MD16G1086000.v1.1

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0001842
Physical Location & Seq
Forward (+)
6006049 .. 6007252
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1086000.v1.1.491

Sequence Viewer

Length: 324 bp
ATGGAGTCACGCTTGCTTCTTGTTGTGGCGGTTTTGTTCTTCTGCATGGCGGTGGTTTCGTCCGAACATTCTACCATTGAAGACCATGAAACGCAGGCGGTGGTGAAAGGAGCAAACAGAAGGCTTTTACCATTCCTGAACTGTGAAGGGTTGTGCAATCAGAGGTGCAGTAAGCACTCGAGGCCAAACGTGTGCACAAGGGCATGTGGTACCTGCTGCATGAGGTGCAAATGTGTTCCTCCCGGCACCGCTGGCAACAGAGAAGCCTGCGGGACCTGCTACACTGATATGACTACTCACCACAACCACCTCAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

108

Amino Acids

11.8

Weight (kDa)

8.46

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 47 - 107 2e-20 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 221, 284
Acc65I GGTACC 1 cut(s) 209
AccB1I GGYRCC 2 cut(s) 209, 245
AciI CCGC 5 cut(s) 29, 50, 98, 249, 270
AfaI GTAC 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 1 cut(s) 182
ApaLI GTGCAC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 216
Asp718I GGTACC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 273
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 115, 290
AvaI CYCGRG 1 cut(s) 178
AvaII GGWCC 1 cut(s) 273
BaeGI GKGCMC 2 cut(s) 197, 320
BanI GGYRCC 2 cut(s) 209, 245
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 203
BcnI CCSGG 1 cut(s) 243
BfuAI ACCTGC 2 cut(s) 221, 284
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 3 cut(s) 211, 247, 274
BmrFI CCNGG 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 243
BseSI GKGCMC 2 cut(s) 197, 320
BseXI GCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 187
BshFI GGCC 1 cut(s) 184
BshNI GGYRCC 2 cut(s) 209, 245
BsiHKAI GWGCWC 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 197, 320
BspACI CCGC 5 cut(s) 29, 50, 98, 249, 270
BspANI GGCC 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 211, 247, 274
BspMI ACCTGC 2 cut(s) 221, 284
BspT107I GGYRCC 2 cut(s) 209, 245
Bst4CI ACNGT 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 225
BstC8I GCNNGC 4 cut(s) 14, 96, 253, 268
BstMWI GCNNNNNNNGC 4 cut(s) 181, 225, 252, 276
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 241
BstSLI GKGCMC 2 cut(s) 197, 320
BstV1I GCAGC 1 cut(s) 203
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 282
BveI ACCTGC 2 cut(s) 221, 284
Cac8I GCNNGC 4 cut(s) 14, 96, 253, 268
Cfr13I GGNCC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 210
CviAII CATG 4 cut(s) 46, 86, 204, 220
CviJI RGCY 3 cut(s) 124, 184, 266
CviKI_1 RGCY 3 cut(s) 124, 184, 266
CviQI GTAC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 273
FaeI CATG 4 cut(s) 49, 89, 207, 223
FaiI YATR 5 cut(s) 47, 87, 205, 221, 290
FaqI GGGAC 1 cut(s) 286
FatI CATG 4 cut(s) 45, 85, 203, 219
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 217
GluI GCNGC 1 cut(s) 217
HaeIII GGCC 1 cut(s) 184
HapII CCGG 1 cut(s) 243
Hin1II CATG 4 cut(s) 49, 89, 207, 223
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 115, 290
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 2 cut(s) 64, 162
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 114, 140
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 6 cut(s) 45, 156, 168, 195, 219, 228
HpyF10VI GCNNNNNNNGC 4 cut(s) 181, 225, 252, 276
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 4 cut(s) 49, 89, 207, 223
KpnI GGTACC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 7 cut(s) 80, 149, 226, 237, 256, 280, 289
Lsp1109I GCAGC 1 cut(s) 203
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 6
MboII GAAGA 2 cut(s) 31, 92
MhlI GDGCHC 2 cut(s) 197, 320
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 5 cut(s) 156, 174, 216, 249, 320
MseI TTAA 1 cut(s) 322
MslI CAYNNNNRTG 2 cut(s) 50, 287
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 243
MwoI GCNNNNNNNGC 4 cut(s) 181, 225, 252, 276
NciI CCSGG 1 cut(s) 243
NlaIII CATG 4 cut(s) 49, 89, 207, 223
NlaIV GGNNCC 3 cut(s) 211, 247, 274
NmuCI GTSAC 1 cut(s) 6
NspI RCATGY 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 178
PkrI GCNGC 1 cut(s) 218
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 273
PspN4I GGNNCC 3 cut(s) 211, 247, 274
PspPI GGNCC 1 cut(s) 273
PspPPI RGGWCCY 1 cut(s) 273
PspXI VCTCGAGB 1 cut(s) 178
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 2 cut(s) 50, 287
SaqAI TTAA 1 cut(s) 322
SatI GCNGC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 2 cut(s) 197, 320
SetI ASST 6 cut(s) 167, 192, 215, 227, 278, 312
Sfr274I CTCGAG 1 cut(s) 178
SinI GGWCC 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 178
SmiMI CAYNNNNRTG 2 cut(s) 50, 287
SmlI CTYRAG 2 cut(s) 178, 311
SmoI CTYRAG 2 cut(s) 178, 311
SsiI CCGC 5 cut(s) 29, 50, 98, 249, 270
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 179
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 1 cut(s) 289
VneI GTGCAC 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 273
XceI RCATGY 1 cut(s) 207
XhoI CTCGAG 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.