pycom17g03540

Gibberellin-regulated protein 14-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001842
Physical Location & Seq
Forward (+)
2347394 .. 2348418
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g03540.1

Sequence Viewer

Length: 459 bp
ATGGCTTACAAAACCATGCTCCTTCTCTTTGCAACTGTTCTCCTTTTCACTGCTAGGGTTACTTATGTCAAGGCACCAGCTCCGCAACCTCTAGTCAAGGCTCCAGCTCCGCCGCCTCTTGTGGTCAAGGCACCCAGTCCACCACTTTCCAAGCCACCGTCTCCACCACTTGCCAAGCCACCATCTCCACCATATACCAAGCCACCAACTCCTGTCAGTCCCCCAGTGATGCCACCCACTTATCCACCACTTCCTCCGGTTAGGTCCAAAGCAGATTGCATCCCATTGTGTGACAAGAGGTGCATGCTGCATTCAAGGAAAAGGCTGTGCATGAGAGCTTGCATGACGTGCTGCGACCGTTGCCGCTGCGTTCCTCCGGGAACATTCGGCAACCAGGAAAGATGCGGCAAGTGCTACACCGATATGGTCACCCATGGCAACAGAACCAAATGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

153

Amino Acids

16.59

Weight (kDa)

9.72

Isoelectric Point (pI)

76.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 92 - 152 3.4e-20 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 73, 130
AciI CCGC 5 cut(s) 83, 110, 113, 364, 405
AgsI TTSAA 1 cut(s) 315
AjiI CACGTC 1 cut(s) 348
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 3 cut(s) 80, 107, 338
AluI AGCT 3 cut(s) 80, 107, 338
Alw26I GTCTC 1 cut(s) 165
ApeKI GCWGC 3 cut(s) 307, 351, 366
AspS9I GGNCC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 1 cut(s) 264
BanI GGYRCC 2 cut(s) 73, 130
BbvI GCAGC 3 cut(s) 294, 338, 353
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 395
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 2 cut(s) 54, 92
BisI GCNGC 6 cut(s) 113, 308, 352, 364, 367, 406
BlsI GCNGC 6 cut(s) 114, 309, 353, 365, 368, 407
Bme1390I CCNGG 2 cut(s) 378, 395
Bme18I GGWCC 1 cut(s) 264
BmgBI CACGTC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 3 cut(s) 75, 102, 132
BmrFI CCNGG 2 cut(s) 378, 395
BmrI ACTGGG 2 cut(s) 129, 218
BmsI GCATC 3 cut(s) 219, 288, 392
BmuI ACTGGG 2 cut(s) 129, 218
BpmI CTGGAG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 433
BsaWI WCCGGW 1 cut(s) 256
Bse1I ACTGG 2 cut(s) 135, 224
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 1 cut(s) 279
BseNI ACTGG 2 cut(s) 135, 224
BseXI GCAGC 3 cut(s) 294, 338, 353
Bsh1285I CGRYCG 1 cut(s) 358
BshNI GGYRCC 2 cut(s) 73, 130
BsiEI CGRYCG 1 cut(s) 358
BsiSI CCGG 2 cut(s) 257, 377
BslFI GGGAC 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 165
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 204
BsmI GAATGC 1 cut(s) 310
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 5 cut(s) 83, 110, 113, 364, 405
BspLI GGNNCC 3 cut(s) 75, 102, 132
BspT107I GGYRCC 2 cut(s) 73, 130
BsrI ACTGG 2 cut(s) 135, 224
BssECI CCNNGG 1 cut(s) 433
BssT1I CCWWGG 1 cut(s) 433
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 3 cut(s) 37, 159, 359
BstAPI GCANNNNNTGC 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 305, 340
BstDSI CCRYGG 1 cut(s) 433
BstEII GGTNACC 1 cut(s) 427
BstF5I GGATG 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 165
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 3 cut(s) 348, 360, 411
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 307
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 376, 393
BstV1I GCAGC 3 cut(s) 294, 338, 353
BtgI CCRYGG 1 cut(s) 433
BtrI CACGTC 1 cut(s) 348
BtsCI GGATG 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 48, 231
Cac8I GCNNGC 2 cut(s) 305, 340
Cfr13I GGNCC 1 cut(s) 264
CviAII CATG 5 cut(s) 16, 304, 331, 343, 434
CviJI RGCY 9 cut(s) 5, 80, 101, 107, 154, 178, 202, 325, 338
CviKI_1 RGCY 9 cut(s) 5, 80, 101, 107, 154, 178, 202, 325, 338
EciI GGCGGA 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 264
Eco91I GGTNACC 1 cut(s) 427
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 433
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 5 cut(s) 19, 307, 334, 346, 437
FaiI YATR 9 cut(s) 17, 66, 193, 195, 305, 332, 344, 425, 435
FaqI GGGAC 1 cut(s) 204
FatI CATG 5 cut(s) 15, 303, 330, 342, 433
Fnu4HI GCNGC 6 cut(s) 113, 308, 352, 364, 367, 406
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 6 cut(s) 113, 308, 352, 364, 367, 406
FspBI CTAG 2 cut(s) 54, 92
GluI GCNGC 6 cut(s) 113, 308, 352, 364, 367, 406
GsuI CTGGAG 1 cut(s) 87
HapII CCGG 2 cut(s) 257, 377
Hin1II CATG 5 cut(s) 19, 307, 334, 346, 437
HpaII CCGG 2 cut(s) 257, 377
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 3 cut(s) 37, 159, 359
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 6 cut(s) 32, 279, 303, 310, 330, 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 348, 360, 411
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 5 cut(s) 19, 307, 334, 346, 437
LmnI GCTCC 4 cut(s) 24, 85, 106, 112
LpnPI CCDG 9 cut(s) 90, 117, 148, 225, 237, 270, 380, 390, 407
Lsp1109I GCAGC 3 cut(s) 294, 338, 353
LweI GCATC 3 cut(s) 219, 288, 392
MaeI CTAG 2 cut(s) 54, 92
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 3 cut(s) 58, 290, 427
MnlI CCTC 5 cut(s) 99, 126, 264, 291, 384
MslI CAYNNNNRTG 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 2 cut(s) 257, 377
MspR9I CCNGG 2 cut(s) 378, 395
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 3 cut(s) 348, 360, 411
NciI CCSGG 1 cut(s) 378
NcoI CCATGG 1 cut(s) 433
NlaIII CATG 5 cut(s) 19, 307, 334, 346, 437
NlaIV GGNNCC 3 cut(s) 75, 102, 132
NmuCI GTSAC 2 cut(s) 290, 427
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PctI GAATGC 1 cut(s) 310
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 6 cut(s) 114, 309, 353, 365, 368, 407
Psp6I CCWGG 1 cut(s) 393
PspEI GGTNACC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 3 cut(s) 75, 102, 132
PspPI GGNCC 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 422
SatI GCNGC 6 cut(s) 113, 308, 352, 364, 367, 406
Sau96I GGNCC 1 cut(s) 264
ScrFI CCNGG 2 cut(s) 378, 395
SetI ASST 7 cut(s) 82, 91, 109, 266, 302, 340, 350
SfaNI GCATC 3 cut(s) 219, 288, 392
SinI GGWCC 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 422
SphI GCATGC 1 cut(s) 307
SsiI CCGC 5 cut(s) 83, 110, 113, 364, 405
SspMI CTAG 2 cut(s) 54, 92
StyD4I CCNGG 2 cut(s) 376, 393
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 3 cut(s) 37, 159, 359
TaiI ACGT 1 cut(s) 350
TauI GCSGC 3 cut(s) 115, 366, 408
TscAI CASTG 2 cut(s) 55, 231
TseFI GTSAC 2 cut(s) 290, 427
TseI GCWGC 3 cut(s) 307, 351, 366
Tsp45I GTSAC 2 cut(s) 290, 427
TspRI CASTG 2 cut(s) 55, 231
VpaK11BI GGWCC 1 cut(s) 264
XceI RCATGY 1 cut(s) 307
XspI CTAG 2 cut(s) 54, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.