RLG00000021964

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001842
Physical Location & Seq
Reverse (-)
79594966 .. 79596033
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021964

Sequence Viewer

Length: 612 bp
ATGGCTCTCAAAGCCTTCCTCCTACTCTTGGCCACCGTTCTCTTTGCTACCACAACGGCTTCATCTCATGATCTCCATGAGGAACTCAAGATAAAGGCGGCTTATGTCCAAAGCCAAGCACGACCACCACTTCCAATCGTCAAAGCTCCGGCTCGACCACCTCTAGTGACCAAGCCACCCGTAGTTCCTGTGCCTCCAGTTGTGAAGCCACCTACTTATGCTCCACCGCCAAAAGTGATCAAGGCACCCCCTCCAGCACCACCTGTAGCTCCTGTGCCTCCAGTGAAGCCACCTACTTATGCTCCACCACCAAAAGTGGTCAAGGCACCCCCTCCAGCTCCGCCTCTACCCAAGCCACCAGTTCCTGCGCCTCCAGTGCAGCCTCCCACCTATGCTCCACCACTTCCCCCAGTCAAATCAAAAAAGGATTGCGTTCCATTGTGTGAACAAAGGTGCGCTTTGCATTCGAGGAAGAGGACGTGCATGAGGGCTTGCATGACATGTTGCGACCGCTGCAAATGCGTGCCGCCGGGAACTTCTGGCAACCGGGAAAGATGCGGCAAGTGCTACACTGACATGACCACCCACGGGAACAGATCCAAGTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

204

Amino Acids

21.66

Weight (kDa)

9.82

Isoelectric Point (pI)

77.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 143 - 203 3.7e-20 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 244, 325
AciI CCGC 6 cut(s) 98, 227, 341, 511, 527, 558
AclWI GGATC 1 cut(s) 591
AcoI YGGCCR 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 28, 588
AflIII ACRYGT 1 cut(s) 500
AjiI CACGTC 1 cut(s) 480
AluBI AGCT 3 cut(s) 146, 269, 338
AluI AGCT 3 cut(s) 146, 269, 338
AlwI GGATC 1 cut(s) 591
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 379, 513
AspLEI GCGC 2 cut(s) 370, 458
AsuC2I CCSGG 2 cut(s) 531, 548
BaeGI GKGCMC 1 cut(s) 608
BalI TGGCCA 1 cut(s) 32
BanI GGYRCC 2 cut(s) 244, 325
BbvI GCAGC 2 cut(s) 391, 500
BceAI ACGGC 1 cut(s) 72
BclI TGATCA 1 cut(s) 237
BcnI CCSGG 2 cut(s) 531, 548
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 5 cut(s) 99, 380, 514, 527, 559
BlsI GCNGC 5 cut(s) 100, 381, 515, 528, 560
Bme1390I CCNGG 2 cut(s) 531, 548
BmgBI CACGTC 1 cut(s) 480
BmiI GGNNCC 2 cut(s) 246, 327
BmrFI CCNGG 2 cut(s) 531, 548
BmrI ACTGGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 545
BmuI ACTGGG 1 cut(s) 404
BpmI CTGGAG 5 cut(s) 180, 237, 264, 318, 357
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 531, 548
BsaJI CCNNGG 1 cut(s) 586
BsaXI ACNNNNNCTCC 6 cut(s) 205, 235, 286, 316, 379, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 588
Bse1I ACTGG 5 cut(s) 197, 281, 359, 374, 410
BseDI CCNNGG 1 cut(s) 586
BseLI CCNNNNNNNGG 2 cut(s) 28, 588
BseNI ACTGG 5 cut(s) 197, 281, 359, 374, 410
BseSI GKGCMC 1 cut(s) 608
BseXI GCAGC 2 cut(s) 391, 500
BsgI GTGCAG 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 511
BshFI GGCC 1 cut(s) 32
BshNI GGYRCC 2 cut(s) 244, 325
BsiEI CGRYCG 1 cut(s) 511
BsiSI CCGG 3 cut(s) 149, 530, 547
BslI CCNNNNNNNGG 2 cut(s) 28, 588
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 608
Bsp143I GATC 3 cut(s) 70, 237, 596
BspACI CCGC 6 cut(s) 98, 227, 341, 511, 527, 558
BspANI GGCC 1 cut(s) 32
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 246, 327
BspPI GGATC 1 cut(s) 591
BspT107I GGYRCC 2 cut(s) 244, 325
BsrI ACTGG 5 cut(s) 197, 281, 359, 374, 410
BssECI CCNNGG 1 cut(s) 586
BssMI GATC 3 cut(s) 70, 237, 596
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 493, 524
BstDEI CTNAG 1 cut(s) 609
BstDSI CCRYGG 1 cut(s) 586
BstHHI GCGC 2 cut(s) 370, 458
BstKTI GATC 3 cut(s) 73, 240, 599
BstMBI GATC 3 cut(s) 70, 237, 596
BstMCI CGRYCG 1 cut(s) 511
BstMWI GCNNNNNNNGC 5 cut(s) 11, 376, 513, 519, 564
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 2 cut(s) 529, 546
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 608
BstV1I GCAGC 2 cut(s) 391, 500
BstX2I RGATCY 1 cut(s) 596
BstYI RGATCY 1 cut(s) 596
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 1 cut(s) 586
BtrI CACGTC 1 cut(s) 480
BtsIMutI CAGTG 3 cut(s) 288, 381, 570
Cac8I GCNNGC 2 cut(s) 493, 524
CaiI CAGNNNCTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 67
CfoI GCGC 2 cut(s) 370, 458
CviAII CATG 6 cut(s) 68, 77, 484, 496, 501, 577
DdeI CTNAG 1 cut(s) 609
DpnI GATC 3 cut(s) 72, 239, 598
DpnII GATC 3 cut(s) 70, 237, 596
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
EciI GGCGGA 1 cut(s) 330
FaeI CATG 6 cut(s) 71, 80, 487, 499, 504, 580
FalI AAGNNNNNCTT 2 cut(s) 442, 474
FatI CATG 6 cut(s) 67, 76, 483, 495, 500, 576
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 5 cut(s) 99, 380, 514, 527, 559
Fsp4HI GCNGC 5 cut(s) 99, 380, 514, 527, 559
FspBI CTAG 1 cut(s) 164
GlaI GCGC 2 cut(s) 369, 457
GluI GCNGC 5 cut(s) 99, 380, 514, 527, 559
GsuI CTGGAG 5 cut(s) 180, 237, 264, 318, 357
HaeIII GGCC 1 cut(s) 32
HapII CCGG 3 cut(s) 149, 530, 547
HhaI GCGC 2 cut(s) 370, 458
Hin1II CATG 6 cut(s) 71, 80, 487, 499, 504, 580
Hin6I GCGC 2 cut(s) 368, 456
HinP1I GCGC 2 cut(s) 368, 456
HpaII CCGG 3 cut(s) 149, 530, 547
Hpy166II GTNNAC 1 cut(s) 446
Hpy188III TCNNGA 2 cut(s) 68, 88
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 5 cut(s) 379, 463, 483, 495, 516
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 376, 513, 519, 564
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 1 cut(s) 479
Hsp92II CATG 6 cut(s) 71, 80, 487, 499, 504, 580
HspAI GCGC 2 cut(s) 368, 456
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 3 cut(s) 70, 237, 596
LmnI GCTCC 6 cut(s) 151, 226, 274, 307, 343, 400
Lsp1109I GCAGC 2 cut(s) 391, 500
LweI GCATC 1 cut(s) 545
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 72, 239, 598
MboI GATC 3 cut(s) 70, 237, 596
MboII GAAGA 1 cut(s) 484
MflI RGATCY 1 cut(s) 596
MhlI GDGCHC 1 cut(s) 608
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 513
MspI CCGG 3 cut(s) 149, 530, 547
MspR9I CCNGG 2 cut(s) 531, 548
Mva1269I GAATGC 1 cut(s) 463
MwoI GCNNNNNNNGC 5 cut(s) 11, 376, 513, 519, 564
NciI CCSGG 2 cut(s) 531, 548
NdeII GATC 3 cut(s) 70, 237, 596
NlaIII CATG 6 cut(s) 71, 80, 487, 499, 504, 580
NlaIV GGNNCC 2 cut(s) 246, 327
NmuCI GTSAC 1 cut(s) 166
NspI RCATGY 1 cut(s) 504
PagI TCATGA 1 cut(s) 67
PciI ACATGT 1 cut(s) 500
PctI GAATGC 1 cut(s) 463
PkrI GCNGC 5 cut(s) 100, 381, 515, 528, 560
PscI ACATGT 1 cut(s) 500
PspN4I GGNNCC 2 cut(s) 246, 327
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 1 cut(s) 596
RseI CAYNNNNRTG 1 cut(s) 575
SatI GCNGC 5 cut(s) 99, 380, 514, 527, 559
Sau3AI GATC 3 cut(s) 70, 237, 596
ScrFI CCNGG 2 cut(s) 531, 548
SduI GDGCHC 1 cut(s) 608
SfaNI GCATC 1 cut(s) 545
SfcI CTRYAG 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SsiI CCGC 6 cut(s) 98, 227, 341, 511, 527, 558
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 529, 546
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 482
TaqI TCGA 2 cut(s) 154, 467
TauI GCSGC 3 cut(s) 101, 529, 561
TscAI CASTG 3 cut(s) 288, 381, 577
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 2 cut(s) 379, 513
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 3 cut(s) 288, 381, 577
XceI RCATGY 1 cut(s) 504
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.