Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001842

Physical Location & Seq

Genomic Coordinates Reverse (-)

15050808 .. 15052165

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G178400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCAGCAGTACGCGTGGTTCTTTTGCTGGGAGTTTTTCTTTTCTGCCTTACTGAGGTTTCATCTGATATCAAGATTGAAGAACAATTACCTCATCTTGCGCAGCTTGTTGTGAGAGGTGGAAGCAGACGGCTAATGCAAGACATAGACTGTGGAGGGCTGTGCAAGCAGAGGTGCAGCGTTCACTCGAGGCCAAAGCTTTGCAGCAGGGCGTGCGGCACGTGCTGTGTGAGGTGCAAGTGTGTGCCACCTGGCACTTCTGGGAACAGAGAACTCTGTGGCAAGTGCTACACTGACATGACCACCCATGGCAACAAAACCAAGTGCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

111

Amino Acids

11.99

Weight (kDa)

8.98

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14940 FvH4_4g35060 FvH4_6g50260 FvH4_6g50260
malus_domestica	MD09G1038100.v1.1 MD13G1086500.v1.1 MD16G1086000.v1.1 MD17G1039200.v1.1 MD17G1039400.v1.1
prunus_persica	Prupe.1G260200_v2.0.a1 Prupe.1G260200_v2.0.a1 Prupe.3G279800_v2.0.a1 Prupe.5G178400_v2.0.a1
pyrus_communis	pycom13g07470 pycom17g03540
rosa_chinensis	RchiOBHm_Chr2g0170521 RchiOBHm_Chr4g0444681
rosa_laevigata	RLG00000002282 RLG00000005815 RLG00000021964
rosa_multiflora	Rmu_co8502627.1_g000001 Rmu_sc0000172.1_g000002 Rmu_sc0009395.1_g000002 Rmu_sc0009395.1_g000011 Rmu_sc0010307.1_g000007
rosa_roxburghii	Rroxscaffold_2G00081220 Rroxscaffold_5G00385120 Rroxscaffold_7G00211030
rosa_rugosa	Rorug02G0548900 Rorug02G0548900 Rorug02G0549700 Rorug02G0549700 Rorug04G0354300
rosa_samantha	Rh1BG166100 Rh1DG196900 Rh2AG620900 Rh2BG632000 Rh2CG601600 Rh2CG602200 Rh2DG644700 Rh4AG414400 Rh4BG426100 Rh4CG441000 Rh4DG422000
rosa_wichuraiana	Rw2G051480 Rw2G051530 Rw4G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	102
AccII	CGCG	1 cut(s)	15
AciI	CCGC	1 cut(s)	216
AcvI	CACGTG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	106, 199
AluI	AGCT	2 cut(s)	106, 199
Ama87I	CYCGRG	1 cut(s)	187
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	4 cut(s)	5, 103, 177, 204
AspLEI	GCGC	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	329
BarI	GAAGNNNNNNTAC	2 cut(s)	72, 104
BbrPI	CACGTG	1 cut(s)	222
BbvI	GCAGC	4 cut(s)	17, 115, 189, 216
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	252
BisI	GCNGC	5 cut(s)	6, 104, 178, 205, 217
BlsI	GCNGC	5 cut(s)	7, 105, 179, 206, 218
Bme1390I	CCNGG	1 cut(s)	252
BmeT110I	CYCGRG	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	4 cut(s)	17, 115, 189, 216
BseYI	CCCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	55
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	167, 214
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	307
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 213, 222
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	329
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	4 cut(s)	17, 115, 189, 216
BsuRI	GGCC	1 cut(s)	193
BtgI	CCRYGG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	167, 214
CfoI	GCGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	2 cut(s)	298, 308
CviJI	RGCY	5 cut(s)	106, 133, 160, 193, 199
CviKI_1	RGCY	5 cut(s)	106, 133, 160, 193, 199
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	307
Eco32I	GATATC	1 cut(s)	70
Eco72I	CACGTG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	2 cut(s)	301, 311
FaiI	YATR	3 cut(s)	146, 299, 309
FatI	CATG	2 cut(s)	297, 307
Fnu4HI	GCNGC	5 cut(s)	6, 104, 178, 205, 217
Fsp4HI	GCNGC	5 cut(s)	6, 104, 178, 205, 217
FspI	TGCGCA	1 cut(s)	102
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	5 cut(s)	6, 104, 178, 205, 217
GsaI	CCCAGC	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	301, 311
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	5 cut(s)	139, 165, 177, 204, 237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 213, 222
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	301, 311
HspAI	GCGC	1 cut(s)	101
LpnPI	CCDG	5 cut(s)	14, 193, 237, 246, 264
Lsp1109I	GCAGC	4 cut(s)	17, 115, 189, 216
MaeII	ACGT	1 cut(s)	221
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	1 cut(s)	86
MluI	ACGCGT	1 cut(s)	13
MnlI	CCTC	7 cut(s)	49, 102, 110, 149, 165, 183, 225
MslI	CAYNNNNRTG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	166, 213, 222
NcoI	CCATGG	1 cut(s)	307
NlaIII	CATG	2 cut(s)	301, 311
NsbI	TGCGCA	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	187
PkrI	GCNGC	5 cut(s)	7, 105, 179, 206, 218
PmaCI	CACGTG	1 cut(s)	222
PmlI	CACGTG	1 cut(s)	222
Ppu21I	YACGTR	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	250
PspCI	CACGTG	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	250
PspXI	VCTCGAGB	1 cut(s)	187
PsrI	GAACNNNNNNTAC	1 cut(s)	35
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	296
SatI	GCNGC	5 cut(s)	6, 104, 178, 205, 217
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	9 cut(s)	60, 94, 108, 121, 176, 201, 224, 236, 253
Sfr274I	CTCGAG	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	188
TasI	AATT	1 cut(s)	86
TauI	GCSGC	1 cut(s)	219
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	4 cut(s)	5, 103, 177, 204
TspDTI	ATGAA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	298
XagI	CCTNNNNNAGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.