RLG00000002282

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001842
Physical Location & Seq
Forward (+)
31376753 .. 31377651
899 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002282

Sequence Viewer

Length: 762 bp
ATGCTCGTTAGGTGGGAAGGAACCTCCTTGACTCCTCCGGCTAGGACCTCCCCCGCTCTACCATCTCTAATCAAACCTTCGACTCCACCAGCTCAAGGAAGGTCACCACCTTTGCCACCTTTGAAAAGGGCACCACCATCTCCCCCTCCTTTAAAAAAGGCACCACCACCTCCACCACCACCACCAGAGGAAGAAGAGGGAGATACACCAGCTCCCTCTCCTCAAGATGACAACTTATTAGCTCCATCCCCTTTTATGGACGCACCCTTCCTTCACATCTGGCAAGCGCACTCGTTCCTTCACCTTTGGCAAATGCACCCGCTCCTGTTGGCAGCAGTGGCGTGCAGGTGCCCAAAATCTTGTATGACCTCCCCTACTCCACCATCTCCAATCAAACCCTCGACTCCACCAGCTCAAGGAAGGTCACCACCTTCGTCACATCTAAAAAAGGCACCACCACCTCCCCTAGCTTCAAGAAAGCCACCACCACTACCTCCACCAGCTCCAACACCTCAAGATGACGATGATGTGGCACCAGCTCCTGTATCTCAAGATGACAATGCTCTTGTTGCAGATTGCATAACGTTGTCTGATCAGAGGTGTGCGTTTCATCAAAACAAGAAAGTGTGCATGGATGTATGCATGATTTGTTGTGACCGCTGCAACTGTGTTCCACCTGGACCTTCTGGCAACAACAAGGAAACATGTGGGCCCTGCTACACTCAAATACTCATCCAAGAATACAAGTACAATTTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

254

Amino Acids

27.18

Weight (kDa)

7.49

Isoelectric Point (pI)

95.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 192 - 249 2.1e-14 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 336
Acc36I ACCTGC 1 cut(s) 336
AccB1I GGYRCC 5 cut(s) 130, 160, 348, 451, 532
AccBSI CCGCTC 2 cut(s) 56, 322
AciI CCGC 3 cut(s) 54, 320, 658
AclI AACGTT 1 cut(s) 584
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 3 cut(s) 95, 256, 416
AflIII ACRYGT 1 cut(s) 704
AgsI TTSAA 2 cut(s) 124, 474
AjnI CCWGG 1 cut(s) 676
AluBI AGCT 7 cut(s) 92, 212, 242, 413, 470, 503, 539
AluI AGCT 7 cut(s) 92, 212, 242, 413, 470, 503, 539
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 1 cut(s) 710
ApaI GGGCCC 1 cut(s) 714
ApeKI GCWGC 2 cut(s) 332, 660
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 4 cut(s) 45, 680, 710, 711
AsuHPI GGTGA 3 cut(s) 96, 293, 417
AvaII GGWCC 2 cut(s) 45, 680
BaeGI GKGCMC 3 cut(s) 133, 353, 714
BanI GGYRCC 5 cut(s) 130, 160, 348, 451, 532
BanII GRGCYC 1 cut(s) 714
BbvI GCAGC 2 cut(s) 344, 647
BccI CCATC 4 cut(s) 70, 145, 253, 391
BciT130I CCWGG 1 cut(s) 678
BclI TGATCA 1 cut(s) 592
BfaI CTAG 2 cut(s) 42, 467
BfuAI ACCTGC 1 cut(s) 336
BisI GCNGC 2 cut(s) 333, 661
BlsI GCNGC 2 cut(s) 334, 662
Bme1390I CCNGG 1 cut(s) 678
Bme18I GGWCC 2 cut(s) 45, 680
BmgT120I GGNCC 4 cut(s) 45, 680, 710, 711
BmiI GGNNCC 7 cut(s) 22, 132, 162, 350, 453, 534, 712
BmrFI CCNGG 1 cut(s) 678
BpuEI CTTGAG 5 cut(s) 78, 207, 399, 498, 534
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 256, 416
BseBI CCWGG 1 cut(s) 678
BseGI GGATG 3 cut(s) 245, 640, 732
BseLI CCNNNNNNNGG 3 cut(s) 95, 256, 416
BseRI GAGGAG 2 cut(s) 24, 210
BseSI GKGCMC 3 cut(s) 133, 353, 714
BseXI GCAGC 2 cut(s) 344, 647
BsgI GTGCAG 1 cut(s) 364
BshFI GGCC 1 cut(s) 712
BshNI GGYRCC 5 cut(s) 130, 160, 348, 451, 532
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 95, 256, 416
BsnI GGCC 1 cut(s) 712
Bsp120I GGGCCC 1 cut(s) 710
Bsp1286I GDGCHC 3 cut(s) 133, 353, 714
Bsp143I GATC 1 cut(s) 592
BspACI CCGC 3 cut(s) 54, 320, 658
BspANI GGCC 1 cut(s) 712
BspLI GGNNCC 7 cut(s) 22, 132, 162, 350, 453, 534, 712
BspMI ACCTGC 1 cut(s) 336
BspT107I GGYRCC 5 cut(s) 130, 160, 348, 451, 532
BsrBI CCGCTC 2 cut(s) 56, 322
BssMI GATC 1 cut(s) 592
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 1 cut(s) 668
Bst6I CTCTTC 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 285, 343
BstEII GGTNACC 2 cut(s) 102, 423
BstF5I GGATG 3 cut(s) 245, 640, 732
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 595
BstMBI GATC 1 cut(s) 592
BstMWI GCNNNNNNNGC 2 cut(s) 338, 569
BstNI CCWGG 1 cut(s) 678
BstNSI RCATGY 1 cut(s) 708
BstPI GGTNACC 2 cut(s) 102, 423
BstSCI CCNGG 1 cut(s) 676
BstSLI GKGCMC 3 cut(s) 133, 353, 714
BstV1I GCAGC 2 cut(s) 344, 647
BsuRI GGCC 1 cut(s) 712
BtsCI GGATG 3 cut(s) 245, 640, 732
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
BveI ACCTGC 1 cut(s) 336
Cac8I GCNNGC 2 cut(s) 285, 343
CaiI CAGNNNCTG 1 cut(s) 542
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 4 cut(s) 45, 680, 710, 711
CseI GACGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 748
CviAII CATG 3 cut(s) 631, 643, 705
CviQI GTAC 1 cut(s) 748
DpnI GATC 1 cut(s) 594
DpnII GATC 1 cut(s) 592
DraI TTTAAA 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 714
Eco47I GGWCC 2 cut(s) 45, 680
Eco91I GGTNACC 2 cut(s) 102, 423
EcoO109I RGGNCCY 2 cut(s) 45, 711
EcoO65I GGTNACC 2 cut(s) 102, 423
EcoRII CCWGG 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 644
EcoT38I GRGCYC 1 cut(s) 714
FaeI CATG 3 cut(s) 634, 646, 708
FaiI YATR 7 cut(s) 257, 365, 581, 632, 640, 644, 706
FatI CATG 3 cut(s) 630, 642, 704
FauI CCCGC 2 cut(s) 61, 327
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 2 cut(s) 333, 661
FokI GGATG 3 cut(s) 232, 647, 719
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 2 cut(s) 333, 661
FspBI CTAG 2 cut(s) 42, 467
GlaI GCGC 1 cut(s) 288
GluI GCNGC 2 cut(s) 333, 661
HaeIII GGCC 1 cut(s) 712
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 289
Hin1II CATG 3 cut(s) 634, 646, 708
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HinfI GANTC 3 cut(s) 31, 82, 403
HpaII CCGG 1 cut(s) 38
HphI GGTGA 3 cut(s) 96, 293, 417
Hpy188I TCNGA 2 cut(s) 592, 597
Hpy188III TCNNGA 4 cut(s) 224, 474, 515, 551
HpyAV CCTTC 9 cut(s) 11, 87, 93, 277, 281, 308, 414, 441, 693
HpyCH4III ACNGT 1 cut(s) 668
HpyCH4IV ACGT 1 cut(s) 584
HpyCH4V TGCA 7 cut(s) 316, 345, 572, 579, 630, 642, 663
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 569
HpySE526I ACGT 1 cut(s) 584
Hsp92II CATG 3 cut(s) 634, 646, 708
HspAI GCGC 1 cut(s) 287
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 1 cut(s) 592
LmnI GCTCC 5 cut(s) 217, 247, 327, 508, 544
Lsp1109I GCAGC 2 cut(s) 344, 647
MaeI CTAG 2 cut(s) 42, 467
MaeII ACGT 1 cut(s) 584
MaeIII GTNAC 4 cut(s) 102, 423, 435, 653
MalI GATC 1 cut(s) 594
MbiI CCGCTC 2 cut(s) 56, 322
MboI GATC 1 cut(s) 592
MboII GAAGA 2 cut(s) 203, 206
MhlI GDGCHC 3 cut(s) 133, 353, 714
MluCI AATT 1 cut(s) 751
MlyI GAGTC 3 cut(s) 25, 76, 397
MmeI TCCRAC 1 cut(s) 530
Mph1103I ATGCAT 1 cut(s) 644
MseI TTAA 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 660
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 678
MvaI CCWGG 1 cut(s) 678
MwoI GCNNNNNNNGC 2 cut(s) 338, 569
NdeII GATC 1 cut(s) 592
NlaIII CATG 3 cut(s) 634, 646, 708
NlaIV GGNNCC 7 cut(s) 22, 132, 162, 350, 453, 534, 712
NmuCI GTSAC 4 cut(s) 102, 423, 435, 653
NsiI ATGCAT 1 cut(s) 644
NspI RCATGY 1 cut(s) 708
PaqCI CACCTGC 1 cut(s) 336
PciI ACATGT 1 cut(s) 704
PkrI GCNGC 2 cut(s) 334, 662
PleI GAGTC 3 cut(s) 25, 76, 397
PpsI GAGTC 3 cut(s) 25, 76, 397
PpuMI RGGWCCY 1 cut(s) 45
PscI ACATGT 1 cut(s) 704
Psp1406I AACGTT 1 cut(s) 584
Psp5II RGGWCCY 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 676
PspEI GGTNACC 2 cut(s) 102, 423
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 7 cut(s) 22, 132, 162, 350, 453, 534, 712
PspOMI GGGCCC 1 cut(s) 710
PspPI GGNCC 4 cut(s) 45, 680, 710, 711
PspPPI RGGWCCY 1 cut(s) 45
PstNI CAGNNNCTG 1 cut(s) 542
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 2 cut(s) 333, 661
Sau3AI GATC 1 cut(s) 592
Sau96I GGNCC 4 cut(s) 45, 680, 710, 711
SchI GAGTC 3 cut(s) 25, 76, 397
ScrFI CCNGG 1 cut(s) 678
SduI GDGCHC 3 cut(s) 133, 353, 714
SinI GGWCC 2 cut(s) 45, 680
SmlI CTYRAG 5 cut(s) 93, 222, 414, 513, 549
SmoI CTYRAG 5 cut(s) 93, 222, 414, 513, 549
Sse9I AATT 1 cut(s) 751
SsiI CCGC 3 cut(s) 54, 320, 658
SspMI CTAG 2 cut(s) 42, 467
StyD4I CCNGG 1 cut(s) 676
TaaI ACNGT 1 cut(s) 668
TaiI ACGT 1 cut(s) 587
TaqI TCGA 2 cut(s) 80, 401
TasI AATT 1 cut(s) 751
TatI WGTACW 1 cut(s) 747
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 4 cut(s) 102, 423, 435, 653
TseI GCWGC 2 cut(s) 332, 660
Tsp45I GTSAC 4 cut(s) 102, 423, 435, 653
TspDTI ATGAA 1 cut(s) 599
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 2 cut(s) 45, 680
XceI RCATGY 1 cut(s) 708
XspI CTAG 2 cut(s) 42, 467
Zsp2I ATGCAT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.