Rroxscaffold_7G00211030

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001842
Physical Location & Seq
Reverse (-)
61450354 .. 61451159
806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211030.1

Sequence Viewer

Length: 174 bp
ATGAGGGCCAGCATGACATGCTATGGCCGCTGCAAATGTACGCCTCCGCAAACTTCTAGTAACCGAGAAAGATGCGGCAAGTGCTACACTGACATGACCACCCACAGAAACAAATCTGAGTGCCCTTACAGGGTCTGCTTCCCTGTTGTTGGTTATGCTTCAATGGAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

57

Amino Acids

6.57

Weight (kDa)

8.98

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 1 - 42 7.6e-09 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 28, 47, 75
AcoI YGGCCR 1 cut(s) 25
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 2 cut(s) 130, 149
AgsI TTSAA 1 cut(s) 162
AlwNI CAGNNNCTG 1 cut(s) 135
AoxI GGCC 2 cut(s) 6, 25
ApeKI GCWGC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 6
BaeGI GKGCMC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BfaI CTAG 1 cut(s) 57
BisI GCNGC 3 cut(s) 28, 31, 76
BlsI GCNGC 3 cut(s) 29, 32, 77
BmgT120I GGNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 149
BseLI CCNNNNNNNGG 2 cut(s) 130, 149
BseMII CTCAG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 8, 27
BslI CCNNNNNNNGG 2 cut(s) 130, 149
BsnI GGCC 2 cut(s) 8, 27
Bsp1286I GDGCHC 1 cut(s) 125
BspACI CCGC 3 cut(s) 28, 47, 75
BspANI GGCC 2 cut(s) 8, 27
BspCNI CTCAG 1 cut(s) 109
BstAPI GCANNNNNTGC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 117
BstMWI GCNNNNNNNGC 3 cut(s) 18, 27, 81
BstNSI RCATGY 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 8, 27
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 39
CviAII CATG 3 cut(s) 13, 18, 94
CviJI RGCY 2 cut(s) 8, 27
CviKI_1 RGCY 2 cut(s) 8, 27
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 25
FaeI CATG 3 cut(s) 16, 21, 97
FaiI YATR 5 cut(s) 14, 19, 24, 95, 156
FatI CATG 3 cut(s) 12, 17, 93
Fnu4HI GCNGC 3 cut(s) 28, 31, 76
Fsp4HI GCNGC 3 cut(s) 28, 31, 76
FspBI CTAG 1 cut(s) 57
GluI GCNGC 3 cut(s) 28, 31, 76
HaeIII GGCC 2 cut(s) 8, 27
Hin1II CATG 3 cut(s) 16, 21, 97
Hpy188I TCNGA 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 27, 81
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 3 cut(s) 16, 21, 97
LpnPI CCDG 3 cut(s) 22, 115, 156
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 62
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 125
MnlI CCTC 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 18, 27, 81
NlaIII CATG 3 cut(s) 16, 21, 97
NspI RCATGY 1 cut(s) 21
PkrI GCNGC 3 cut(s) 29, 32, 77
PspPI GGNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 135
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 92
SatI GCNGC 3 cut(s) 28, 31, 76
Sau96I GGNCC 1 cut(s) 6
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 1 cut(s) 62
SgeI CNNG 9 cut(s) 21, 25, 30, 69, 77, 91, 106, 142, 155
SmiMI CAYNNNNRTG 1 cut(s) 92
SsiI CCGC 3 cut(s) 28, 47, 75
SspMI CTAG 1 cut(s) 57
TauI GCSGC 2 cut(s) 30, 78
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 30
TspRI CASTG 1 cut(s) 94
XceI RCATGY 1 cut(s) 21
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.