FvH4_6g50260

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001842
Physical Location & Seq
Reverse (-)
37421966 .. 37424293
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50260.t1

Sequence Viewer

Length: 537 bp
ATGGCTTTCAAAGCCTTCCTCCTTCTCTTGGTCACCATTCTCTTTGTTGCCACAAGGGCTTCATCATCTCATGATCTTCATGAGGAACTCAAGATAAAGGCTGCTTATGTCCAGAGCCAAACACCACCACCTCTGGTGACCAAGCCACCACCTACTTATGCTCCACCGCCAAAAGTGATCAAGCCACCCACTCCAGCACCACCTCTGCCCAAGCCACCAGTAGTGAAGCCACCTACTTATGCTCCTCCACCAAAAGTTATCAAGGCACCTCCACCAGCACCACCTCTGCCCAAGCCACCAGTGAAGCCTCCCACCTATGCTCCACCACTTCCCCCAGTCAAATCAAAAAAGGATTGCATTCCACTGTGTGAACAAAGGTGCTCTTTGCATTCGAGGAAGAGGACGTGCATGAGGGCTTGCATGACATGCTGTGACCGCTGCAAATGTGTGCCTCCGGGAACTTCCGGCAACCGGGAAAGATGCGGCAAGTGCTACACTGACATGACCACCCACGGCAACAGATCCAAGTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

179

Amino Acids

19.38

Weight (kDa)

9.76

Isoelectric Point (pI)

63.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 118 - 178 1.6e-20 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AciI CCGC 3 cut(s) 167, 436, 483
AclWI GGATC 1 cut(s) 516
AdeI CACNNNGTG 1 cut(s) 368
AfiI CCNNNNNNNGG 2 cut(s) 28, 471
AgsI TTSAA 1 cut(s) 10
AjiI CACGTC 1 cut(s) 405
Alw21I GWGCWC 1 cut(s) 383
AlwI GGATC 1 cut(s) 516
ApeKI GCWGC 2 cut(s) 101, 438
AsuC2I CCSGG 2 cut(s) 456, 473
AsuHPI GGTGA 2 cut(s) 25, 148
BaeGI GKGCMC 1 cut(s) 533
BanI GGYRCC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 383
BbvI GCAGC 2 cut(s) 88, 425
BceAI ACGGC 1 cut(s) 529
BclI TGATCA 1 cut(s) 177
BcnI CCSGG 2 cut(s) 456, 473
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 3 cut(s) 102, 439, 484
BlsI GCNGC 3 cut(s) 103, 440, 485
Bme1390I CCNGG 2 cut(s) 456, 473
BmgBI CACGTC 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 456, 473
BmrI ACTGGG 1 cut(s) 329
BmsI GCATC 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 329
BpmI CTGGAG 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 2 cut(s) 456, 473
BsaJI CCNNGG 1 cut(s) 511
BsaXI ACNNNNNCTCC 6 cut(s) 145, 175, 226, 256, 304, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 471
Bse1I ACTGG 3 cut(s) 218, 299, 335
BseDI CCNNGG 1 cut(s) 511
BseLI CCNNNNNNNGG 2 cut(s) 28, 471
BseNI ACTGG 3 cut(s) 218, 299, 335
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 2 cut(s) 88, 425
BshNI GGYRCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 383
BsiSI CCGG 3 cut(s) 455, 465, 472
BslI CCNNNNNNNGG 2 cut(s) 28, 471
BsmI GAATGC 2 cut(s) 357, 388
Bsp1286I GDGCHC 2 cut(s) 383, 533
Bsp143I GATC 3 cut(s) 73, 177, 521
BspACI CCGC 3 cut(s) 167, 436, 483
BspHI TCATGA 2 cut(s) 70, 79
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 265
BsrI ACTGG 3 cut(s) 218, 299, 335
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 3 cut(s) 73, 177, 521
Bst4CI ACNGT 1 cut(s) 366
Bst6I CTCTTC 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 1 cut(s) 534
BstDSI CCRYGG 1 cut(s) 511
BstEII GGTNACC 2 cut(s) 31, 136
BstKTI GATC 3 cut(s) 76, 180, 524
BstMBI GATC 3 cut(s) 73, 177, 521
BstMWI GCNNNNNNNGC 5 cut(s) 11, 56, 426, 435, 489
BstNSI RCATGY 1 cut(s) 429
BstPI GGTNACC 2 cut(s) 31, 136
BstSCI CCNGG 2 cut(s) 454, 471
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 2 cut(s) 88, 425
BstX2I RGATCY 1 cut(s) 521
BstYI RGATCY 1 cut(s) 521
BtgI CCRYGG 1 cut(s) 511
BtrI CACGTC 1 cut(s) 405
BtsIMutI CAGTG 3 cut(s) 306, 362, 495
Cac8I GCNNGC 1 cut(s) 418
CciI TCATGA 2 cut(s) 70, 79
CviAII CATG 6 cut(s) 71, 80, 409, 421, 426, 502
DdeI CTNAG 1 cut(s) 534
DpnI GATC 3 cut(s) 75, 179, 523
DpnII GATC 3 cut(s) 73, 177, 521
DraIII CACNNNGTG 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco91I GGTNACC 2 cut(s) 31, 136
EcoO65I GGTNACC 2 cut(s) 31, 136
FaeI CATG 6 cut(s) 74, 83, 412, 424, 429, 505
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FatI CATG 6 cut(s) 70, 79, 408, 420, 425, 501
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 102, 439, 484
Fsp4HI GCNGC 3 cut(s) 102, 439, 484
GluI GCNGC 3 cut(s) 102, 439, 484
GsuI CTGGAG 1 cut(s) 177
HapII CCGG 3 cut(s) 455, 465, 472
Hin1II CATG 6 cut(s) 74, 83, 412, 424, 429, 505
HpaII CCGG 3 cut(s) 455, 465, 472
HphI GGTGA 2 cut(s) 25, 148
Hpy166II GTNNAC 1 cut(s) 371
Hpy188III TCNNGA 4 cut(s) 71, 80, 91, 112
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 2 cut(s) 25, 32
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 5 cut(s) 357, 388, 408, 420, 441
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 56, 426, 435, 489
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 1 cut(s) 404
Hsp92II CATG 6 cut(s) 74, 83, 412, 424, 429, 505
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 3 cut(s) 73, 177, 521
LmnI GCTCC 3 cut(s) 166, 247, 325
Lsp1109I GCAGC 2 cut(s) 88, 425
LweI GCATC 1 cut(s) 470
MaeII ACGT 1 cut(s) 404
MaeIII GTNAC 3 cut(s) 31, 136, 431
MalI GATC 3 cut(s) 75, 179, 523
MboI GATC 3 cut(s) 73, 177, 521
MboII GAAGA 2 cut(s) 68, 409
MflI RGATCY 1 cut(s) 521
MhlI GDGCHC 2 cut(s) 383, 533
MslI CAYNNNNRTG 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 3 cut(s) 455, 465, 472
MspR9I CCNGG 2 cut(s) 456, 473
Mva1269I GAATGC 2 cut(s) 357, 388
MwoI GCNNNNNNNGC 5 cut(s) 11, 56, 426, 435, 489
NciI CCSGG 2 cut(s) 456, 473
NdeII GATC 3 cut(s) 73, 177, 521
NlaIII CATG 6 cut(s) 74, 83, 412, 424, 429, 505
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 3 cut(s) 31, 136, 431
NspI RCATGY 1 cut(s) 429
PagI TCATGA 2 cut(s) 70, 79
PctI GAATGC 2 cut(s) 357, 388
PfoI TCCNGGA 1 cut(s) 454
PkrI GCNGC 3 cut(s) 103, 440, 485
PspEI GGTNACC 2 cut(s) 31, 136
PspN4I GGNNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 521
RseI CAYNNNNRTG 1 cut(s) 500
SatI GCNGC 3 cut(s) 102, 439, 484
Sau3AI GATC 3 cut(s) 73, 177, 521
ScrFI CCNGG 2 cut(s) 456, 473
SduI GDGCHC 2 cut(s) 383, 533
SetI ASST 9 cut(s) 133, 154, 205, 235, 271, 286, 317, 380, 407
SfaNI GCATC 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SsiI CCGC 3 cut(s) 167, 436, 483
StyD4I CCNGG 2 cut(s) 454, 471
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 1 cut(s) 407
TaqI TCGA 1 cut(s) 392
TauI GCSGC 1 cut(s) 486
TscAI CASTG 3 cut(s) 306, 369, 502
TseFI GTSAC 3 cut(s) 31, 136, 431
TseI GCWGC 2 cut(s) 101, 438
Tsp45I GTSAC 3 cut(s) 31, 136, 431
TspDTI ATGAA 2 cut(s) 51, 68
TspRI CASTG 3 cut(s) 306, 369, 502
XceI RCATGY 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.