Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001842

Physical Location & Seq

Genomic Coordinates Reverse (-)

87149345 .. 87150894

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG644700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCTTTCAAAGCTGCGCTCCTGTTACTTGTCACTAGTCTTTTGGTGACTTCAACGGTTTCTGATCACCCATTGAAATGGGATATTGAAGACGGAGTGGGTGCAATTGTGGAGGGCATTACTGGTGGCGCATTGCGATATGGAGGACATGGTGATGATTATGCTGATGAACCTCCGGTAAATTCACCACCTTATATGTATTCGTACTTTCGTAGCATGCTGATGAAAGTTAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.63

Weight (kDa)

4.73

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14940 FvH4_4g35060 FvH4_6g50260 FvH4_6g50260
malus_domestica	MD09G1038100.v1.1 MD13G1086500.v1.1 MD16G1086000.v1.1 MD17G1039200.v1.1 MD17G1039400.v1.1
prunus_persica	Prupe.1G260200_v2.0.a1 Prupe.1G260200_v2.0.a1 Prupe.3G279800_v2.0.a1 Prupe.5G178400_v2.0.a1
pyrus_communis	pycom13g07470 pycom17g03540
rosa_chinensis	RchiOBHm_Chr2g0170521 RchiOBHm_Chr4g0444681
rosa_laevigata	RLG00000002282 RLG00000005815 RLG00000021964
rosa_multiflora	Rmu_co8502627.1_g000001 Rmu_sc0000172.1_g000002 Rmu_sc0009395.1_g000002 Rmu_sc0009395.1_g000011 Rmu_sc0010307.1_g000007
rosa_roxburghii	Rroxscaffold_2G00081220 Rroxscaffold_5G00385120 Rroxscaffold_7G00211030
rosa_rugosa	Rorug02G0548900 Rorug02G0548900 Rorug02G0549700 Rorug02G0549700 Rorug04G0354300
rosa_samantha	Rh1BG166100 Rh1DG196900 Rh2AG620900 Rh2BG632000 Rh2CG601600 Rh2CG602200 Rh2DG644700 Rh4AG414400 Rh4BG426100 Rh4CG441000 Rh4DG422000
rosa_wichuraiana	Rw2G051480 Rw2G051530 Rw4G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	181
AfaI	GTAC	1 cut(s)	206
AgsI	TTSAA	4 cut(s)	10, 54, 76, 89
AhlI	ACTAGT	1 cut(s)	35
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	19, 131
AsuHPI	GGTGA	4 cut(s)	58, 59, 164, 177
BbsI	GAAGAC	1 cut(s)	96
BclI	TGATCA	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	1 cut(s)	36
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	19, 131
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	2 cut(s)	19, 131
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	2 cut(s)	149, 217
CviJI	RGCY	2 cut(s)	5, 14
CviKI_1	RGCY	2 cut(s)	5, 14
CviQI	GTAC	1 cut(s)	205
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
FaeI	CATG	2 cut(s)	152, 220
FaiI	YATR	6 cut(s)	141, 150, 162, 195, 197, 218
FatI	CATG	2 cut(s)	148, 216
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	2 cut(s)	18, 130
GluI	GCNGC	1 cut(s)	15
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	2 cut(s)	19, 131
Hin1II	CATG	2 cut(s)	152, 220
Hin6I	GCGC	2 cut(s)	17, 129
HinP1I	GCGC	2 cut(s)	17, 129
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	4 cut(s)	58, 59, 164, 177
Hpy188I	TCNGA	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	152, 220
HspAI	GCGC	2 cut(s)	17, 129
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	3 cut(s)	35, 108, 189
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	24, 31, 46
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	101
MfeI	CAATTG	1 cut(s)	105
MluCI	AATT	3 cut(s)	105, 181, 232
MnlI	CCTC	3 cut(s)	106, 137, 183
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	3 cut(s)	76, 153, 221
MspI	CCGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	152, 220
NmuCI	GTSAC	2 cut(s)	31, 46
NspI	RCATGY	1 cut(s)	220
PaeI	GCATGC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	3 cut(s)	76, 153, 221
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	64
SetI	ASST	3 cut(s)	16, 175, 193
SgeI	CNNG	7 cut(s)	34, 41, 48, 135, 161, 188, 229
SmiMI	CAYNNNNRTG	3 cut(s)	76, 153, 221
SpeI	ACTAGT	1 cut(s)	35
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	3 cut(s)	105, 181, 232
SspMI	CTAG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	3 cut(s)	105, 181, 232
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseFI	GTSAC	2 cut(s)	31, 46
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	31, 46
TspDTI	ATGAA	2 cut(s)	183, 239
TspGWI	ACGGA	1 cut(s)	108
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.