Rh1DG196900

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001842
Physical Location & Seq
Forward (+)
38800247 .. 38800606
360 bp
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UTR
Exon/CDS
Intron
Rh1DG196900.1

Sequence Viewer

Length: 360 bp
ATGACCTCCCCCACTCCATCATCTCCAATCAAACCCTCGACTCCACCAGCTCAAGGAAGGTCACCACCTTCGTCACATCTGAAAAAGGCACCACCACCTCCTCCAGCACCTCAAGATGACGATGATGTGGCACCAGCTCCTGCACCTCAAGATGACAATGCTCCTGTTGCAGATTGCATAACGTTGTGTGATCAAAGGTGTGCGTTTCATCAAAATAAGAAAGTGTGCATGGATGTATGCATGATTTTTTGTGATCGCTGCAACTGTGTTCCACCTGGACCTTTTGGCCGCAACAAGGAAACATGTGGCCCCTGCTACACTCAAATACTCATCCAAGAATACAAGTACAATTGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

119

Amino Acids

12.87

Weight (kDa)

6.02

Isoelectric Point (pI)

83.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 58 - 118 1.9e-14 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 88, 130
AciI CCGC 1 cut(s) 289
AclI AACGTT 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 286
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 53, 295
AflIII ACRYGT 1 cut(s) 302
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 2 cut(s) 50, 137
AluI AGCT 2 cut(s) 50, 137
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 2 cut(s) 286, 307
ApeKI GCWGC 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 278, 308
AsuHPI GGTGA 1 cut(s) 54
AvaII GGWCC 1 cut(s) 278
BanI GGYRCC 2 cut(s) 88, 130
BbvI GCAGC 1 cut(s) 245
BccI CCATC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 276
BclI TGATCA 1 cut(s) 190
BisI GCNGC 2 cut(s) 259, 289
BlsI GCNGC 2 cut(s) 260, 290
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 278, 308
BmiI GGNNCC 3 cut(s) 90, 132, 310
BmrFI CCNGG 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 87
BpuEI CTTGAG 3 cut(s) 36, 96, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 295
BseBI CCWGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 238, 330
BseLI CCNNNNNNNGG 2 cut(s) 53, 295
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 2 cut(s) 288, 309
BshNI GGYRCC 2 cut(s) 88, 130
BslI CCNNNNNNNGG 2 cut(s) 53, 295
BsnI GGCC 2 cut(s) 288, 309
Bsp143I GATC 2 cut(s) 190, 253
BspACI CCGC 1 cut(s) 289
BspANI GGCC 2 cut(s) 288, 309
BspLI GGNNCC 3 cut(s) 90, 132, 310
BspT107I GGYRCC 2 cut(s) 88, 130
BssMI GATC 2 cut(s) 190, 253
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 266
BstEII GGTNACC 1 cut(s) 60
BstF5I GGATG 2 cut(s) 238, 330
BstKTI GATC 2 cut(s) 193, 256
BstMBI GATC 2 cut(s) 190, 253
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 306
BstPI GGTNACC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 245
BsuRI GGCC 2 cut(s) 288, 309
BtsCI GGATG 2 cut(s) 238, 330
CaiI CAGNNNCTG 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 278, 308
Csp6I GTAC 1 cut(s) 346
CviAII CATG 3 cut(s) 229, 241, 303
CviJI RGCY 4 cut(s) 50, 137, 288, 309
CviKI_1 RGCY 4 cut(s) 50, 137, 288, 309
CviQI GTAC 1 cut(s) 346
DpnI GATC 2 cut(s) 192, 255
DpnII GATC 2 cut(s) 190, 253
EaeI YGGCCR 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 278
Eco91I GGTNACC 1 cut(s) 60
EcoO65I GGTNACC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 242
FaeI CATG 3 cut(s) 232, 244, 306
FaiI YATR 5 cut(s) 179, 230, 238, 242, 304
FatI CATG 3 cut(s) 228, 240, 302
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 259, 289
FokI GGATG 2 cut(s) 245, 317
Fsp4HI GCNGC 2 cut(s) 259, 289
GluI GCNGC 2 cut(s) 259, 289
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 2 cut(s) 288, 309
Hin1II CATG 3 cut(s) 232, 244, 306
HinfI GANTC 1 cut(s) 40
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 2 cut(s) 113, 149
HpyAV CCTTC 2 cut(s) 51, 78
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 7 cut(s) 143, 170, 177, 228, 240, 261, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 3 cut(s) 232, 244, 306
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 190, 253
LmnI GCTCC 2 cut(s) 142, 166
LpnPI CCDG 8 cut(s) 60, 117, 147, 153, 177, 261, 288, 325
Lsp1109I GCAGC 1 cut(s) 245
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 60, 72
MalI GATC 2 cut(s) 192, 255
MboI GATC 2 cut(s) 190, 253
MfeI CAATTG 1 cut(s) 349
MluCI AATT 1 cut(s) 349
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 6 cut(s) 16, 46, 108, 111, 120, 156
Mph1103I ATGCAT 1 cut(s) 242
MseI TTAA 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 276
MunI CAATTG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 2 cut(s) 190, 253
NlaIII CATG 3 cut(s) 232, 244, 306
NlaIV GGNNCC 3 cut(s) 90, 132, 310
NmuCI GTSAC 2 cut(s) 60, 72
NsiI ATGCAT 1 cut(s) 242
NspI RCATGY 1 cut(s) 306
PciI ACATGT 1 cut(s) 302
PkrI GCNGC 2 cut(s) 260, 290
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PscI ACATGT 1 cut(s) 302
Psp1406I AACGTT 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 274
PspEI GGTNACC 1 cut(s) 60
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 3 cut(s) 90, 132, 310
PspPI GGNCC 2 cut(s) 278, 308
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 2 cut(s) 259, 289
Sau3AI GATC 2 cut(s) 190, 253
Sau96I GGNCC 2 cut(s) 278, 308
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 276
SinI GGWCC 1 cut(s) 278
SmlI CTYRAG 3 cut(s) 51, 111, 147
SmoI CTYRAG 3 cut(s) 51, 111, 147
Sse9I AATT 1 cut(s) 349
SsiI CCGC 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 38
TasI AATT 1 cut(s) 349
TatI WGTACW 1 cut(s) 345
TauI GCSGC 1 cut(s) 291
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TseFI GTSAC 2 cut(s) 60, 72
TseI GCWGC 1 cut(s) 258
Tsp45I GTSAC 2 cut(s) 60, 72
TspDTI ATGAA 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 278
XceI RCATGY 1 cut(s) 306
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.