Rh2AG620900

Gibberellin-regulated protein 14-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001842
Physical Location & Seq
Reverse (-)
84459455 .. 84465014
5560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG620900.1

Sequence Viewer

Length: 1383 bp
ATGGCAGGACATGGTGATGATGGTAATGCTAATAAACATCCGCCGCCGCCTCCACCCCAGAAAACGCCATCACCGGCTCCAGTGAAGTCATCGCCACCAGCTCCGGCACCTGGAGCAAATGCACCGGCCCCCCGAGGGAATGCACCGGCTCCAACACCCCGAGCGAATGCACCGGCTCCAACACCACTAGCAAATGCACCGGCTCTGACACCCCGACCAAATGCACCAGCTCTCCCACCCCCACCCCCTGTACCCGCTCCACCCCCGAATAATTCTTCAGGCGAAAACAACTCTTTGTTTGGCTTGATCCTTCTACCTGCTGCTCTCGCTCTCACTGCCGCCGGCGCAGGCGCTGGGGCTGGTGCTGGCTTTAGTGGCGCCGCTGCCATAGCTAGCTTCGAAGCTGCAGCTGCCTCTGCAGCTGCAACAGCAGCTGGAAACATCCTCCAAGAACTTTTAAAACGTAACAAAAATGAAACATCGCCGGGTAAGAATCAGTGCACATGCTCGTCAGGTGGGAAGGAACCTCCTCGGTCTATGACCTCCCCTACTCCACCATCTCCAATCAAACCTTCGACTCCACCAGCTCAAGGAAGGTCACCACCTTCGCCACCTCTAAAAAGGGCACCACCACCTCCCCCACCTTTAAAAAAGGCACCACCACCACCACCACCGGAGGAAGAAGATGGAGAGACACCAGCTCCTTCACCTCAAGATGACAACTTATTGCCTCCATCACCTTTTGTGGACGCACCCTCTCATTCACCTTTACCAAACGCACCTGCTCCTTCACCTCTAGCGAGTGCACCCGCTCCTGTTGGCGGCGCTGGCGGATACAAATCCAAAGCAGGAGCTAGAAGGACCATCCTTGGCGGCGGTATTGGAAAAACCATCTCAGACATGGGTAGCCATGAGACCAGTGAAAATTTAAACACTAAGGTAACAACGCCCCACATGCGTCAGTGCAGGTGCCCTAAATCTCCAGCTATGACCTCCCCCACTCCACCATCTCCAATCAAACCCTCGACTCCACTAGCTCAAGGAAGGTCACCACCTTTGTCACCTCTGAAAAAGGCACCACCATCTCCCCCACCTTCAAAAAAGGCACCACCACCTCCACTAGCTCCAGCACCTCAAGATGACGTTGATGTGGCACTAGCTCCCGCACCTCAAAATGACAAGGCTTCTGTTGCAGATTGCATAACGTTATGTGATCAGAGGTGTGCGCTTCACCAAAATAAGAAAGTGTGCACGGATGTATGTATGATTTGTTGTGACCGCTGCAACTGTGTTCCACCCGGACCTTCTGGCCGCAACAAGGAAACATGCGGCCCCTGCTACACTCAAATACTCATCCAAGAATACAAGTACAATTGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

460

Amino Acids

46.23

Weight (kDa)

9.08

Isoelectric Point (pI)

85.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 399 - 460 6e-15 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 790, 957
Acc36I ACCTGC 3 cut(s) 325, 790, 957
AccB1I GGYRCC 7 cut(s) 106, 377, 625, 655, 969, 1075, 1105
AccBSI CCGCTC 2 cut(s) 257, 812
AclI AACGTT 1 cut(s) 1205
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 1309
AcsI RAATTY 1 cut(s) 925
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 2 cut(s) 252, 1370
AfiI CCNNNNNNNGG 5 cut(s) 110, 135, 590, 821, 1318
AgsI TTSAA 1 cut(s) 1098
AjnI CCWGG 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 556, 588
Alw21I GWGCWC 3 cut(s) 503, 808, 1253
Alw26I GTCTC 2 cut(s) 686, 908
Alw44I GTGCAC 3 cut(s) 499, 804, 1249
AlwI GGATC 1 cut(s) 301
AlwNI CAGNNNCTG 2 cut(s) 353, 434
Ama87I CYCGRG 2 cut(s) 132, 159
AoxI GGCC 3 cut(s) 126, 1309, 1330
ApaLI GTGCAC 3 cut(s) 499, 804, 1249
ApeKI GCWGC 9 cut(s) 320, 383, 404, 407, 410, 419, 422, 431, 1281
ApoI RAATTY 1 cut(s) 925
AspLEI GCGC 5 cut(s) 347, 353, 380, 827, 1228
AspS9I GGNCC 4 cut(s) 127, 861, 1301, 1331
AsuC2I CCSGG 2 cut(s) 486, 1299
AsuII TTCGAA 1 cut(s) 399
AsuNHI GCTAGC 1 cut(s) 392
AvaI CYCGRG 2 cut(s) 132, 159
AvaII GGWCC 2 cut(s) 861, 1301
BaeGI GKGCMC 5 cut(s) 503, 628, 808, 974, 1253
BanI GGYRCC 7 cut(s) 106, 377, 625, 655, 969, 1075, 1105
Bbv12I GWGCWC 3 cut(s) 503, 808, 1253
BbvI GCAGC 9 cut(s) 307, 370, 391, 397, 409, 419, 431, 443, 1268
BccI CCATC 9 cut(s) 14, 76, 565, 680, 742, 872, 899, 1015, 1090
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 1 cut(s) 827
BclI TGATCA 1 cut(s) 1213
BcnI CCSGG 2 cut(s) 486, 1299
BcoDI GTCTC 2 cut(s) 686, 908
BfaI CTAG 7 cut(s) 188, 393, 797, 855, 1034, 1121, 1157
BfmI CTRYAG 2 cut(s) 405, 417
BfoI RGCGCY 3 cut(s) 354, 381, 828
BfuAI ACCTGC 3 cut(s) 325, 790, 957
BfuI GTATCC 1 cut(s) 827
Bme1390I CCNGG 3 cut(s) 111, 486, 1299
Bme18I GGWCC 2 cut(s) 861, 1301
BmeT110I CYCGRG 2 cut(s) 132, 159
BmgT120I GGNCC 4 cut(s) 127, 861, 1301, 1331
BmrFI CCNGG 3 cut(s) 111, 486, 1299
BmtI GCTAGC 1 cut(s) 396
BpmI CTGGAG 4 cut(s) 63, 132, 966, 1110
Bpu14I TTCGAA 1 cut(s) 399
BpuEI CTTGAG 4 cut(s) 573, 696, 1023, 1119
BpuMI CCSGG 2 cut(s) 486, 1299
BsaBI GATNNNNATC 1 cut(s) 838
BsaHI GRCGYC 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 3 cut(s) 133, 530, 868
BsaWI WCCGGW 1 cut(s) 673
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 685, 715
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 135, 590, 821, 1318
Bse118I RCCGGY 6 cut(s) 73, 124, 145, 172, 199, 341
Bse1I ACTGG 2 cut(s) 80, 918
Bse8I GATNNNNATC 1 cut(s) 838
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 133, 530, 868
BseGI GGATG 5 cut(s) 37, 441, 864, 1261, 1353
BseJI GATNNNNATC 1 cut(s) 838
BseLI CCNNNNNNNGG 5 cut(s) 110, 135, 590, 821, 1318
BseMII CTCAG 1 cut(s) 909
BseNI ACTGG 2 cut(s) 80, 918
BseRI GAGGAG 1 cut(s) 519
BseSI GKGCMC 5 cut(s) 503, 628, 808, 974, 1253
BseXI GCAGC 9 cut(s) 307, 370, 391, 397, 409, 419, 431, 443, 1268
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 985
BshFI GGCC 3 cut(s) 128, 1311, 1332
BshNI GGYRCC 7 cut(s) 106, 377, 625, 655, 969, 1075, 1105
BsiHKAI GWGCWC 3 cut(s) 503, 808, 1253
BsiHKCI CYCGRG 2 cut(s) 132, 159
BslI CCNNNNNNNGG 5 cut(s) 110, 135, 590, 821, 1318
BsmAI GTCTC 2 cut(s) 686, 908
BsmI GAATGC 2 cut(s) 145, 172
BsnI GGCC 3 cut(s) 128, 1311, 1332
Bso31I GGTCTC 1 cut(s) 908
BsoBI CYCGRG 2 cut(s) 132, 159
Bsp119I TTCGAA 1 cut(s) 399
Bsp1286I GDGCHC 5 cut(s) 503, 628, 808, 974, 1253
Bsp143I GATC 2 cut(s) 306, 1213
BspANI GGCC 3 cut(s) 128, 1311, 1332
BspCNI CTCAG 1 cut(s) 908
BspMAI CTGCAG 2 cut(s) 409, 421
BspMI ACCTGC 3 cut(s) 325, 790, 957
BspOI GCTAGC 1 cut(s) 396
BspPI GGATC 1 cut(s) 301
BspT104I TTCGAA 1 cut(s) 399
BspT107I GGYRCC 7 cut(s) 106, 377, 625, 655, 969, 1075, 1105
BspTNI GGTCTC 1 cut(s) 908
BsrBI CCGCTC 2 cut(s) 257, 812
BsrFI RCCGGY 6 cut(s) 73, 124, 145, 172, 199, 341
BsrI ACTGG 2 cut(s) 80, 918
BssAI RCCGGY 6 cut(s) 73, 124, 145, 172, 199, 341
BssECI CCNNGG 3 cut(s) 133, 530, 868
BssMI GATC 2 cut(s) 306, 1213
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 868
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 1289
BstACI GRCGYC 1 cut(s) 378
BstBI TTCGAA 1 cut(s) 399
BstC8I GCNNGC 5 cut(s) 343, 349, 367, 394, 829
BstDEI CTNAG 2 cut(s) 895, 936
BstEII GGTNACC 2 cut(s) 597, 1047
BstF5I GGATG 5 cut(s) 37, 441, 864, 1261, 1353
BstH2I RGCGCY 3 cut(s) 354, 381, 828
BstHHI GCGC 5 cut(s) 347, 353, 380, 827, 1228
BstKTI GATC 2 cut(s) 309, 1216
BstMAI GTCTC 2 cut(s) 686, 908
BstMBI GATC 2 cut(s) 306, 1213
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 3 cut(s) 507, 958, 1329
BstPI GGTNACC 2 cut(s) 597, 1047
BstSCI CCNGG 3 cut(s) 109, 484, 1297
BstSFI CTRYAG 2 cut(s) 405, 417
BstSLI GKGCMC 5 cut(s) 503, 628, 808, 974, 1253
BstV1I GCAGC 9 cut(s) 307, 370, 391, 397, 409, 419, 431, 443, 1268
BsuI GTATCC 1 cut(s) 827
BsuRI GGCC 3 cut(s) 128, 1311, 1332
BtgZI GCGATG 2 cut(s) 75, 465
BtsCI GGATG 5 cut(s) 37, 441, 864, 1261, 1353
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 5 cut(s) 87, 333, 503, 925, 968
BveI ACCTGC 3 cut(s) 325, 790, 957
Cac8I GCNNGC 5 cut(s) 343, 349, 367, 394, 829
CaiI CAGNNNCTG 2 cut(s) 353, 434
CfoI GCGC 5 cut(s) 347, 353, 380, 827, 1228
Cfr10I RCCGGY 6 cut(s) 73, 124, 145, 172, 199, 341
Cfr13I GGNCC 4 cut(s) 127, 861, 1301, 1331
CseI GACGC 2 cut(s) 758, 947
Csp6I GTAC 2 cut(s) 251, 1369
CviAII CATG 6 cut(s) 11, 504, 901, 911, 955, 1326
CviQI GTAC 2 cut(s) 251, 1369
DdeI CTNAG 2 cut(s) 895, 936
DinI GGCGCC 1 cut(s) 379
DpnI GATC 2 cut(s) 308, 1215
DpnII GATC 2 cut(s) 306, 1213
DraI TTTAAA 3 cut(s) 459, 648, 930
EaeI YGGCCR 1 cut(s) 1309
EciI GGCGGA 2 cut(s) 30, 846
Eco130I CCWWGG 1 cut(s) 868
Eco31I GGTCTC 1 cut(s) 908
Eco47I GGWCC 2 cut(s) 861, 1301
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 2 cut(s) 132, 159
Eco91I GGTNACC 2 cut(s) 597, 1047
EcoO65I GGTNACC 2 cut(s) 597, 1047
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 868
EgeI GGCGCC 1 cut(s) 379
EheI GGCGCC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 868
FaeI CATG 6 cut(s) 14, 507, 904, 914, 958, 1329
FatI CATG 6 cut(s) 10, 503, 900, 910, 954, 1325
FauI CCCGC 3 cut(s) 262, 817, 1171
FbaI TGATCA 1 cut(s) 1213
FokI GGATG 5 cut(s) 24, 428, 851, 1268, 1340
FspBI CTAG 7 cut(s) 188, 393, 797, 855, 1034, 1121, 1157
GlaI GCGC 5 cut(s) 346, 352, 379, 826, 1227
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 4 cut(s) 63, 132, 966, 1110
HaeII RGCGCY 3 cut(s) 354, 381, 828
HaeIII GGCC 3 cut(s) 128, 1311, 1332
HgaI GACGC 2 cut(s) 758, 947
HhaI GCGC 5 cut(s) 347, 353, 380, 827, 1228
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 6 cut(s) 14, 507, 904, 914, 958, 1329
Hin6I GCGC 5 cut(s) 345, 351, 378, 825, 1226
HinP1I GCGC 5 cut(s) 345, 351, 378, 825, 1226
HinfI GANTC 3 cut(s) 493, 577, 1027
Hpy166II GTNNAC 4 cut(s) 501, 748, 806, 1251
Hpy188I TCNGA 4 cut(s) 207, 898, 1068, 1218
Hpy188III TCNNGA 2 cut(s) 713, 1136
Hpy8I GTNNAC 4 cut(s) 501, 748, 806, 1251
HpyCH4III ACNGT 1 cut(s) 1289
HpyCH4IV ACGT 3 cut(s) 463, 1143, 1205
HpyF3I CTNAG 2 cut(s) 895, 936
HpySE526I ACGT 3 cut(s) 463, 1143, 1205
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 6 cut(s) 14, 507, 904, 914, 958, 1329
HspAI GCGC 5 cut(s) 345, 351, 378, 825, 1226
KasI GGCGCC 1 cut(s) 377
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 1213
Kzo9I GATC 2 cut(s) 306, 1213
Lsp1109I GCAGC 9 cut(s) 307, 370, 391, 397, 409, 419, 431, 443, 1268
MaeI CTAG 7 cut(s) 188, 393, 797, 855, 1034, 1121, 1157
MaeII ACGT 3 cut(s) 463, 1143, 1205
MaeIII GTNAC 6 cut(s) 464, 597, 940, 1047, 1059, 1274
MalI GATC 2 cut(s) 308, 1215
MbiI CCGCTC 2 cut(s) 257, 812
MboI GATC 2 cut(s) 306, 1213
MboII GAAGA 3 cut(s) 267, 692, 695
MfeI CAATTG 1 cut(s) 1372
MhlI GDGCHC 5 cut(s) 503, 628, 808, 974, 1253
MluCI AATT 3 cut(s) 271, 925, 1372
Mly113I GGCGCC 1 cut(s) 378
MlyI GAGTC 2 cut(s) 571, 1021
MmeI TCCRAC 2 cut(s) 176, 203
MreI CGCCGGCG 1 cut(s) 341
MroNI GCCGGC 1 cut(s) 341
MseI TTAA 3 cut(s) 458, 647, 929
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 5 cut(s) 383, 410, 422, 434, 1281
MspR9I CCNGG 3 cut(s) 111, 486, 1299
MunI CAATTG 1 cut(s) 1372
Mva1269I GAATGC 2 cut(s) 145, 172
MvaI CCWGG 1 cut(s) 111
NaeI GCCGGC 1 cut(s) 343
NarI GGCGCC 1 cut(s) 378
NciI CCSGG 2 cut(s) 486, 1299
NdeII GATC 2 cut(s) 306, 1213
NgoMIV GCCGGC 1 cut(s) 341
NheI GCTAGC 1 cut(s) 392
NlaIII CATG 6 cut(s) 14, 507, 904, 914, 958, 1329
NmuCI GTSAC 4 cut(s) 597, 1047, 1059, 1274
NspI RCATGY 3 cut(s) 507, 958, 1329
NspV TTCGAA 1 cut(s) 399
PaqCI CACCTGC 2 cut(s) 790, 957
PctI GAATGC 2 cut(s) 145, 172
PdiI GCCGGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 493
PleI GAGTC 2 cut(s) 571, 1021
PluTI GGCGCC 1 cut(s) 381
PpsI GAGTC 2 cut(s) 571, 1021
Psp1406I AACGTT 1 cut(s) 1205
Psp6I CCWGG 1 cut(s) 109
PspEI GGTNACC 2 cut(s) 597, 1047
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 1 cut(s) 109
PspPI GGNCC 4 cut(s) 127, 861, 1301, 1331
PstI CTGCAG 2 cut(s) 409, 421
PstNI CAGNNNCTG 2 cut(s) 353, 434
PvuII CAGCTG 3 cut(s) 410, 422, 434
RsaI GTAC 2 cut(s) 252, 1370
RsaNI GTAC 2 cut(s) 251, 1369
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 3 cut(s) 458, 647, 929
Sau3AI GATC 2 cut(s) 306, 1213
Sau96I GGNCC 4 cut(s) 127, 861, 1301, 1331
SchI GAGTC 2 cut(s) 571, 1021
ScrFI CCNGG 3 cut(s) 111, 486, 1299
SduI GDGCHC 5 cut(s) 503, 628, 808, 974, 1253
SfcI CTRYAG 2 cut(s) 405, 417
SfoI GGCGCC 1 cut(s) 379
SfuI TTCGAA 1 cut(s) 399
SgrAI CRCCGGYG 1 cut(s) 341
SinI GGWCC 2 cut(s) 861, 1301
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 4 cut(s) 588, 711, 1038, 1134
SmoI CTYRAG 4 cut(s) 588, 711, 1038, 1134
Sse9I AATT 3 cut(s) 271, 925, 1372
SspDI GGCGCC 1 cut(s) 377
SspMI CTAG 7 cut(s) 188, 393, 797, 855, 1034, 1121, 1157
StyD4I CCNGG 3 cut(s) 109, 484, 1297
StyI CCWWGG 1 cut(s) 868
TaaI ACNGT 1 cut(s) 1289
TaiI ACGT 3 cut(s) 466, 1146, 1208
TaqI TCGA 3 cut(s) 399, 575, 1025
TaqII GACCGA 1 cut(s) 522
TasI AATT 3 cut(s) 271, 925, 1372
TatI WGTACW 1 cut(s) 1368
TauI GCSGC 8 cut(s) 46, 49, 341, 383, 825, 876, 1314, 1332
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 3 cut(s) 458, 647, 929
Tru9I TTAA 3 cut(s) 458, 647, 929
TscAI CASTG 5 cut(s) 87, 340, 503, 925, 968
TseFI GTSAC 4 cut(s) 597, 1047, 1059, 1274
TseI GCWGC 9 cut(s) 320, 383, 404, 407, 410, 419, 422, 431, 1281
Tsp45I GTSAC 4 cut(s) 597, 1047, 1059, 1274
TspDTI ATGAA 1 cut(s) 489
TspGWI ACGGA 1 cut(s) 1268
TspRI CASTG 5 cut(s) 87, 340, 503, 925, 968
VneI GTGCAC 3 cut(s) 499, 804, 1249
VpaK11BI GGWCC 2 cut(s) 861, 1301
XapI RAATTY 1 cut(s) 925
XceI RCATGY 3 cut(s) 507, 958, 1329
XcmI CCANNNNNNNNNTGG 1 cut(s) 898
XspI CTAG 7 cut(s) 188, 393, 797, 855, 1034, 1121, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.