530, 540, 547
BslI CCNNNNNNNGG 2 cut(s) 28, 546
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 2 cut(s) 32, 208
BsoBI CYCGRG 1 cut(s) 529
Bsp1286I GDGCHC 2 cut(s) 528, 608
Bsp143I GATC 3 cut(s) 70, 237, 596
BspACI CCGC 4 cut(s) 98, 227, 511, 558
BspANI GGCC 2 cut(s) 32, 208
BspCNI CTCAG 1 cut(s) 565
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 3 cut(s) 153, 246, 327
BspPI GGATC 1 cut(s) 591
BspT107I GGYRCC 2 cut(s) 244, 325
BsrI ACTGG 5 cut(s) 197, 281, 359, 374, 410
BssECI CCNNGG 3 cut(s) 528, 529, 586
BssMI GATC 3 cut(s) 70, 237, 596
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 493, 524
BstDEI CTNAG 2 cut(s) 573, 609
BstDSI CCRYGG 1 cut(s) 586
BstHHI GCGC 2 cut(s) 370, 458
BstKTI GATC 3 cut(s) 73, 240, 599
BstMBI GATC 3 cut(s) 70, 237, 596
BstMWI GCNNNNNNNGC 5 cut(s) 11, 501, 510, 519, 564
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 3 cut(s) 528, 529, 546
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 2 cut(s) 528, 608
BstV1I GCAGC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 596
BstYI RGATCY 1 cut(s) 596
BsuRI GGCC 2 cut(s) 32, 208
BtgI CCRYGG 1 cut(s) 586
BtrI CACGTC 1 cut(s) 480
BtsIMutI CAGTG 4 cut(s) 204, 288, 381, 570
Cac8I GCNNGC 2 cut(s) 493, 524
CaiI CAGNNNCTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 67
CfoI GCGC 2 cut(s) 370, 458
Cfr9I CCCGGG 1 cut(s) 529
CviAII CATG 5 cut(s) 68, 77, 484, 496, 501
DdeI CTNAG 2 cut(s) 573, 609
DpnI GATC 3 cut(s) 72, 239, 598
DpnII GATC 3 cut(s) 70, 237, 596
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco88I CYCGRG 1 cut(s) 529
FaeI CATG 5 cut(s) 71, 80, 487, 499, 504
FalI AAGNNNNNCTT 2 cut(s) 442, 474
FatI CATG 5 cut(s) 67, 76, 483, 495, 500
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 99, 514, 559
Fsp4HI GCNGC 3 cut(s) 99, 514, 559
FspBI CTAG 1 cut(s) 164
GlaI GCGC 2 cut(s) 369, 457
GluI GCNGC 3 cut(s) 99, 514, 559
GsuI CTGGAG 5 cut(s) 180, 237, 264, 318, 357
HaeIII GGCC 2 cut(s) 32, 208
HapII CCGG 4 cut(s) 149, 530, 540, 547
HhaI GCGC 2 cut(s) 370, 458
Hin1II CATG 5 cut(s) 71, 80, 487, 499, 504
Hin6I GCGC 2 cut(s) 368, 456
HinP1I GCGC 2 cut(s) 368, 456
HpaII CCGG 4 cut(s) 149, 530, 540, 547
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 446
Hpy188III TCNNGA 2 cut(s) 68, 88
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 4 cut(s) 463, 483, 495, 516
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 501, 510, 519, 564
HpyF3I CTNAG 2 cut(s) 573, 609
HpySE526I ACGT 1 cut(s) 479
Hsp92II CATG 5 cut(s) 71, 80, 487, 499, 504
HspAI GCGC 2 cut(s) 368, 456
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 3 cut(s) 70, 237, 596
LmnI GCTCC 7 cut(s) 151, 157, 226, 274, 307, 343, 400
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 1 cut(s) 545
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 2 cut(s) 166, 506
MalI GATC 3 cut(s) 72, 239, 598
MboI GATC 3 cut(s) 70, 237, 596
MboII GAAGA 1 cut(s) 484
MflI RGATCY 1 cut(s) 596
MhlI GDGCHC 2 cut(s) 528, 608
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 513
MspI CCGG 4 cut(s) 149, 530, 540, 547
MspR9I CCNGG 3 cut(s) 530, 531, 548
Mva1269I GAATGC 1 cut(s) 463
MwoI GCNNNNNNNGC 5 cut(s) 11, 501, 510, 519, 564
NciI CCSGG 3 cut(s) 530, 531, 548
NdeII GATC 3 cut(s) 70, 237, 596
NlaIII CATG 5 cut(s) 71, 80, 487, 499, 504
NlaIV GGNNCC 3 cut(s) 153, 246, 327
NmuCI GTSAC 2 cut(s) 166, 506
NspI RCATGY 1 cut(s) 504
PagI TCATGA 1 cut(s) 67
PctI GAATGC 1 cut(s) 463
PkrI GCNGC 3 cut(s) 100, 515, 560
PspN4I GGNNCC 3 cut(s) 153, 246, 327
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 1 cut(s) 596
RseI CAYNNNNRTG 1 cut(s) 575
SatI GCNGC 3 cut(s) 99, 514, 559
Sau3AI GATC 3 cut(s) 70, 237, 596
ScrFI CCNGG 3 cut(s) 530, 531, 548
SduI GDGCHC 2 cut(s) 528, 608
SfaNI GCATC 1 cut(s) 545
SfcI CTRYAG 1 cut(s) 264
SmaI CCCGGG 1 cut(s) 531
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SsiI CCGC 4 cut(s) 98, 227, 511, 558
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 3 cut(s) 528, 529, 546
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 482
TaqI TCGA 1 cut(s) 467
TauI GCSGC 2 cut(s) 101, 561
TscAI CASTG 4 cut(s) 204, 288, 381, 577
TseFI GTSAC 2 cut(s) 166, 506
TseI GCWGC 1 cut(s) 513
Tsp45I GTSAC 2 cut(s) 166, 506
TspDTI ATGAA 1 cut(s) 51
TspMI CCCGGG 1 cut(s) 529
TspRI CASTG 4 cut(s) 204, 288, 381, 577
XceI RCATGY 1 cut(s) 504
XmaI CCCGGG 1 cut(s) 529
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.