Rw2G051480

Gibberellin-regulated protein 14-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001842
Physical Location & Seq
Reverse (-)
79173193 .. 79176653
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051480.1

Sequence Viewer

Length: 1446 bp
ATGAGTGGACCTATCTCTATGTACCACCGTGGGTACTACCACATCTTCTTAATATGTCAGTCAAATAAACCTAGGAATCCGCCACCTCCACCCCAGAAAACACCGCCACCGGCTCCAGTGAAGTCACCATCACCGGCTCCGACATCCCGAGGAAATGCACCGGCTCCGGCACCTCAAGCAAATGCACCGGCTCCGGCACCCCAAGCAAATGCACCGGCTCCCCCACCTCGAAGGAGTACACCGGCTCCGGCACCCAGAGCAAATGCACCAGATCCCCCACCCCCACCCCCGCCACCTTCAAAACAGAATAATTCTTCAGACGACAACAACCCTTTGTTTGGCTTGATCCTTCTACCTGCCGCTCTCGCTGCCTCTGCTGCTGGCGCTGCCGGCGGCCTTGGTGGCGCTATCATATCTAGCTTCGAAGCTGCAGCTACCTCTGCAGCTGCAACGGCAGCTGCAAATGTGCTCCAAGAAATTTTAAAACATAAGAAAAATGAAACACCTCCCGGTAAGCGTAATTGCACGTGCTCGTCAGGTGGGAAGGAACCTTCTCCAGTTAGGATCTCCCCCGCTCCACCATCTCCAATCAAACCTTCGACTCCACCAACTCAAGGAAGGTCACCACCTTCGCCACCTCTGAAAAGGACACCACCATCTCCGCCACCTTTAAAAAAGGCACCACCACCTCCACCACCACCACCGGAGGAAGTAGAGGGAGAGACACCAACTCCCTCACCTCAAGATGACAACTTATTGGCTCCATCCCCTTTTATAAACGCACCCTTTCCTCCACCTCTGGCAAGTGCTCCCTCTCCTTCACCTCTGGCAAGCGCACCCGCTCCTTCACCTCTGGCAAATGCACCTGCTCCTATTGGAGGCGGTGGCGGTGGTGGATCCAAATCCAAAGCAGGAGGCGGAGGGACTATCCTTGGCGGTAATATTGGAAAAACCATCTCAGACATGGGCAGTCATAAGACCCGTGAAAATTTAAACACTAAGGGAATGCCTTATCCACATCAGTGCAGGTGCCCAAAATCTTCTAAGACCTCCCCCACTCCACCATCTCCAATCAAACCCTCGACTCCACCAGCTCAAAGAAGGTCACCACCTTCGTCACCTCTGAAAAAGGCACCACCACCTCTCCTAGCTTCAAAAAAGGCACCAGCACCACCACCTCCACCAGCTCCAGCACCTCAAGATGACGATGATGTGGCACCAGCTCCTGCACCTCAAGATGACAACACTCCTGTTGCAGATTGCATAACGTTATGTGATCAGAGGTGTGCGTTTCATCAAAATAAGAAAGTGTGCACGGATGTGTGCATGATTTGTTGTGACCGCTGCAATTGTGTTCCACCTGGACCTTCTAACCGCAACAAGGAAACATGTGGCCTCTGCTACACTCAAGTACTTATCCAAGAATACAAGTACAATTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

481

Amino Acids

49.0

Weight (kDa)

9.33

Isoelectric Point (pI)

98.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 420 - 481 4.2e-13 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 776
AarI CACCTGC 2 cut(s) 874, 1017
Acc36I ACCTGC 3 cut(s) 364, 874, 1017
AccB1I GGYRCC 8 cut(s) 169, 196, 250, 679, 1029, 1132, 1162, 1216
AccBSI CCGCTC 3 cut(s) 362, 575, 842
AclI AACGTT 1 cut(s) 1268
AclWI GGATC 5 cut(s) 266, 340, 572, 891, 904
AcsI RAATTY 2 cut(s) 477, 988
AcuI CTGAAG 1 cut(s) 300
AcvI CACGTG 1 cut(s) 528
AfaI GTAC 5 cut(s) 23, 35, 238, 1413, 1433
AfiI CCNNNNNNNGG 4 cut(s) 338, 614, 878, 1381
AflIII ACRYGT 1 cut(s) 1388
AgsI TTSAA 2 cut(s) 300, 1155
AjnI CCWGG 1 cut(s) 1360
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
AleI CACNNNNGTG 2 cut(s) 1021, 1319
AluBI AGCT 9 cut(s) 420, 428, 434, 446, 458, 1094, 1151, 1187, 1223
AluI AGCT 9 cut(s) 420, 428, 434, 446, 458, 1094, 1151, 1187, 1223
Alw21I GWGCWC 4 cut(s) 471, 533, 811, 1316
Alw26I GTCTC 1 cut(s) 716
Alw44I GTGCAC 1 cut(s) 1312
AlwI GGATC 5 cut(s) 266, 340, 572, 891, 904
AlwNI CAGNNNCTG 1 cut(s) 1226
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 2 cut(s) 394, 1393
ApaLI GTGCAC 1 cut(s) 1312
ApoI RAATTY 2 cut(s) 477, 988
AspA2I CCTAGG 1 cut(s) 71
AspLEI GCGC 3 cut(s) 386, 407, 836
AspS9I GGNCC 2 cut(s) 8, 1364
AsuC2I CCSGG 1 cut(s) 510
AsuHPI GGTGA 8 cut(s) 117, 123, 615, 729, 813, 840, 1098, 1110
AsuII TTCGAA 1 cut(s) 423
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 2 cut(s) 8, 1364
AvrII CCTAGG 1 cut(s) 71
BaeGI GKGCMC 2 cut(s) 1034, 1316
BamHI GGATCC 1 cut(s) 896
BanI GGYRCC 8 cut(s) 169, 196, 250, 679, 1029, 1132, 1162, 1216
BbrPI CACGTG 1 cut(s) 528
Bbv12I GWGCWC 4 cut(s) 471, 533, 811, 1316
BccI CCATC 6 cut(s) 136, 589, 664, 772, 962, 1072
BceAI ACGGC 1 cut(s) 468
BciT130I CCWGG 1 cut(s) 1362
BclI TGATCA 1 cut(s) 1276
BcnI CCSGG 1 cut(s) 510
BcoDI GTCTC 1 cut(s) 716
BfaI CTAG 3 cut(s) 72, 417, 1148
BfmI CTRYAG 2 cut(s) 429, 441
BfoI RGCGCY 2 cut(s) 387, 408
BfuAI ACCTGC 3 cut(s) 364, 874, 1017
BglI GCCNNNNNGGC 1 cut(s) 402
BlnI CCTAGG 1 cut(s) 71
BmcAI AGTACT 1 cut(s) 1413
Bme1390I CCNGG 2 cut(s) 510, 1362
Bme18I GGWCC 2 cut(s) 8, 1364
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 8, 1364
BmrFI CCNGG 2 cut(s) 510, 1362
BpmI CTGGAG 3 cut(s) 99, 540, 1173
Bpu14I TTCGAA 1 cut(s) 423
BpuEI CTTGAG 6 cut(s) 159, 597, 726, 1182, 1218, 1392
BpuMI CCSGG 1 cut(s) 510
BsaAI YACGTR 1 cut(s) 528
BsaBI GATNNNNATC 1 cut(s) 901
BsaJI CCNNGG 5 cut(s) 28, 71, 148, 397, 931
BsaWI WCCGGW 1 cut(s) 703
BsaXI ACNNNNNCTCC 6 cut(s) 229, 259, 715, 745, 1128, 1158
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 614, 878, 1381
Bse118I RCCGGY 7 cut(s) 109, 133, 160, 187, 214, 241, 389
Bse1I ACTGG 2 cut(s) 116, 557
Bse8I GATNNNNATC 1 cut(s) 901
BseBI CCWGG 1 cut(s) 1362
BseDI CCNNGG 5 cut(s) 28, 71, 148, 397, 931
BseGI GGATG 3 cut(s) 143, 764, 1324
BseJI GATNNNNATC 1 cut(s) 901
BseLI CCNNNNNNNGG 4 cut(s) 338, 614, 878, 1381
BseMII CTCAG 1 cut(s) 972
BseNI ACTGG 2 cut(s) 116, 557
BseSI GKGCMC 2 cut(s) 1034, 1316
BsgI GTGCAG 2 cut(s) 1045, 1212
BshFI GGCC 2 cut(s) 396, 1395
BshNI GGYRCC 8 cut(s) 169, 196, 250, 679, 1029, 1132, 1162, 1216
BsiHKAI GWGCWC 4 cut(s) 471, 533, 811, 1316
BsiHKCI CYCGRG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 937
BslI CCNNNNNNNGG 4 cut(s) 338, 614, 878, 1381
BsmAI GTCTC 1 cut(s) 716
BsmFI GGGAC 1 cut(s) 937
BsmI GAATGC 1 cut(s) 1011
BsnI GGCC 2 cut(s) 396, 1395
BsoBI CYCGRG 1 cut(s) 147
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 5 cut(s) 471, 533, 811, 1034, 1316
Bsp143I GATC 5 cut(s) 271, 345, 564, 896, 1276
BspANI GGCC 2 cut(s) 396, 1395
BspCNI CTCAG 1 cut(s) 971
BspMAI CTGCAG 2 cut(s) 433, 445
BspMI ACCTGC 3 cut(s) 364, 874, 1017
BspPI GGATC 5 cut(s) 266, 340, 572, 891, 904
BspT104I TTCGAA 1 cut(s) 423
BspT107I GGYRCC 8 cut(s) 169, 196, 250, 679, 1029, 1132, 1162, 1216
BsrBI CCGCTC 3 cut(s) 362, 575, 842
BsrFI RCCGGY 7 cut(s) 109, 133, 160, 187, 214, 241, 389
BsrI ACTGG 2 cut(s) 116, 557
BssAI RCCGGY 7 cut(s) 109, 133, 160, 187, 214, 241, 389
BssECI CCNNGG 5 cut(s) 28, 71, 148, 397, 931
BssMI GATC 5 cut(s) 271, 345, 564, 896, 1276
BssT1I CCWWGG 3 cut(s) 71, 397, 931
Bst2UI CCWGG 1 cut(s) 1362
Bst4CI ACNGT 1 cut(s) 29
BstBAI YACGTR 1 cut(s) 528
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 382, 391, 832
BstDEI CTNAG 3 cut(s) 958, 999, 1044
BstDSI CCRYGG 1 cut(s) 28
BstEII GGTNACC 2 cut(s) 621, 1104
BstENI CCTNNNNNAGG 1 cut(s) 876
BstF5I GGATG 3 cut(s) 143, 764, 1324
BstH2I RGCGCY 2 cut(s) 387, 408
BstHHI GCGC 3 cut(s) 386, 407, 836
BstKTI GATC 5 cut(s) 274, 348, 567, 899, 1279
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 5 cut(s) 271, 345, 564, 896, 1276
BstNI CCWGG 1 cut(s) 1362
BstNSI RCATGY 1 cut(s) 1392
BstPI GGTNACC 2 cut(s) 621, 1104
BstSCI CCNGG 2 cut(s) 508, 1360
BstSFI CTRYAG 2 cut(s) 429, 441
BstSLI GKGCMC 2 cut(s) 1034, 1316
BstX2I RGATCY 3 cut(s) 271, 564, 896
BstYI RGATCY 3 cut(s) 271, 564, 896
BsuRI GGCC 2 cut(s) 396, 1395
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 3 cut(s) 143, 764, 1324
BtsIMutI CAGTG 2 cut(s) 123, 1028
BveI ACCTGC 3 cut(s) 364, 874, 1017
Cac8I GCNNGC 3 cut(s) 382, 391, 832
CaiI CAGNNNCTG 1 cut(s) 1226
CfoI GCGC 3 cut(s) 386, 407, 836
Cfr10I RCCGGY 7 cut(s) 109, 133, 160, 187, 214, 241, 389
Cfr13I GGNCC 2 cut(s) 8, 1364
Csp6I GTAC 5 cut(s) 22, 34, 237, 1412, 1432
CviAII CATG 3 cut(s) 964, 1327, 1389
CviQI GTAC 5 cut(s) 22, 34, 237, 1412, 1432
DdeI CTNAG 3 cut(s) 958, 999, 1044
DpnI GATC 5 cut(s) 273, 347, 566, 898, 1278
DpnII GATC 5 cut(s) 271, 345, 564, 896, 1276
DraI TTTAAA 3 cut(s) 483, 672, 993
EciI GGCGGA 3 cut(s) 69, 651, 933
Eco130I CCWWGG 3 cut(s) 71, 397, 931
Eco47I GGWCC 2 cut(s) 8, 1364
Eco57I CTGAAG 1 cut(s) 300
Eco72I CACGTG 1 cut(s) 528
Eco88I CYCGRG 1 cut(s) 147
Eco91I GGTNACC 2 cut(s) 621, 1104
EcoNI CCTNNNNNAGG 1 cut(s) 876
EcoO65I GGTNACC 2 cut(s) 621, 1104
EcoRII CCWGG 1 cut(s) 1360
EcoT14I CCWWGG 3 cut(s) 71, 397, 931
ErhI CCWWGG 3 cut(s) 71, 397, 931
FaeI CATG 3 cut(s) 967, 1330, 1392
FaqI GGGAC 1 cut(s) 937
FatI CATG 3 cut(s) 963, 1326, 1388
FauI CCCGC 3 cut(s) 297, 580, 847
FbaI TGATCA 1 cut(s) 1276
FokI GGATG 3 cut(s) 130, 751, 1331
FspBI CTAG 3 cut(s) 72, 417, 1148
GlaI GCGC 3 cut(s) 385, 406, 835
GsuI CTGGAG 3 cut(s) 99, 540, 1173
HaeII RGCGCY 2 cut(s) 387, 408
HaeIII GGCC 2 cut(s) 396, 1395
HhaI GCGC 3 cut(s) 386, 407, 836
Hin1II CATG 3 cut(s) 967, 1330, 1392
Hin6I GCGC 3 cut(s) 384, 405, 834
HinP1I GCGC 3 cut(s) 384, 405, 834
HinfI GANTC 3 cut(s) 76, 601, 1084
HphI GGTGA 8 cut(s) 117, 123, 615, 729, 813, 840, 1098, 1110
Hpy166II GTNNAC 3 cut(s) 8, 239, 1314
Hpy188I TCNGA 6 cut(s) 141, 319, 642, 961, 1125, 1281
Hpy188III TCNNGA 4 cut(s) 147, 743, 1199, 1235
Hpy8I GTNNAC 3 cut(s) 8, 239, 1314
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 527, 1268
HpyF3I CTNAG 3 cut(s) 958, 999, 1044
HpySE526I ACGT 2 cut(s) 527, 1268
Hsp92II CATG 3 cut(s) 967, 1330, 1392
HspAI GCGC 3 cut(s) 384, 405, 834
KroI GCCGGC 1 cut(s) 389
KroNI GCCGGC 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 1276
Kzo9I GATC 5 cut(s) 271, 345, 564, 896, 1276
MaeI CTAG 3 cut(s) 72, 417, 1148
MaeII ACGT 2 cut(s) 527, 1268
MaeIII GTNAC 5 cut(s) 123, 621, 1104, 1116, 1337
MalI GATC 5 cut(s) 273, 347, 566, 898, 1278
MbiI CCGCTC 3 cut(s) 362, 575, 842
MboI GATC 5 cut(s) 271, 345, 564, 896, 1276
MboII GAAGA 3 cut(s) 37, 306, 1032
MfeI CAATTG 2 cut(s) 1348, 1435
MflI RGATCY 3 cut(s) 271, 564, 896
MhlI GDGCHC 5 cut(s) 471, 533, 811, 1034, 1316
MluCI AATT 6 cut(s) 310, 477, 520, 988, 1348, 1435
MlyI GAGTC 2 cut(s) 595, 1078
MmeI TCCRAC 1 cut(s) 164
MroNI GCCGGC 1 cut(s) 389
MseI TTAA 5 cut(s) 50, 482, 671, 992, 1444
MslI CAYNNNNRTG 2 cut(s) 1021, 1319
MspA1I CMGCKG 3 cut(s) 446, 458, 1344
MspR9I CCNGG 2 cut(s) 510, 1362
MunI CAATTG 2 cut(s) 1348, 1435
Mva1269I GAATGC 1 cut(s) 1011
MvaI CCWGG 1 cut(s) 1362
NaeI GCCGGC 1 cut(s) 391
NciI CCSGG 1 cut(s) 510
NdeII GATC 5 cut(s) 271, 345, 564, 896, 1276
NgoMIV GCCGGC 1 cut(s) 389
NlaIII CATG 3 cut(s) 967, 1330, 1392
NmuCI GTSAC 5 cut(s) 123, 621, 1104, 1116, 1337
NspI RCATGY 1 cut(s) 1392
NspV TTCGAA 1 cut(s) 423
OliI CACNNNNGTG 2 cut(s) 1021, 1319
PaqCI CACCTGC 2 cut(s) 874, 1017
PciI ACATGT 1 cut(s) 1388
PctI GAATGC 1 cut(s) 1011
PdiI GCCGGC 1 cut(s) 391
PfeI GAWTC 1 cut(s) 76
PleI GAGTC 2 cut(s) 595, 1078
PmaCI CACGTG 1 cut(s) 528
PmlI CACGTG 1 cut(s) 528
PpsI GAGTC 2 cut(s) 595, 1078
Ppu21I YACGTR 1 cut(s) 528
PscI ACATGT 1 cut(s) 1388
PsiI TTATAA 1 cut(s) 776
Psp1406I AACGTT 1 cut(s) 1268
Psp6I CCWGG 1 cut(s) 1360
PspCI CACGTG 1 cut(s) 528
PspEI GGTNACC 2 cut(s) 621, 1104
PspGI CCWGG 1 cut(s) 1360
PspPI GGNCC 2 cut(s) 8, 1364
PstI CTGCAG 2 cut(s) 433, 445
PstNI CAGNNNCTG 1 cut(s) 1226
PsuI RGATCY 3 cut(s) 271, 564, 896
PvuII CAGCTG 2 cut(s) 446, 458
RsaI GTAC 5 cut(s) 23, 35, 238, 1413, 1433
RsaNI GTAC 5 cut(s) 22, 34, 237, 1412, 1432
RseI CAYNNNNRTG 2 cut(s) 1021, 1319
SaqAI TTAA 5 cut(s) 50, 482, 671, 992, 1444
Sau3AI GATC 5 cut(s) 271, 345, 564, 896, 1276
Sau96I GGNCC 2 cut(s) 8, 1364
ScaI AGTACT 1 cut(s) 1413
SchI GAGTC 2 cut(s) 595, 1078
ScrFI CCNGG 2 cut(s) 510, 1362
SduI GDGCHC 5 cut(s) 471, 533, 811, 1034, 1316
SfcI CTRYAG 2 cut(s) 429, 441
SfuI TTCGAA 1 cut(s) 423
SinI GGWCC 2 cut(s) 8, 1364
SmiMI CAYNNNNRTG 2 cut(s) 1021, 1319
SmlI CTYRAG 6 cut(s) 174, 612, 741, 1197, 1233, 1407
SmoI CTYRAG 6 cut(s) 174, 612, 741, 1197, 1233, 1407
Sse9I AATT 6 cut(s) 310, 477, 520, 988, 1348, 1435
SspI AATATT 1 cut(s) 943
SspMI CTAG 3 cut(s) 72, 417, 1148
StyD4I CCNGG 2 cut(s) 508, 1360
StyI CCWWGG 3 cut(s) 71, 397, 931
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 2 cut(s) 530, 1271
TaqI TCGA 4 cut(s) 229, 423, 599, 1082
TasI AATT 6 cut(s) 310, 477, 520, 988, 1348, 1435
TatI WGTACW 3 cut(s) 236, 1411, 1431
TauI GCSGC 2 cut(s) 362, 396
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 5 cut(s) 50, 482, 671, 992, 1444
Tru9I TTAA 5 cut(s) 50, 482, 671, 992, 1444
TscAI CASTG 2 cut(s) 123, 1028
TseFI GTSAC 5 cut(s) 123, 621, 1104, 1116, 1337
Tsp45I GTSAC 5 cut(s) 123, 621, 1104, 1116, 1337
TspDTI ATGAA 2 cut(s) 513, 1283
TspGWI ACGGA 1 cut(s) 1331
TspRI CASTG 2 cut(s) 123, 1028
VneI GTGCAC 1 cut(s) 1312
VpaK11BI GGWCC 2 cut(s) 8, 1364
XagI CCTNNNNNAGG 1 cut(s) 876
XapI RAATTY 2 cut(s) 477, 988
XceI RCATGY 1 cut(s) 1392
XcmI CCANNNNNNNNNTGG 1 cut(s) 961
XmaJI CCTAGG 1 cut(s) 71
XspI CTAG 3 cut(s) 72, 417, 1148
ZrmI AGTACT 1 cut(s) 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.