Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Reverse (-)

41371353 .. 41371775

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCCGGCAGCCTGCGCCATCGAGATGATCCACACCATGTCGTTGATCCACAACAACTTGCCGTGCATGGATAACGACGACCTCCGTTGCAGGAATCCCACCAACCACAAGGTTTTCGGCGAAGATGTTGTCGTTTTGGCCGGCGACGCGCTTCTCTCCTTCGCGTTCGAGCACCATGCCATGTCCACCGTCGGCGTTGAGCCTTCTAGAATCGTCCGAGCCGTGGAAGAGCTTGCCCGATCAATATGGTCGGAGGGATTGGTGGCGGGTCAAGTCGTGGATATCCACTCCGAGGGGTTATCCAACGTGGGACTGGAGCACCTAGAGTACATACACATCTCAGCTCACCTTCTACCAGTGAGAACTCCATATGCTGCCGTAGCTACCAAGGTTCGAGGTTTCCCAGAAAGAACCGTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

140

Amino Acids

15.33

Weight (kDa)

5.63

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	3 - 111	2.6e-14	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	149, 164
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	2 cut(s)	22, 40
AcoI	YGGCCR	1 cut(s)	138
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	223, 292
AluBI	AGCT	3 cut(s)	232, 344, 383
AluI	AGCT	3 cut(s)	232, 344, 383
Alw21I	GWGCWC	2 cut(s)	174, 321
AlwI	GGATC	2 cut(s)	22, 40
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	8, 374
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AspLEI	GCGC	2 cut(s)	17, 151
AsuHPI	GGTGA	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	174, 321
BbvI	GCAGC	2 cut(s)	20, 361
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	3 cut(s)	46, 206, 362
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BfaI	CTAG	2 cut(s)	207, 323
BisI	GCNGC	2 cut(s)	9, 375
BlsI	GCNGC	2 cut(s)	10, 376
BpmI	CTGGAG	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	222, 291, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 292
Bse118I	RCCGGY	2 cut(s)	4, 140
Bse1I	ACTGG	2 cut(s)	318, 356
BseDI	CCNNGG	3 cut(s)	222, 291, 387
BseLI	CCNNNNNNNGG	2 cut(s)	223, 292
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	318, 356
BseXI	GCAGC	2 cut(s)	20, 361
Bsh1236I	CGCG	2 cut(s)	149, 164
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	174, 321
BsiSI	CCGG	2 cut(s)	5, 141
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	223, 292
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	174, 321
Bsp143I	GATC	3 cut(s)	27, 45, 239
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	353
BspFNI	CGCG	2 cut(s)	149, 164
BspPI	GGATC	2 cut(s)	22, 40
BspQI	GCTCTTC	1 cut(s)	222
BsrFI	RCCGGY	2 cut(s)	4, 140
BsrI	ACTGG	2 cut(s)	318, 356
BssAI	RCCGGY	2 cut(s)	4, 140
BssECI	CCNNGG	3 cut(s)	222, 291, 387
BssMI	GATC	3 cut(s)	27, 45, 239
BssT1I	CCWWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	190, 415
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	4 cut(s)	6, 13, 142, 234
BstDEI	CTNAG	1 cut(s)	340
BstDSI	CCRYGG	1 cut(s)	222
BstFNI	CGCG	2 cut(s)	149, 164
BstHHI	GCGC	2 cut(s)	17, 151
BstKTI	GATC	3 cut(s)	30, 48, 242
BstMBI	GATC	3 cut(s)	27, 45, 239
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 146, 380
BstUI	CGCG	2 cut(s)	149, 164
BstV1I	GCAGC	2 cut(s)	20, 361
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	4 cut(s)	6, 13, 142, 234
CfoI	GCGC	2 cut(s)	17, 151
Cfr10I	RCCGGY	2 cut(s)	4, 140
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	4 cut(s)	37, 67, 176, 181
CviJI	RGCY	7 cut(s)	11, 140, 202, 221, 232, 344, 383
CviKI_1	RGCY	7 cut(s)	11, 140, 202, 221, 232, 344, 383
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	340
DpnI	GATC	3 cut(s)	29, 47, 241
DpnII	GATC	3 cut(s)	27, 45, 239
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	387
Eco32I	GATATC	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	4 cut(s)	40, 70, 179, 184
FaiI	YATR	8 cut(s)	38, 68, 177, 182, 247, 332, 370, 372
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	4 cut(s)	36, 66, 175, 180
FauI	CCCGC	1 cut(s)	259
FauNDI	CATATG	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	9, 375
Fsp4HI	GCNGC	2 cut(s)	9, 375
FspBI	CTAG	2 cut(s)	207, 323
GlaI	GCGC	2 cut(s)	16, 150
GluI	GCNGC	2 cut(s)	9, 375
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	2 cut(s)	5, 141
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	17, 151
Hin1II	CATG	4 cut(s)	40, 70, 179, 184
Hin6I	GCGC	2 cut(s)	15, 149
HinP1I	GCGC	2 cut(s)	15, 149
HinfI	GANTC	2 cut(s)	94, 210
HpaII	CCGG	2 cut(s)	5, 141
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	218, 253, 292
Hpy188III	TCNNGA	2 cut(s)	22, 207
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	3 cut(s)	80, 149, 194
HpyAV	CCTTC	3 cut(s)	169, 213, 359
HpyCH4III	ACNGT	2 cut(s)	190, 415
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	66, 90
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 146, 380
HpyF3I	CTNAG	1 cut(s)	340
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	4 cut(s)	40, 70, 179, 184
HspAI	GCGC	2 cut(s)	15, 149
KroI	GCCGGC	2 cut(s)	4, 140
KroNI	GCCGGC	2 cut(s)	6, 142
Kzo9I	GATC	3 cut(s)	27, 45, 239
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	7 cut(s)	18, 25, 76, 154, 299, 369, 417
Lsp1109I	GCAGC	2 cut(s)	20, 361
MaeI	CTAG	2 cut(s)	207, 323
MaeII	ACGT	1 cut(s)	306
MalI	GATC	3 cut(s)	29, 47, 241
MboI	GATC	3 cut(s)	27, 45, 239
MboII	GAAGA	2 cut(s)	134, 239
MhlI	GDGCHC	2 cut(s)	174, 321
MmeI	TCCRAC	2 cut(s)	231, 327
MnlI	CCTC	4 cut(s)	92, 247, 286, 389
MroNI	GCCGGC	2 cut(s)	4, 140
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	2 cut(s)	5, 141
MvnI	CGCG	2 cut(s)	149, 164
MwoI	GCNNNNNNNGC	3 cut(s)	14, 146, 380
NaeI	GCCGGC	2 cut(s)	6, 142
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	3 cut(s)	27, 45, 239
NgoMIV	GCCGGC	2 cut(s)	4, 140
NlaIII	CATG	4 cut(s)	40, 70, 179, 184
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PdiI	GCCGGC	2 cut(s)	6, 142
PfeI	GAWTC	2 cut(s)	94, 210
PkrI	GCNGC	2 cut(s)	10, 376
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	222
SatI	GCNGC	2 cut(s)	9, 375
Sau3AI	GATC	3 cut(s)	27, 45, 239
SduI	GDGCHC	2 cut(s)	174, 321
SmiMI	CAYNNNNRTG	1 cut(s)	23
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	2 cut(s)	207, 323
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	190, 415
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	21, 168, 394
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	94, 210
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	2 cut(s)	8, 374
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	363
XbaI	TCTAGA	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	2 cut(s)	207, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.