Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Reverse (-)

38673438 .. 38674081

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGGCGGCGAGATCGCTTAGTCGAGAGGAAAACAAGCGATTCACCAAAGAATGGTAAGCGGGTGCCGACAATGTGTCGATCTAAGTATATAGCAAGGCACCGTGCCTTGGGGAACCAACGCCATTGCAAGCGACCGACTCGTTTCCTTCTCTTCTCCGAAAGGACGCCGACCCGATTCCGTCACGGCAATCCCGACCAAGCCGGAGACCGTGAAGGAGCGAAGGAAGAGGAATCCGGGAAGCCCGGTTTCAATTTCAAGACCGACATGGTGGAGAAGGCCGAGTCCATCAACCGGGCCTTAGGCGTCGCCGTTTCGCCGAAAGACCCGATTATGATCCACGAAGCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

117

Amino Acids

13.38

Weight (kDa)

10.37

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	64, 99
AccB7I	CCANNNNNTGG	1 cut(s)	53
AciI	CCGC	2 cut(s)	7, 61
AclWI	GGATC	1 cut(s)	331
AcyI	GRCGYC	2 cut(s)	167, 306
AfiI	CCNNNNNNNGG	3 cut(s)	53, 109, 294
AgsI	TTSAA	2 cut(s)	253, 259
AhdI	GACNNNNNGTC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	2 cut(s)	279, 297
AspS9I	GGNCC	1 cut(s)	297
AsuC2I	CCSGG	3 cut(s)	238, 246, 296
AsuHPI	GGTGA	1 cut(s)	36
AxyI	CCTNAGG	1 cut(s)	301
BanI	GGYRCC	2 cut(s)	64, 99
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	2 cut(s)	202, 296
BcnI	CCSGG	3 cut(s)	238, 246, 296
BcoDI	GTCTC	1 cut(s)	201
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	3 cut(s)	238, 246, 296
BmeRI	GACNNNNNGTC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	3 cut(s)	66, 101, 116
BmrFI	CCNGG	3 cut(s)	238, 246, 296
BpuMI	CCSGG	3 cut(s)	238, 246, 296
BsaBI	GATNNNNATC	1 cut(s)	335
BsaHI	GRCGYC	2 cut(s)	167, 306
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 109, 294
Bse21I	CCTNAGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	335
BseLI	CCNNNNNNNGG	3 cut(s)	53, 109, 294
BseMI	GCAATG	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	281, 299
BshNI	GGYRCC	2 cut(s)	64, 99
BsiEI	CGRYCG	1 cut(s)	137
BsiSI	CCGG	4 cut(s)	204, 237, 246, 295
BslI	CCNNNNNNNGG	3 cut(s)	53, 109, 294
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	281, 299
Bso31I	GGTCTC	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	13, 80, 336
BspACI	CCGC	2 cut(s)	7, 61
BspANI	GGCC	2 cut(s)	281, 299
BspLI	GGNNCC	3 cut(s)	66, 101, 116
BspPI	GGATC	1 cut(s)	331
BspT107I	GGYRCC	2 cut(s)	64, 99
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	13, 80, 336
BssNI	GRCGYC	2 cut(s)	167, 306
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	104, 212
Bst6I	CTCTTC	2 cut(s)	158, 222
BstACI	GRCGYC	2 cut(s)	167, 306
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	19, 84, 301
BstKTI	GATC	3 cut(s)	16, 83, 339
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	13, 80, 336
BstMCI	CGRYCG	1 cut(s)	137
BstSCI	CCNGG	3 cut(s)	236, 244, 294
Bsu36I	CCTNAGG	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	281, 299
Cac8I	GCNNGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	297
CseI	GACGC	2 cut(s)	175, 295
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	4 cut(s)	203, 244, 281, 299
CviKI_1	RGCY	4 cut(s)	203, 244, 281, 299
DdeI	CTNAG	3 cut(s)	19, 84, 301
DpnI	GATC	3 cut(s)	15, 82, 338
DpnII	GATC	3 cut(s)	13, 80, 336
DriI	GACNNNNNGTC	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	158, 222
Eam1105I	GACNNNNNGTC	1 cut(s)	75
EarI	CTCTTC	2 cut(s)	158, 222
Eco130I	CCWWGG	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	271
FaiI	YATR	4 cut(s)	90, 92, 269, 335
FatI	CATG	1 cut(s)	267
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	281, 299
HapII	CCGG	4 cut(s)	204, 237, 246, 295
HgaI	GACGC	2 cut(s)	175, 295
Hin1I	GRCGYC	2 cut(s)	167, 306
Hin1II	CATG	1 cut(s)	271
HinfI	GANTC	5 cut(s)	41, 139, 177, 233, 284
HpaII	CCGG	4 cut(s)	204, 237, 246, 295
HphI	GGTGA	1 cut(s)	36
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	3 cut(s)	25, 194, 259
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	4 cut(s)	158, 209, 217, 271
HpyCH4III	ACNGT	2 cut(s)	104, 212
HpyCH4V	TGCA	1 cut(s)	129
HpyF3I	CTNAG	3 cut(s)	19, 84, 301
Hsp92I	GRCGYC	2 cut(s)	167, 306
Hsp92II	CATG	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	13, 80, 336
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	4 cut(s)	217, 250, 259, 308
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	3 cut(s)	15, 82, 338
MboI	GATC	3 cut(s)	13, 80, 336
MboII	GAAGA	2 cut(s)	145, 239
MluCI	AATT	1 cut(s)	253
MlyI	GAGTC	2 cut(s)	133, 293
MnlI	CCTC	2 cut(s)	21, 223
MspI	CCGG	4 cut(s)	204, 237, 246, 295
MspR9I	CCNGG	3 cut(s)	238, 246, 296
NciI	CCSGG	3 cut(s)	238, 246, 296
NdeII	GATC	3 cut(s)	13, 80, 336
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	3 cut(s)	66, 101, 116
NmeAIII	GCCGAG	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	41, 177, 233
PflMI	CCANNNNNTGG	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	2 cut(s)	133, 292
PpsI	GAGTC	2 cut(s)	133, 292
PspN4I	GGNNCC	3 cut(s)	66, 101, 116
PspPI	GGNCC	1 cut(s)	297
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	3 cut(s)	13, 80, 336
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	2 cut(s)	133, 293
ScrFI	CCNGG	3 cut(s)	238, 246, 296
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	2 cut(s)	7, 61
StyD4I	CCNGG	3 cut(s)	236, 244, 294
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	104, 212
TaqI	TCGA	2 cut(s)	24, 79
TaqII	GACCGA	2 cut(s)	151, 278
TasI	AATT	1 cut(s)	253
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	3 cut(s)	41, 177, 233
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.