Rh4DG422000

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001842
Physical Location & Seq
Reverse (-)
62969648 .. 62971118
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG422000.1

Sequence Viewer

Length: 321 bp
ATGGCGTCACGTTTGCTTCTTGTCGTGGCGGTTTTGGTCTTCTGCATAGCACAGGTTTCAGCTGATGCCAAGGTGGAAGACCATGAAACCAAGGCGGTGGTGAAAGGACCTAACAGAAGACTGTTACCATATCTGAACTGTGAAGGGCTATGTAAGGCTCGTTGCAGCTTGCACTCGAGGCCAAATAGGTGCAACAGGGCATGTGGAACTTGCTGTGTAAGGTGCAAGTGTGTTCCTCCGGGCACCGCGGGCAATAGAGAGGTCTGTGGATCATGCTATACTGATATGACCACTCATGGCAACCGCCTCAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

106

Amino Acids

11.51

Weight (kDa)

9.08

Isoelectric Point (pI)

27.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 46 - 106 8.2e-21 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccII CGCG 1 cut(s) 248
AciI CCGC 5 cut(s) 29, 95, 246, 248, 304
AclWI GGATC 1 cut(s) 277
AcyI GRCGYC 1 cut(s) 5
AluBI AGCT 2 cut(s) 62, 168
AluI AGCT 2 cut(s) 62, 168
AlwI GGATC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 1 cut(s) 107
BaeGI GKGCMC 2 cut(s) 245, 317
BanI GGYRCC 1 cut(s) 242
BbsI GAAGAC 3 cut(s) 31, 84, 124
BbvI GCAGC 1 cut(s) 177
BcnI CCSGG 1 cut(s) 240
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 3 cut(s) 31, 84, 124
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 69, 90, 246
BseDI CCNNGG 3 cut(s) 69, 90, 246
BseSI GKGCMC 2 cut(s) 245, 317
BseXI GCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 181
BshNI GGYRCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 239
BsnI GGCC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 2 cut(s) 245, 317
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 5 cut(s) 29, 95, 246, 248, 304
BspANI GGCC 1 cut(s) 181
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 69, 90, 246
BssMI GATC 1 cut(s) 269
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 69, 90
Bst4CI ACNGT 2 cut(s) 123, 140
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 170, 250
BstDSI CCRYGG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 248
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 3 cut(s) 178, 249, 312
BstNSI RCATGY 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 238
BstSLI GKGCMC 2 cut(s) 245, 317
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 3 cut(s) 31, 84, 124
BstXI CCANNNNNNTGG 1 cut(s) 97
BsuRI GGCC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 246
Cac8I GCNNGC 2 cut(s) 170, 250
Cfr13I GGNCC 1 cut(s) 107
Cfr42I CCGCGG 1 cut(s) 249
CviAII CATG 4 cut(s) 83, 201, 273, 296
CviJI RGCY 5 cut(s) 62, 148, 158, 168, 181
CviKI_1 RGCY 5 cut(s) 62, 148, 158, 168, 181
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 69, 90
Eco47I GGWCC 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 69, 90
ErhI CCWWGG 2 cut(s) 69, 90
FaeI CATG 4 cut(s) 86, 204, 276, 299
FaiI YATR 9 cut(s) 47, 84, 130, 151, 202, 274, 279, 287, 297
FatI CATG 4 cut(s) 82, 200, 272, 295
FauI CCCGC 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 181
HapII CCGG 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 86, 204, 276, 299
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 123, 140
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 5 cut(s) 45, 165, 172, 192, 225
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 249, 312
HpySE526I ACGT 1 cut(s) 10
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 86, 204, 276, 299
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 1 cut(s) 269
LpnPI CCDG 3 cut(s) 38, 181, 252
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 55
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 2 cut(s) 6, 123
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 3 cut(s) 31, 89, 129
MhlI GDGCHC 2 cut(s) 245, 317
MnlI CCTC 4 cut(s) 171, 246, 253, 317
MseI TTAA 1 cut(s) 319
MspA1I CMGCKG 2 cut(s) 62, 248
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 178, 249, 312
NciI CCSGG 1 cut(s) 240
NdeII GATC 1 cut(s) 269
NlaIII CATG 4 cut(s) 86, 204, 276, 299
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 6
NspI RCATGY 1 cut(s) 204
PaeR7I CTCGAG 1 cut(s) 175
PkrI GCNGC 1 cut(s) 167
PpuMI RGGWCCY 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 107
PspPPI RGGWCCY 1 cut(s) 107
PspXI VCTCGAGB 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 62
SacII CCGCGG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 1 cut(s) 269
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 2 cut(s) 245, 317
SetI ASST 9 cut(s) 13, 57, 64, 75, 112, 170, 191, 224, 264
SfaNI GCATC 1 cut(s) 55
Sfr274I CTCGAG 1 cut(s) 175
Sfr303I CCGCGG 1 cut(s) 249
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 175
SmlI CTYRAG 2 cut(s) 175, 308
SmoI CTYRAG 2 cut(s) 175, 308
SsiI CCGC 5 cut(s) 29, 95, 246, 248, 304
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 2 cut(s) 69, 90
TaaI ACNGT 2 cut(s) 123, 140
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 176
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 107
XceI RCATGY 1 cut(s) 204
XhoI CTCGAG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.