Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000172.1

Orthogroup ID

OG0001842

Physical Location & Seq

Genomic Coordinates Reverse (-)

7528 .. 10171

Gene Structure 2644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000172.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

atggctttcaaagctgcgctcctgttacttgtcactagtcttttggtgacttcaacggtttctgatcacccattgaaatgggatattgaagacggagtgggtgcaattgtggggggcattactggtggcgcgttggtcgagattgatatagcaccactcttacgttttacttttctagccgccacctccaccccagaaaacaccgccaccggctccagtgaagtcaccatcaccggctccgacatcccgaggaaatgcaccggctccggcacctcaagcaaatgcaccggctccggcaccccaagcaaatgcaccggctcccccacctcgaaggagtacaccggctccggcacccagagcaaatgcaccagatcccccacccccaccccgacccccggtacccgctccacccccgacgacaacaaccctttgtttggcttgatccttctacctgccgctctcgctgcctctgctgctggcgctgctggcggccttggtggggctatcatatctagcttcgaagctgcagctacctctgcagctgccgttgcagctgcagatgttctccaagaaattttaaaacataagaaaaatgaaacacctcccggtaagcgtaattgcacgtgctcgtcaggtgggaaggaaccttctccagttaggacctcccccgctccaccatctccaatcaaaccttcgactccaccaactcaaggaaggtcaccaccttcgccacctctgaaaaggacaccaccatctctgccacctttaaaaaaggcaccaccaccaccaccggaggaagtagagggagagacaccagctccctcacctcaagatgacaacttattggctctatccccttttatagacgcaccctttccttcacctctggcaagtgcacccgctccttcacctcgggcaagcgcacccgctccttcacctctggcaaatgcacccgctcctattggaggcggtggcggtggtggatccaaatctaaagcaggaggcggagggactatccttggcggtgatattggaaaaaccatctcagacatgggtagtcataagacccgtgaaaatttaaacactaagggaacgccttatccacatcagtgtaggtgcccaaaatcttctaagacctcccccactccaccatctccaatcaaaccctcgactccaccagctcaaagaaggtcaccaccttcgtcacctctgaaaaaggcaccaccacctctcctagcttcaaaaaaggcaccagtaccagcacctccaccagctctagcacctcaagatgatgatgatgtggcaccagctcctgcacctcaagatgacaacactcctgttgcagattgcataacgttatgtgatcagaggtgtgcgtttcatcaaaataagaaagtgtgcacggatgtgtgcatgatttgttgtgaccgctgcaactgtgttccacctggaccttctaaccgcaacaaggaaacatgtggcctctgctacactcaagtacttatccaagaatacaagtacaattgcccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

510

Amino Acids

51.68

Weight (kDa)

8.67

Isoelectric Point (pI)

72.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14940 FvH4_4g35060 FvH4_6g50260 FvH4_6g50260
malus_domestica	MD09G1038100.v1.1 MD13G1086500.v1.1 MD16G1086000.v1.1 MD17G1039200.v1.1 MD17G1039400.v1.1
prunus_persica	Prupe.1G260200_v2.0.a1 Prupe.1G260200_v2.0.a1 Prupe.3G279800_v2.0.a1 Prupe.5G178400_v2.0.a1
pyrus_communis	pycom13g07470 pycom17g03540
rosa_chinensis	RchiOBHm_Chr2g0170521 RchiOBHm_Chr4g0444681
rosa_laevigata	RLG00000002282 RLG00000005815 RLG00000021964
rosa_multiflora	Rmu_co8502627.1_g000001 Rmu_sc0000172.1_g000002 Rmu_sc0009395.1_g000002 Rmu_sc0009395.1_g000011 Rmu_sc0010307.1_g000007
rosa_roxburghii	Rroxscaffold_2G00081220 Rroxscaffold_5G00385120 Rroxscaffold_7G00211030
rosa_rugosa	Rorug02G0548900 Rorug02G0548900 Rorug02G0549700 Rorug02G0549700 Rorug04G0354300
rosa_samantha	Rh1BG166100 Rh1DG196900 Rh2AG620900 Rh2BG632000 Rh2CG601600 Rh2CG602200 Rh2DG644700 Rh4AG414400 Rh4BG426100 Rh4CG441000 Rh4DG422000
rosa_wichuraiana	Rw2G051480 Rw2G051530 Rw4G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
Acc65I	GGTACC	1 cut(s)	398
AccB1I	GGYRCC	9 cut(s)	269, 296, 350, 398, 775, 1116, 1219, 1249, 1303
AccBSI	CCGCTC	6 cut(s)	405, 458, 671, 902, 929, 956
AccII	CGCG	1 cut(s)	131
AclI	AACGTT	1 cut(s)	1355
AclWI	GGATC	4 cut(s)	366, 436, 978, 991
AcsI	RAATTY	2 cut(s)	573, 1075
AcvI	CACGTG	1 cut(s)	624
AfaI	GTAC	5 cut(s)	338, 400, 1257, 1500, 1520
AfiI	CCNNNNNNNGG	6 cut(s)	395, 434, 499, 710, 965, 1468
AflIII	ACRYGT	1 cut(s)	1475
AgsI	TTSAA	5 cut(s)	10, 54, 76, 89, 1242
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	1447
AjuI	GAANNNNNNNTTGG	2 cut(s)	676, 708
AleI	CACNNNNGTG	2 cut(s)	1108, 1406
AloI	GAACNNNNNNTCC	2 cut(s)	1084, 1116
Alw21I	GWGCWC	3 cut(s)	629, 898, 1403
Alw26I	GTCTC	1 cut(s)	803
Alw44I	GTGCAC	2 cut(s)	894, 1399
AlwI	GGATC	4 cut(s)	366, 436, 978, 991
AlwNI	CAGNNNCTG	1 cut(s)	1313
Ama87I	CYCGRG	2 cut(s)	247, 912
AoxI	GGCC	2 cut(s)	490, 1480
ApaLI	GTGCAC	2 cut(s)	894, 1399
ApoI	RAATTY	2 cut(s)	573, 1075
Asp718I	GGTACC	1 cut(s)	398
AspLEI	GCGC	4 cut(s)	19, 131, 482, 923
AspS9I	GGNCC	2 cut(s)	660, 1451
AsuC2I	CCSGG	2 cut(s)	396, 606
AsuII	TTCGAA	1 cut(s)	519
AvaI	CYCGRG	2 cut(s)	247, 912
AvaII	GGWCC	2 cut(s)	660, 1451
BaeGI	GKGCMC	3 cut(s)	898, 1121, 1403
BamHI	GGATCC	1 cut(s)	983
BanI	GGYRCC	9 cut(s)	269, 296, 350, 398, 775, 1116, 1219, 1249, 1303
BbrPI	CACGTG	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	3 cut(s)	629, 898, 1403
BccI	CCATC	5 cut(s)	236, 685, 760, 1049, 1159
BceAI	ACGGC	1 cut(s)	530
BciT130I	CCWGG	1 cut(s)	1449
BclI	TGATCA	2 cut(s)	64, 1363
BcnI	CCSGG	2 cut(s)	396, 606
BcoDI	GTCTC	1 cut(s)	803
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	5 cut(s)	36, 176, 513, 1235, 1277
BfmI	CTRYAG	3 cut(s)	525, 537, 555
BfoI	RGCGCY	1 cut(s)	483
BfuAI	ACCTGC	1 cut(s)	460
BmcAI	AGTACT	1 cut(s)	1500
Bme1390I	CCNGG	3 cut(s)	396, 606, 1449
Bme18I	GGWCC	2 cut(s)	660, 1451
BmeT110I	CYCGRG	2 cut(s)	247, 912
BmgT120I	GGNCC	2 cut(s)	660, 1451
BmrFI	CCNGG	3 cut(s)	396, 606, 1449
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	2 cut(s)	199, 636
Bpu14I	TTCGAA	1 cut(s)	519
BpuEI	CTTGAG	6 cut(s)	259, 693, 813, 1269, 1305, 1479
BpuMI	CCSGG	2 cut(s)	396, 606
BsaAI	YACGTR	1 cut(s)	624
BsaBI	GATNNNNATC	1 cut(s)	988
BsaJI	CCNNGG	5 cut(s)	248, 394, 493, 911, 1018
BsaWI	WCCGGW	1 cut(s)	790
BsaXI	ACNNNNNCTCC	6 cut(s)	329, 359, 802, 832, 1215, 1245
Bsc4I	CCNNNNNNNGG	6 cut(s)	395, 434, 499, 710, 965, 1468
Bse118I	RCCGGY	6 cut(s)	209, 233, 260, 287, 314, 341
Bse1I	ACTGG	4 cut(s)	127, 216, 653, 1253
Bse8I	GATNNNNATC	1 cut(s)	988
BseBI	CCWGG	1 cut(s)	1449
BseDI	CCNNGG	5 cut(s)	248, 394, 493, 911, 1018
BseGI	GGATG	2 cut(s)	243, 1411
BseJI	GATNNNNATC	1 cut(s)	988
BseLI	CCNNNNNNNGG	6 cut(s)	395, 434, 499, 710, 965, 1468
BseMII	CTCAG	1 cut(s)	1059
BseNI	ACTGG	4 cut(s)	127, 216, 653, 1253
BseSI	GKGCMC	3 cut(s)	898, 1121, 1403
BsgI	GTGCAG	1 cut(s)	1299
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	492, 1482
BshNI	GGYRCC	9 cut(s)	269, 296, 350, 398, 775, 1116, 1219, 1249, 1303
BsiHKAI	GWGCWC	3 cut(s)	629, 898, 1403
BsiHKCI	CYCGRG	2 cut(s)	247, 912
BslFI	GGGAC	1 cut(s)	1024
BslI	CCNNNNNNNGG	6 cut(s)	395, 434, 499, 710, 965, 1468
BsmAI	GTCTC	1 cut(s)	803
BsmFI	GGGAC	1 cut(s)	1024
BsnI	GGCC	2 cut(s)	492, 1482
BsoBI	CYCGRG	2 cut(s)	247, 912
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	4 cut(s)	629, 898, 1121, 1403
Bsp143I	GATC	5 cut(s)	64, 371, 441, 983, 1363
BspANI	GGCC	2 cut(s)	492, 1482
BspCNI	CTCAG	1 cut(s)	1058
BspFNI	CGCG	1 cut(s)	131
BspMAI	CTGCAG	3 cut(s)	529, 541, 559
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	4 cut(s)	366, 436, 978, 991
BspT104I	TTCGAA	1 cut(s)	519
BspT107I	GGYRCC	9 cut(s)	269, 296, 350, 398, 775, 1116, 1219, 1249, 1303
BsrBI	CCGCTC	6 cut(s)	405, 458, 671, 902, 929, 956
BsrFI	RCCGGY	6 cut(s)	209, 233, 260, 287, 314, 341
BsrI	ACTGG	4 cut(s)	127, 216, 653, 1253
BssAI	RCCGGY	6 cut(s)	209, 233, 260, 287, 314, 341
BssECI	CCNNGG	5 cut(s)	248, 394, 493, 911, 1018
BssMI	GATC	5 cut(s)	64, 371, 441, 983, 1363
BssT1I	CCWWGG	2 cut(s)	493, 1018
Bst2UI	CCWGG	1 cut(s)	1449
Bst4CI	ACNGT	2 cut(s)	58, 1439
BstBAI	YACGTR	1 cut(s)	624
BstBI	TTCGAA	1 cut(s)	519
BstC8I	GCNNGC	3 cut(s)	478, 487, 919
BstDEI	CTNAG	3 cut(s)	1045, 1086, 1131
BstEII	GGTNACC	2 cut(s)	717, 1191
BstENI	CCTNNNNNAGG	1 cut(s)	963
BstF5I	GGATG	2 cut(s)	243, 1411
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	4 cut(s)	19, 131, 482, 923
BstKTI	GATC	5 cut(s)	67, 374, 444, 986, 1366
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	5 cut(s)	64, 371, 441, 983, 1363
BstNI	CCWGG	1 cut(s)	1449
BstNSI	RCATGY	1 cut(s)	1479
BstPI	GGTNACC	2 cut(s)	717, 1191
BstSCI	CCNGG	3 cut(s)	394, 604, 1447
BstSFI	CTRYAG	3 cut(s)	525, 537, 555
BstSLI	GKGCMC	3 cut(s)	898, 1121, 1403
BstUI	CGCG	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	371, 983
BstXI	CCANNNNNNTGG	1 cut(s)	78
BstYI	RGATCY	2 cut(s)	371, 983
BsuRI	GGCC	2 cut(s)	492, 1482
BtsCI	GGATG	2 cut(s)	243, 1411
BtsIMutI	CAGTG	2 cut(s)	223, 1115
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	478, 487, 919
CaiI	CAGNNNCTG	1 cut(s)	1313
CfoI	GCGC	4 cut(s)	19, 131, 482, 923
Cfr10I	RCCGGY	6 cut(s)	209, 233, 260, 287, 314, 341
Cfr13I	GGNCC	2 cut(s)	660, 1451
CseI	GACGC	1 cut(s)	875
Csp6I	GTAC	5 cut(s)	337, 399, 1256, 1499, 1519
CviAII	CATG	3 cut(s)	1051, 1414, 1476
CviQI	GTAC	5 cut(s)	337, 399, 1256, 1499, 1519
DdeI	CTNAG	3 cut(s)	1045, 1086, 1131
DpnI	GATC	5 cut(s)	66, 373, 443, 985, 1365
DpnII	GATC	5 cut(s)	64, 371, 441, 983, 1363
DraI	TTTAAA	3 cut(s)	579, 768, 1080
EciI	GGCGGA	1 cut(s)	1020
Eco130I	CCWWGG	2 cut(s)	493, 1018
Eco47I	GGWCC	2 cut(s)	660, 1451
Eco72I	CACGTG	1 cut(s)	624
Eco88I	CYCGRG	2 cut(s)	247, 912
Eco91I	GGTNACC	2 cut(s)	717, 1191
EcoNI	CCTNNNNNAGG	1 cut(s)	963
EcoO109I	RGGNCCY	1 cut(s)	660
EcoO65I	GGTNACC	2 cut(s)	717, 1191
EcoRII	CCWGG	1 cut(s)	1447
EcoT14I	CCWWGG	2 cut(s)	493, 1018
ErhI	CCWWGG	2 cut(s)	493, 1018
FaeI	CATG	3 cut(s)	1054, 1417, 1479
FaqI	GGGAC	1 cut(s)	1024
FatI	CATG	3 cut(s)	1050, 1413, 1475
FauI	CCCGC	5 cut(s)	410, 676, 907, 934, 961
FbaI	TGATCA	2 cut(s)	64, 1363
FokI	GGATG	2 cut(s)	230, 1418
FspBI	CTAG	5 cut(s)	36, 176, 513, 1235, 1277
GlaI	GCGC	4 cut(s)	18, 130, 481, 922
GsuI	CTGGAG	2 cut(s)	199, 636
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	2 cut(s)	492, 1482
HgaI	GACGC	1 cut(s)	875
HhaI	GCGC	4 cut(s)	19, 131, 482, 923
Hin1II	CATG	3 cut(s)	1054, 1417, 1479
Hin6I	GCGC	4 cut(s)	17, 129, 480, 921
HinP1I	GCGC	4 cut(s)	17, 129, 480, 921
HinfI	GANTC	2 cut(s)	697, 1171
Hpy166II	GTNNAC	3 cut(s)	339, 896, 1401
Hpy188I	TCNGA	6 cut(s)	64, 241, 738, 1048, 1212, 1368
Hpy188III	TCNNGA	5 cut(s)	139, 247, 830, 1286, 1322
Hpy8I	GTNNAC	3 cut(s)	339, 896, 1401
Hpy99I	CGWCG	1 cut(s)	419
HpyCH4III	ACNGT	2 cut(s)	58, 1439
HpyCH4IV	ACGT	3 cut(s)	163, 623, 1355
HpyF3I	CTNAG	3 cut(s)	1045, 1086, 1131
HpySE526I	ACGT	3 cut(s)	163, 623, 1355
Hsp92II	CATG	3 cut(s)	1054, 1417, 1479
HspAI	GCGC	4 cut(s)	17, 129, 480, 921
KpnI	GGTACC	1 cut(s)	402
Ksp22I	TGATCA	2 cut(s)	64, 1363
Kzo9I	GATC	5 cut(s)	64, 371, 441, 983, 1363
MaeI	CTAG	5 cut(s)	36, 176, 513, 1235, 1277
MaeII	ACGT	3 cut(s)	163, 623, 1355
MaeIII	GTNAC	8 cut(s)	24, 31, 46, 223, 717, 1191, 1203, 1424
MalI	GATC	5 cut(s)	66, 373, 443, 985, 1365
MbiI	CCGCTC	6 cut(s)	405, 458, 671, 902, 929, 956
MboI	GATC	5 cut(s)	64, 371, 441, 983, 1363
MboII	GAAGA	2 cut(s)	101, 1119
MfeI	CAATTG	2 cut(s)	105, 1522
MflI	RGATCY	2 cut(s)	371, 983
MhlI	GDGCHC	4 cut(s)	629, 898, 1121, 1403
MluCI	AATT	5 cut(s)	105, 573, 616, 1075, 1522
MlyI	GAGTC	2 cut(s)	691, 1165
MmeI	TCCRAC	1 cut(s)	264
MseI	TTAA	4 cut(s)	578, 767, 1079, 1531
MslI	CAYNNNNRTG	3 cut(s)	76, 1108, 1406
MspA1I	CMGCKG	3 cut(s)	542, 554, 1431
MspR9I	CCNGG	3 cut(s)	396, 606, 1449
MunI	CAATTG	2 cut(s)	105, 1522
MvaI	CCWGG	1 cut(s)	1449
MvnI	CGCG	1 cut(s)	131
NciI	CCSGG	2 cut(s)	396, 606
NdeII	GATC	5 cut(s)	64, 371, 441, 983, 1363
NlaIII	CATG	3 cut(s)	1054, 1417, 1479
NmuCI	GTSAC	7 cut(s)	31, 46, 223, 717, 1191, 1203, 1424
NspI	RCATGY	1 cut(s)	1479
NspV	TTCGAA	1 cut(s)	519
OliI	CACNNNNGTG	2 cut(s)	1108, 1406
PciI	ACATGT	1 cut(s)	1475
PleI	GAGTC	2 cut(s)	691, 1165
PmaCI	CACGTG	1 cut(s)	624
PmlI	CACGTG	1 cut(s)	624
PpsI	GAGTC	2 cut(s)	691, 1165
Ppu21I	YACGTR	1 cut(s)	624
PpuMI	RGGWCCY	1 cut(s)	660
PscI	ACATGT	1 cut(s)	1475
Psp1406I	AACGTT	1 cut(s)	1355
Psp5II	RGGWCCY	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	1447
PspCI	CACGTG	1 cut(s)	624
PspEI	GGTNACC	2 cut(s)	717, 1191
PspGI	CCWGG	1 cut(s)	1447
PspPI	GGNCC	2 cut(s)	660, 1451
PspPPI	RGGWCCY	1 cut(s)	660
PstI	CTGCAG	3 cut(s)	529, 541, 559
PstNI	CAGNNNCTG	1 cut(s)	1313
PsuI	RGATCY	2 cut(s)	371, 983
PvuII	CAGCTG	2 cut(s)	542, 554
RsaI	GTAC	5 cut(s)	338, 400, 1257, 1500, 1520
RsaNI	GTAC	5 cut(s)	337, 399, 1256, 1499, 1519
RseI	CAYNNNNRTG	3 cut(s)	76, 1108, 1406
SaqAI	TTAA	4 cut(s)	578, 767, 1079, 1531
Sau3AI	GATC	5 cut(s)	64, 371, 441, 983, 1363
Sau96I	GGNCC	2 cut(s)	660, 1451
ScaI	AGTACT	1 cut(s)	1500
SchI	GAGTC	2 cut(s)	691, 1165
ScrFI	CCNGG	3 cut(s)	396, 606, 1449
SduI	GDGCHC	4 cut(s)	629, 898, 1121, 1403
SfcI	CTRYAG	3 cut(s)	525, 537, 555
SfuI	TTCGAA	1 cut(s)	519
SinI	GGWCC	2 cut(s)	660, 1451
SmiMI	CAYNNNNRTG	3 cut(s)	76, 1108, 1406
SmlI	CTYRAG	6 cut(s)	274, 708, 828, 1284, 1320, 1494
SmoI	CTYRAG	6 cut(s)	274, 708, 828, 1284, 1320, 1494
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	5 cut(s)	105, 573, 616, 1075, 1522
SspMI	CTAG	5 cut(s)	36, 176, 513, 1235, 1277
StyD4I	CCNGG	3 cut(s)	394, 604, 1447
StyI	CCWWGG	2 cut(s)	493, 1018
TaaI	ACNGT	2 cut(s)	58, 1439
TaiI	ACGT	3 cut(s)	166, 626, 1358
TaqI	TCGA	5 cut(s)	138, 329, 519, 695, 1169
TasI	AATT	5 cut(s)	105, 573, 616, 1075, 1522
TatI	WGTACW	3 cut(s)	336, 1498, 1518
TauI	GCSGC	3 cut(s)	182, 458, 492
Tru1I	TTAA	4 cut(s)	578, 767, 1079, 1531
Tru9I	TTAA	4 cut(s)	578, 767, 1079, 1531
TscAI	CASTG	2 cut(s)	223, 1115
TseFI	GTSAC	7 cut(s)	31, 46, 223, 717, 1191, 1203, 1424
Tsp45I	GTSAC	7 cut(s)	31, 46, 223, 717, 1191, 1203, 1424
TspDTI	ATGAA	2 cut(s)	609, 1370
TspGWI	ACGGA	2 cut(s)	108, 1418
TspRI	CASTG	2 cut(s)	223, 1115
VneI	GTGCAC	2 cut(s)	894, 1399
VpaK11BI	GGWCC	2 cut(s)	660, 1451
XagI	CCTNNNNNAGG	1 cut(s)	963
XapI	RAATTY	2 cut(s)	573, 1075
XceI	RCATGY	1 cut(s)	1479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1048
XspI	CTAG	5 cut(s)	36, 176, 513, 1235, 1277
ZrmI	AGTACT	1 cut(s)	1500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.