Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

18853808 .. 18855277

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTGGAGAAGGCCAAGTCCGTCAACCGGGCCTTGGACGCCGCCGTGTCGCTGAAAGACCCGGTCACGATCCACGAGGCGATGCGGTACTCTCTCCTCACCGGAGGCAAGCGGGTCCGACCCGTTTTGTGTCTTGTGGCGTGCGAGCTCATCGGAGGCGACGAGTTCGTGGCGATGCCAGCGGCCTGCGCTGTCGAGATGATCCACACCATGTCGCTGATCCACGACGACTTGCTGTGCATGGACAACGACAACCTCCGCCGTGGAAAACCCACCAACCACATGGTTTTCGGCGAAGACGTCGCCGTTTTAGTCGGCGACGCGCTTCTCTCCTTCGCGTTTGAGCACCTCGCCATGAGCCACAATAGAAGTGCAAGATCCAATATTGAGCTAGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

134

Amino Acids

14.58

Weight (kDa)

5.45

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	23 - 122	1.9e-28	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	303
AccII	CGCG	2 cut(s)	323, 338
AciI	CCGC	5 cut(s)	42, 85, 112, 182, 259
AclWI	GGATC	4 cut(s)	64, 196, 214, 372
AcyI	GRCGYC	2 cut(s)	39, 300
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	27, 34
AluBI	AGCT	2 cut(s)	148, 391
AluI	AGCT	2 cut(s)	148, 391
Alw21I	GWGCWC	2 cut(s)	150, 348
AlwI	GGATC	4 cut(s)	64, 196, 214, 372
AoxI	GGCC	3 cut(s)	12, 30, 183
AspLEI	GCGC	2 cut(s)	191, 325
AspS9I	GGNCC	2 cut(s)	30, 115
AsuC2I	CCSGG	2 cut(s)	29, 62
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	150
BauI	CACGAG	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	150, 348
BceAI	ACGGC	3 cut(s)	29, 246, 290
BcnI	CCSGG	2 cut(s)	29, 62
BfaI	CTAG	1 cut(s)	392
BisI	GCNGC	2 cut(s)	42, 183
BlsI	GCNGC	2 cut(s)	43, 184
Bme1390I	CCNGG	2 cut(s)	29, 62
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	30, 115
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	29, 62
BmsI	GCATC	2 cut(s)	72, 165
BpiI	GAAGAC	1 cut(s)	303
BpuMI	CCSGG	2 cut(s)	29, 62
BsaHI	GRCGYC	2 cut(s)	39, 300
BsaJI	CCNNGG	2 cut(s)	33, 262
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 34
BseDI	CCNNGG	2 cut(s)	33, 262
BseLI	CCNNNNNNNGG	2 cut(s)	27, 34
BseRI	GAGGAG	1 cut(s)	86
Bsh1236I	CGCG	2 cut(s)	323, 338
BshFI	GGCC	3 cut(s)	14, 32, 185
BsiHKAI	GWGCWC	2 cut(s)	150, 348
BsiSI	CCGG	3 cut(s)	28, 62, 102
BslI	CCNNNNNNNGG	2 cut(s)	27, 34
BsnI	GGCC	3 cut(s)	14, 32, 185
Bsp1286I	GDGCHC	2 cut(s)	150, 348
Bsp143I	GATC	4 cut(s)	69, 201, 219, 377
BspACI	CCGC	5 cut(s)	42, 85, 112, 182, 259
BspANI	GGCC	3 cut(s)	14, 32, 185
BspFNI	CGCG	2 cut(s)	323, 338
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	4 cut(s)	64, 196, 214, 372
BssECI	CCNNGG	2 cut(s)	33, 262
BssMI	GATC	4 cut(s)	69, 201, 219, 377
BssNI	GRCGYC	2 cut(s)	39, 300
BssSI	CACGAG	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	74
BstACI	GRCGYC	2 cut(s)	39, 300
BstC8I	GCNNGC	5 cut(s)	110, 142, 146, 180, 187
BstDSI	CCRYGG	1 cut(s)	262
BstFNI	CGCG	2 cut(s)	323, 338
BstHHI	GCGC	2 cut(s)	191, 325
BstKTI	GATC	4 cut(s)	72, 204, 222, 380
BstMBI	GATC	4 cut(s)	69, 201, 219, 377
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 179, 188
BstSCI	CCNGG	2 cut(s)	27, 60
BstUI	CGCG	2 cut(s)	323, 338
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	377
BstXI	CCANNNNNNTGG	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	14, 32, 185
BtgI	CCRYGG	1 cut(s)	262
BtgZI	GCGATG	2 cut(s)	95, 188
Cac8I	GCNNGC	5 cut(s)	110, 142, 146, 180, 187
CfoI	GCGC	2 cut(s)	191, 325
Cfr13I	GGNCC	2 cut(s)	30, 115
CseI	GACGC	2 cut(s)	47, 329
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	4 cut(s)	211, 241, 283, 355
CviJI	RGCY	6 cut(s)	14, 32, 148, 185, 360, 391
CviKI_1	RGCY	6 cut(s)	14, 32, 148, 185, 360, 391
CviQI	GTAC	1 cut(s)	88
DpnI	GATC	4 cut(s)	71, 203, 221, 379
DpnII	GATC	4 cut(s)	69, 201, 219, 377
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	4 cut(s)	214, 244, 286, 358
FaiI	YATR	4 cut(s)	212, 242, 284, 356
FatI	CATG	4 cut(s)	210, 240, 282, 354
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	42, 183
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	42, 183
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	2 cut(s)	190, 324
GluI	GCNGC	2 cut(s)	42, 183
HaeIII	GGCC	3 cut(s)	14, 32, 185
HapII	CCGG	3 cut(s)	28, 62, 102
HgaI	GACGC	2 cut(s)	47, 329
HhaI	GCGC	2 cut(s)	191, 325
Hin1I	GRCGYC	2 cut(s)	39, 300
Hin1II	CATG	4 cut(s)	214, 244, 286, 358
Hin6I	GCGC	2 cut(s)	189, 323
HinP1I	GCGC	2 cut(s)	189, 323
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HpaII	CCGG	3 cut(s)	28, 62, 102
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	119, 155
Hpy188III	TCNNGA	2 cut(s)	67, 196
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	4 cut(s)	164, 230, 305, 323
HpyAV	CCTTC	2 cut(s)	4, 343
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	2 cut(s)	240, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 179, 188
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	2 cut(s)	39, 300
Hsp92II	CATG	4 cut(s)	214, 244, 286, 358
HspAI	GCGC	2 cut(s)	189, 323
Kzo9I	GATC	4 cut(s)	69, 201, 219, 377
LpnPI	CCDG	5 cut(s)	41, 75, 115, 192, 199
LweI	GCATC	2 cut(s)	72, 165
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	4 cut(s)	71, 203, 221, 379
MboI	GATC	4 cut(s)	69, 201, 219, 377
MboII	GAAGA	1 cut(s)	308
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	2 cut(s)	150, 348
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	7 cut(s)	70, 98, 107, 149, 266, 359, 388
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	3 cut(s)	28, 62, 102
MspR9I	CCNGG	2 cut(s)	29, 62
MvnI	CGCG	2 cut(s)	323, 338
MwoI	GCNNNNNNNGC	3 cut(s)	38, 179, 188
NciI	CCSGG	2 cut(s)	29, 62
NdeII	GATC	4 cut(s)	69, 201, 219, 377
NlaIII	CATG	4 cut(s)	214, 244, 286, 358
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 297
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	43, 184
Psp124BI	GAGCTC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	30, 115
PsuI	RGATCY	1 cut(s)	377
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	150
SatI	GCNGC	2 cut(s)	42, 183
Sau3AI	GATC	4 cut(s)	69, 201, 219, 377
Sau96I	GGNCC	2 cut(s)	30, 115
ScrFI	CCNGG	2 cut(s)	29, 62
SduI	GDGCHC	2 cut(s)	150, 348
SetI	ASST	5 cut(s)	150, 258, 303, 351, 393
SfaNI	GCATC	2 cut(s)	72, 165
SinI	GGWCC	1 cut(s)	115
SsiI	CCGC	5 cut(s)	42, 85, 112, 182, 259
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	27, 60
StyI	CCWWGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	195
TauI	GCSGC	2 cut(s)	44, 185
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspGWI	ACGGA	1 cut(s)	10
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XspI	CTAG	1 cut(s)	392
ZraI	GACGTC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.