Rroxscaffold_2G00081220

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001842
Physical Location & Seq
Forward (+)
4194854 .. 4196446
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081220.1

Sequence Viewer

Length: 648 bp
ATGGCTCTCAAAGCCTTCCTCCTACTCTTGGCCACCGTTCTCTTTGCTATCACAACGGCTTCATCTCATGATCTCCATGAGGAACTCAAGATAAAGGCGGCTTATGTCCAAAGCCAAGCACCACCACCACTTCCAATCGTCAAAGCTCCGGCTCCACCACCTCTAGTGACCAAGCCACCCGTAGTTCCTGTGCCTCCAGTTGTGAAGCCACCTACTTATGCTCCACCGCCAAAAGTGATCAAGGCACCCCCTCCAGCACCACCTGTAGCTCCTGTGCCTCCAGTGAAGCCACCTTCTTATGCTCCACCACCAAAAGTGGTCAAGGCACCCCCTCCAGCTCCGCCTCTACCCAAGCCACCGGTTCCTGCGCCTCCAGTGAAGCCTCCCACCTATGCTCCACCACTTCCCCGGTCAAATCAAAAAAGGGTAAGTTTTTGTTACCTTAATTTCTCACCATGGACAGATTGCGTTCCATTGTGTGAACAACGGTGCGCTTTGCATTCGAGGAAGAGGACGTGCATGAGGGCTTGCATGACATGCTGCGACCGCTGCAAATGCGTGCCGCCGGGAACTTCTGGCAACCGGGAAAGATGCGGCAAGTGCTACACTGACATGACCACCCACGGCAACAGATCCAAGTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

215

Amino Acids

23.09

Weight (kDa)

9.71

Isoelectric Point (pI)

76.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 155 - 215 4.1e-20 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 244, 325
AciI CCGC 6 cut(s) 98, 227, 341, 547, 563, 594
AclWI GGATC 1 cut(s) 627
AcoI YGGCCR 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 28
AgeI ACCGGT 1 cut(s) 358
AjiI CACGTC 1 cut(s) 516
AluBI AGCT 3 cut(s) 146, 269, 338
AluI AGCT 3 cut(s) 146, 269, 338
AlwI GGATC 1 cut(s) 627
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 540, 549
AsiGI ACCGGT 1 cut(s) 358
AspLEI GCGC 2 cut(s) 370, 494
AsuC2I CCSGG 3 cut(s) 409, 567, 584
AsuHPI GGTGA 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 644
BalI TGGCCA 1 cut(s) 32
BanI GGYRCC 2 cut(s) 244, 325
BbvI GCAGC 2 cut(s) 527, 536
BceAI ACGGC 2 cut(s) 72, 640
BclI TGATCA 1 cut(s) 237
BcnI CCSGG 3 cut(s) 409, 567, 584
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 5 cut(s) 99, 541, 550, 563, 595
BlsI GCNGC 5 cut(s) 100, 542, 551, 564, 596
Bme1390I CCNGG 3 cut(s) 409, 567, 584
BmgBI CACGTC 1 cut(s) 516
BmiI GGNNCC 4 cut(s) 153, 246, 327, 363
BmrFI CCNGG 3 cut(s) 409, 567, 584
BmsI GCATC 1 cut(s) 581
BpmI CTGGAG 5 cut(s) 180, 237, 264, 318, 357
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 3 cut(s) 409, 567, 584
BsaJI CCNNGG 3 cut(s) 407, 455, 622
BsaWI WCCGGW 1 cut(s) 358
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 379, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 3 cut(s) 197, 281, 374
BseDI CCNNGG 3 cut(s) 407, 455, 622
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 3 cut(s) 197, 281, 374
BseSI GKGCMC 1 cut(s) 644
BseXI GCAGC 2 cut(s) 527, 536
Bsh1285I CGRYCG 1 cut(s) 547
BshFI GGCC 1 cut(s) 32
BshNI GGYRCC 2 cut(s) 244, 325
BshTI ACCGGT 1 cut(s) 358
BsiEI CGRYCG 1 cut(s) 547
BsiSI CCGG 5 cut(s) 149, 359, 409, 566, 583
BslI CCNNNNNNNGG 1 cut(s) 28
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 644
Bsp143I GATC 3 cut(s) 70, 237, 632
Bsp19I CCATGG 1 cut(s) 455
BspACI CCGC 6 cut(s) 98, 227, 341, 547, 563, 594
BspANI GGCC 1 cut(s) 32
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 4 cut(s) 153, 246, 327, 363
BspPI GGATC 1 cut(s) 627
BspT107I GGYRCC 2 cut(s) 244, 325
BsrFI RCCGGY 1 cut(s) 358
BsrI ACTGG 3 cut(s) 197, 281, 374
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 3 cut(s) 407, 455, 622
BssMI GATC 3 cut(s) 70, 237, 632
BssT1I CCWWGG 1 cut(s) 455
Bst4CI ACNGT 2 cut(s) 37, 489
Bst6I CTCTTC 1 cut(s) 503
BstAPI GCANNNNNTGC 1 cut(s) 537
BstC8I GCNNGC 2 cut(s) 529, 560
BstDEI CTNAG 1 cut(s) 645
BstDSI CCRYGG 2 cut(s) 455, 622
BstHHI GCGC 2 cut(s) 370, 494
BstKTI GATC 3 cut(s) 73, 240, 635
BstMBI GATC 3 cut(s) 70, 237, 632
BstMCI CGRYCG 1 cut(s) 547
BstMWI GCNNNNNNNGC 6 cut(s) 11, 537, 546, 549, 555, 600
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 3 cut(s) 407, 565, 582
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 644
BstV1I GCAGC 2 cut(s) 527, 536
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 2 cut(s) 455, 622
BtrI CACGTC 1 cut(s) 516
BtsIMutI CAGTG 3 cut(s) 288, 381, 606
Cac8I GCNNGC 2 cut(s) 529, 560
CciI TCATGA 1 cut(s) 67
CfoI GCGC 2 cut(s) 370, 494
Cfr10I RCCGGY 1 cut(s) 358
CspAI ACCGGT 1 cut(s) 358
CviAII CATG 7 cut(s) 68, 77, 456, 520, 532, 537, 613
DdeI CTNAG 1 cut(s) 645
DpnI GATC 3 cut(s) 72, 239, 634
DpnII GATC 3 cut(s) 70, 237, 632
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
EciI GGCGGA 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 455
FaeI CATG 7 cut(s) 71, 80, 459, 523, 535, 540, 616
FatI CATG 7 cut(s) 67, 76, 455, 519, 531, 536, 612
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 5 cut(s) 99, 541, 550, 563, 595
Fsp4HI GCNGC 5 cut(s) 99, 541, 550, 563, 595
FspBI CTAG 1 cut(s) 164
GlaI GCGC 2 cut(s) 369, 493
GluI GCNGC 5 cut(s) 99, 541, 550, 563, 595
GsuI CTGGAG 5 cut(s) 180, 237, 264, 318, 357
HaeIII GGCC 1 cut(s) 32
HapII CCGG 5 cut(s) 149, 359, 409, 566, 583
HhaI GCGC 2 cut(s) 370, 494
Hin1II CATG 7 cut(s) 71, 80, 459, 523, 535, 540, 616
Hin6I GCGC 2 cut(s) 368, 492
HinP1I GCGC 2 cut(s) 368, 492
HpaII CCGG 5 cut(s) 149, 359, 409, 566, 583
HphI GGTGA 1 cut(s) 444
Hpy166II GTNNAC 1 cut(s) 482
Hpy188III TCNNGA 2 cut(s) 68, 88
Hpy8I GTNNAC 1 cut(s) 482
HpyAV CCTTC 2 cut(s) 25, 303
HpyCH4III ACNGT 2 cut(s) 37, 489
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 4 cut(s) 499, 519, 531, 552
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 537, 546, 549, 555, 600
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 1 cut(s) 515
Hsp92II CATG 7 cut(s) 71, 80, 459, 523, 535, 540, 616
HspAI GCGC 2 cut(s) 368, 492
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 3 cut(s) 70, 237, 632
LmnI GCTCC 7 cut(s) 151, 157, 226, 274, 307, 343, 400
Lsp1109I GCAGC 2 cut(s) 527, 536
LweI GCATC 1 cut(s) 581
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 515
MaeIII GTNAC 2 cut(s) 166, 437
MalI GATC 3 cut(s) 72, 239, 634
MboI GATC 3 cut(s) 70, 237, 632
MboII GAAGA 1 cut(s) 520
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 1 cut(s) 644
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 445
MluNI TGGCCA 1 cut(s) 32
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 1 cut(s) 611
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 549
MspI CCGG 5 cut(s) 149, 359, 409, 566, 583
MspR9I CCNGG 3 cut(s) 409, 567, 584
Mva1269I GAATGC 1 cut(s) 499
MwoI GCNNNNNNNGC 6 cut(s) 11, 537, 546, 549, 555, 600
NciI CCSGG 3 cut(s) 409, 567, 584
NcoI CCATGG 1 cut(s) 455
NdeII GATC 3 cut(s) 70, 237, 632
NlaIII CATG 7 cut(s) 71, 80, 459, 523, 535, 540, 616
NlaIV GGNNCC 4 cut(s) 153, 246, 327, 363
NmuCI GTSAC 1 cut(s) 166
NspI RCATGY 1 cut(s) 540
PagI TCATGA 1 cut(s) 67
PctI GAATGC 1 cut(s) 499
PinAI ACCGGT 1 cut(s) 358
PkrI GCNGC 5 cut(s) 100, 542, 551, 564, 596
PspN4I GGNNCC 4 cut(s) 153, 246, 327, 363
PsuI RGATCY 1 cut(s) 632
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 5 cut(s) 99, 541, 550, 563, 595
Sau3AI GATC 3 cut(s) 70, 237, 632
ScrFI CCNGG 3 cut(s) 409, 567, 584
SduI GDGCHC 1 cut(s) 644
SfaNI GCATC 1 cut(s) 581
SfcI CTRYAG 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 445
SsiI CCGC 6 cut(s) 98, 227, 341, 547, 563, 594
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 3 cut(s) 407, 565, 582
StyI CCWWGG 1 cut(s) 455
TaaI ACNGT 2 cut(s) 37, 489
TaiI ACGT 1 cut(s) 518
TaqI TCGA 1 cut(s) 503
TasI AATT 1 cut(s) 445
TauI GCSGC 3 cut(s) 101, 565, 597
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 3 cut(s) 288, 381, 613
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 2 cut(s) 540, 549
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 3 cut(s) 288, 381, 613
XceI RCATGY 1 cut(s) 540
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.