FvH4_4g35060

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001842
Physical Location & Seq
Reverse (-)
32521924 .. 32522726
803 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35060.t1

Sequence Viewer

Length: 321 bp
ATGTCGTCGCGTTTGCTTCTTCTCGCGGTGGTATTGGTGTTCTGCATAGCGCAGGTTTCAGCTGATGCCGAGGTGGAAGACCATGAAACCAAGGCAGTGGTGAAAGGACCTAACAGAAGACTGTTACCATATCTGAACTGTGATGGGCTATGCAGGGCTCGTTGCAGCTTGCACTCGAGACCAAATAGGTGCAACAGGGCATGTGGAACTTGCTGTGTAAGGTGCAAGTGCGTTCCTCCGGGCACCGCCGGCAACAGAGAGGTCTGTGGATCGTGCTACACTGATATGACCACTCATGGCAACCGCCTCAAGTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

107

Amino Acids

11.56

Weight (kDa)

8.88

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 46 - 106 1.1e-20 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 242
AccII CGCG 2 cut(s) 10, 26
AciI CCGC 3 cut(s) 26, 246, 304
AclWI GGATC 1 cut(s) 277
AluBI AGCT 2 cut(s) 62, 168
AluI AGCT 2 cut(s) 62, 168
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 1 cut(s) 107
BaeGI GKGCMC 2 cut(s) 245, 317
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 2 cut(s) 84, 124
BbvI GCAGC 1 cut(s) 177
BccI CCATC 1 cut(s) 137
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 172
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 2 cut(s) 84, 124
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 69, 90
Bse118I RCCGGY 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 69, 90
BseSI GKGCMC 2 cut(s) 245, 317
BseXI GCAGC 1 cut(s) 177
Bsh1236I CGCG 2 cut(s) 10, 26
BshNI GGYRCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 2 cut(s) 239, 249
BsmAI GTCTC 1 cut(s) 172
Bso31I GGTCTC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 3 cut(s) 160, 245, 317
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 3 cut(s) 26, 246, 304
BspFNI CGCG 2 cut(s) 10, 26
BspLI GGNNCC 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 69, 90
BssMI GATC 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 123, 140
BstC8I GCNNGC 2 cut(s) 170, 250
BstFNI CGCG 2 cut(s) 10, 26
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 272
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 249, 312
BstNSI RCATGY 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 238
BstSLI GKGCMC 2 cut(s) 245, 317
BstUI CGCG 2 cut(s) 10, 26
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 2 cut(s) 84, 124
BstXI CCANNNNNNTGG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 279
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 170, 250
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 107
CviAII CATG 3 cut(s) 83, 201, 296
CviJI RGCY 4 cut(s) 62, 148, 158, 168
CviKI_1 RGCY 4 cut(s) 62, 148, 158, 168
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 3 cut(s) 86, 204, 299
FaiI YATR 7 cut(s) 47, 84, 130, 151, 202, 287, 297
FatI CATG 3 cut(s) 82, 200, 295
Fnu4HI GCNGC 1 cut(s) 166
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 166
GlaI GCGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 166
HapII CCGG 2 cut(s) 239, 249
HhaI GCGC 1 cut(s) 52
Hin1II CATG 3 cut(s) 86, 204, 299
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HpaII CCGG 2 cut(s) 239, 249
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 1 cut(s) 177
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 2 cut(s) 123, 140
HpyCH4V TGCA 6 cut(s) 45, 153, 165, 172, 192, 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 312
Hsp92II CATG 3 cut(s) 86, 204, 299
HspAI GCGC 1 cut(s) 50
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 269
LpnPI CCDG 5 cut(s) 38, 139, 181, 252, 262
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 123
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 3 cut(s) 11, 89, 129
MhlI GDGCHC 3 cut(s) 160, 245, 317
MnlI CCTC 4 cut(s) 64, 246, 253, 317
MroNI GCCGGC 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 2 cut(s) 239, 249
MspR9I CCNGG 1 cut(s) 240
MvnI CGCG 2 cut(s) 10, 26
MwoI GCNNNNNNNGC 2 cut(s) 249, 312
NaeI GCCGGC 1 cut(s) 250
NciI CCSGG 1 cut(s) 240
NdeII GATC 1 cut(s) 269
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 3 cut(s) 86, 204, 299
NlaIV GGNNCC 1 cut(s) 244
NmeAIII GCCGAG 1 cut(s) 94
NspI RCATGY 1 cut(s) 204
PaeR7I CTCGAG 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 167
PpuMI RGGWCCY 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 107
PspPPI RGGWCCY 1 cut(s) 107
PvuII CAGCTG 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 284
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 1 cut(s) 269
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 3 cut(s) 160, 245, 317
SetI ASST 8 cut(s) 57, 64, 75, 112, 170, 191, 224, 264
SfaNI GCATC 1 cut(s) 55
Sfr274I CTCGAG 1 cut(s) 175
SinI GGWCC 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 175, 308
SmoI CTYRAG 2 cut(s) 175, 308
SsiI CCGC 3 cut(s) 26, 246, 304
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 123, 140
TaqI TCGA 1 cut(s) 176
TscAI CASTG 2 cut(s) 102, 286
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 99
TspRI CASTG 2 cut(s) 102, 286
VpaK11BI GGWCC 1 cut(s) 107
XceI RCATGY 1 cut(s) 204
XhoI CTCGAG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.