Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001842

Physical Location & Seq

Genomic Coordinates Reverse (-)

26931058 .. 26932329

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G260200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCTTTACGCTTGCTTCTTGTTATGGCGGTTTTGCTCTTCTGCATGGAGACGCAGGTCTCATCTGATTCGAATATACAAGACCATGAAACCCAGGTGGTGAAAGGGGCAAACAGAAGGCTTTTACCCTACCTGAATTGTGATGAGTTATGCAACTCGAGGTGCAGGTTGCACTCAAGGCCAAACGTGTGCACAAGGGCATGCGGTACCTGCTGTGTGAGGTGCAAGTGTGTTCCTCCGGGTACCTCCGGCAACCGGGAGGCCTGTGGAAGGTGCTACACTGATATGACCACCCATGGCAATCGCCTCAAGTGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

107

Amino Acids

11.81

Weight (kDa)

8.76

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14940 FvH4_4g35060 FvH4_6g50260 FvH4_6g50260
malus_domestica	MD09G1038100.v1.1 MD13G1086500.v1.1 MD16G1086000.v1.1 MD17G1039200.v1.1 MD17G1039400.v1.1
prunus_persica	Prupe.1G260200_v2.0.a1 Prupe.1G260200_v2.0.a1 Prupe.3G279800_v2.0.a1 Prupe.5G178400_v2.0.a1
pyrus_communis	pycom13g07470 pycom17g03540
rosa_chinensis	RchiOBHm_Chr2g0170521 RchiOBHm_Chr4g0444681
rosa_laevigata	RLG00000002282 RLG00000005815 RLG00000021964
rosa_multiflora	Rmu_co8502627.1_g000001 Rmu_sc0000172.1_g000002 Rmu_sc0009395.1_g000002 Rmu_sc0009395.1_g000011 Rmu_sc0010307.1_g000007
rosa_roxburghii	Rroxscaffold_2G00081220 Rroxscaffold_5G00385120 Rroxscaffold_7G00211030
rosa_rugosa	Rorug02G0548900 Rorug02G0548900 Rorug02G0549700 Rorug02G0549700 Rorug04G0354300
rosa_samantha	Rh1BG166100 Rh1DG196900 Rh2AG620900 Rh2BG632000 Rh2CG601600 Rh2CG602200 Rh2DG644700 Rh4AG414400 Rh4BG426100 Rh4CG441000 Rh4DG422000
rosa_wichuraiana	Rw2G051480 Rw2G051530 Rw4G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	46, 156, 218
Acc65I	GGTACC	2 cut(s)	206, 242
AccB1I	GGYRCC	2 cut(s)	206, 242
AciI	CCGC	2 cut(s)	29, 204
AfaI	GTAC	2 cut(s)	208, 244
AfiI	CCNNNNNNNGG	2 cut(s)	255, 270
AflIII	ACRYGT	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	93
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	2 cut(s)	44, 64
Alw44I	GTGCAC	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	2 cut(s)	179, 261
ApaLI	GTGCAC	1 cut(s)	190
Asp718I	GGTACC	2 cut(s)	206, 242
AsuC2I	CCSGG	2 cut(s)	240, 257
AsuHPI	GGTGA	1 cut(s)	112
AsuII	TTCGAA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	157
BaeGI	GKGCMC	2 cut(s)	194, 317
BanI	GGYRCC	2 cut(s)	206, 242
Bbv12I	GWGCWC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	95
BcnI	CCSGG	2 cut(s)	240, 257
BcoDI	GTCTC	2 cut(s)	44, 64
BfuAI	ACCTGC	3 cut(s)	46, 156, 218
Bme1390I	CCNGG	3 cut(s)	95, 240, 257
BmeT110I	CYCGRG	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	208, 244
BmrFI	CCNGG	3 cut(s)	95, 240, 257
BoxI	GACNNNNGTC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	160, 293
BpuMI	CCSGG	2 cut(s)	240, 257
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	93, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 270
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	93, 295
BseLI	CCNNNNNNNGG	2 cut(s)	255, 270
BseSI	GKGCMC	2 cut(s)	194, 317
BsgI	GTGCAG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	181, 263
BshNI	GGYRCC	2 cut(s)	206, 242
BsiHKAI	GWGCWC	1 cut(s)	194
BsiHKCI	CYCGRG	1 cut(s)	157
BsiSI	CCGG	3 cut(s)	239, 249, 256
BslI	CCNNNNNNNGG	2 cut(s)	255, 270
BsmAI	GTCTC	2 cut(s)	44, 64
BsmBI	CGTCTC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	181, 263
Bso31I	GGTCTC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	157
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	194, 317
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	2 cut(s)	29, 204
BspANI	GGCC	2 cut(s)	181, 263
BspLI	GGNNCC	2 cut(s)	208, 244
BspMI	ACCTGC	3 cut(s)	46, 156, 218
BspQI	GCTCTTC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	71
BspT107I	GGYRCC	2 cut(s)	206, 242
BspTNI	GGTCTC	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	93, 295
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	14, 202
BstDSI	CCRYGG	1 cut(s)	295
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstMAI	GTCTC	2 cut(s)	44, 64
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 210, 312
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	204
BstPAI	GACNNNNGTC	1 cut(s)	56
BstSCI	CCNGG	3 cut(s)	93, 238, 255
BstSLI	GKGCMC	2 cut(s)	194, 317
BsuRI	GGCC	2 cut(s)	181, 263
BtgI	CCRYGG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	279
BveI	ACCTGC	3 cut(s)	46, 156, 218
Cac8I	GCNNGC	2 cut(s)	14, 202
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	207, 243
CviAII	CATG	4 cut(s)	46, 86, 201, 296
CviJI	RGCY	4 cut(s)	5, 121, 181, 263
CviKI_1	RGCY	4 cut(s)	5, 121, 181, 263
CviQI	GTAC	2 cut(s)	207, 243
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	4 cut(s)	49, 89, 204, 299
FaiI	YATR	8 cut(s)	26, 47, 77, 87, 151, 202, 287, 297
FatI	CATG	4 cut(s)	45, 85, 200, 295
HaeIII	GGCC	2 cut(s)	181, 263
HapII	CCGG	3 cut(s)	239, 249, 256
HgaI	GACGC	1 cut(s)	61
Hin1II	CATG	4 cut(s)	49, 89, 204, 299
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	3 cut(s)	239, 249, 256
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	111, 264
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	6 cut(s)	45, 153, 165, 172, 192, 225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 210, 312
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	49, 89, 204, 299
KpnI	GGTACC	2 cut(s)	210, 246
LguI	GCTCTTC	1 cut(s)	44
MaeII	ACGT	1 cut(s)	186
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	194, 317
MluCI	AATT	1 cut(s)	136
MnlI	CCTC	6 cut(s)	153, 213, 246, 253, 256, 317
MseI	TTAA	1 cut(s)	319
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	3 cut(s)	239, 249, 256
MspR9I	CCNGG	3 cut(s)	95, 240, 257
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	178, 210, 312
NciI	CCSGG	2 cut(s)	240, 257
NcoI	CCATGG	1 cut(s)	295
NlaIII	CATG	4 cut(s)	49, 89, 204, 299
NlaIV	GGNNCC	2 cut(s)	208, 244
NspI	RCATGY	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	68
PshAI	GACNNNNGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	208, 244
PspXI	VCTCGAGB	1 cut(s)	157
RsaI	GTAC	2 cut(s)	208, 244
RsaNI	GTAC	2 cut(s)	207, 243
RseI	CAYNNNNRTG	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	319
ScrFI	CCNGG	3 cut(s)	95, 240, 257
SduI	GDGCHC	2 cut(s)	194, 317
Sfr274I	CTCGAG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	3 cut(s)	157, 175, 308
SmoI	CTYRAG	3 cut(s)	157, 175, 308
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	1 cut(s)	136
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	2 cut(s)	29, 204
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	3 cut(s)	93, 238, 255
StyI	CCWWGG	1 cut(s)	295
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	71, 158
TasI	AATT	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	319
Tru9I	TTAA	1 cut(s)	319
TscAI	CASTG	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	286
VneI	GTGCAC	1 cut(s)	190
XagI	CCTNNNNNAGG	1 cut(s)	268
XceI	RCATGY	1 cut(s)	204
XhoI	CTCGAG	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.