Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

14021699 .. 14026621

Gene Structure 4923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001318

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGAGAAGAGAGATTGAGAAGCGAGTCGATGAAGAGAAGAATGAGAAGAAGAAGAAGATAATGGTATCCATCACGAAGGCCAAACTGACCTTGGAATTGAAGCAAAAGTCTAATCCAGTACGATTGATGGAGACTGTGAAGGAGCAGAAGGAAGAGGAATCTGGGAAGCCCAGTTTCAATTTCAAGACCGACATGGTGGAGAAGGCAGAATCCATCAACTGGGCCCTAGAAGCCGCCATTTCACTGAAAGACTCGATTACGATCCACGAAGTGATGTGGTACTCTTTGCTCGCCGGAGGCAAGAGAGTCCGACACGTTCTGTGTGTCGCGGCGTGCGAGCTCGTCAGAGGGTCTGAGTCCGTCGCCATGCCGGCAGCCTGCGCCGTCAAGATGATCCACACCATGTCGTTGATCCACGACGACTTGACGTGCATGGATAACAACGACCTCCGCCGCGGGAAGCCCACCAACGACAAGGTTTTCGGAGAAGATGTTGCCGTTTTGGCCGGCGACGAGCTTCTCTCCTTCGCGTACGAGCACCTAGCCTTGTCCACCGTTGGCGTCGAGCCTTCTAGAATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

196

Amino Acids

21.89

Weight (kDa)

6.54

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	89 - 183	1.1e-24	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	222
AccII	CGCG	3 cut(s)	332, 459, 533
AciI	CCGC	5 cut(s)	237, 332, 454, 457, 459
AclWI	GGATC	3 cut(s)	259, 391, 409
AcoI	YGGCCR	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	564
AdeI	CACNNNGTG	1 cut(s)	274
AfaI	GTAC	3 cut(s)	123, 284, 536
AfiI	CCNNNNNNNGG	1 cut(s)	222
AflIII	ACRYGT	1 cut(s)	316
AgsI	TTSAA	3 cut(s)	103, 181, 187
AjiI	CACGTC	1 cut(s)	432
AluBI	AGCT	2 cut(s)	343, 520
AluI	AGCT	2 cut(s)	343, 520
Alw21I	GWGCWC	2 cut(s)	345, 543
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	259, 391, 409
AoxI	GGCC	3 cut(s)	81, 225, 507
ApaI	GGGCCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	2 cut(s)	225, 226
AsuHPI	GGTGA	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	229
BanII	GRGCYC	2 cut(s)	229, 345
Bbv12I	GWGCWC	2 cut(s)	345, 543
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	3 cut(s)	80, 124, 224
BceAI	ACGGC	2 cut(s)	371, 485
BciVI	GTATCC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	3 cut(s)	230, 545, 576
BfuI	GTATCC	1 cut(s)	79
BglI	GCCNNNNNGGC	2 cut(s)	374, 506
BisI	GCNGC	4 cut(s)	237, 333, 378, 457
BlsI	GCNGC	4 cut(s)	238, 334, 379, 458
BmgBI	CACGTC	1 cut(s)	432
BmgT120I	GGNCC	2 cut(s)	225, 226
BmiI	GGNNCC	1 cut(s)	227
BmrI	ACTGGG	2 cut(s)	168, 232
BmuI	ACTGGG	2 cut(s)	168, 232
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BsaBI	GATNNNNATC	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	564
BsaJI	CCNNGG	2 cut(s)	93, 457
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse118I	RCCGGY	2 cut(s)	373, 509
Bse1I	ACTGG	3 cut(s)	119, 174, 227
Bse8I	GATNNNNATC	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	93, 457
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	3 cut(s)	119, 174, 227
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	389
Bsh1236I	CGCG	3 cut(s)	332, 459, 533
BshFI	GGCC	3 cut(s)	83, 227, 509
BsiHKAI	GWGCWC	2 cut(s)	345, 543
BsiSI	CCGG	3 cut(s)	297, 374, 510
BsiWI	CGTACG	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	83, 227, 509
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	3 cut(s)	229, 345, 543
Bsp143I	GATC	3 cut(s)	264, 396, 414
BspACI	CCGC	5 cut(s)	237, 332, 454, 457, 459
BspANI	GGCC	3 cut(s)	83, 227, 509
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	3 cut(s)	332, 459, 533
BspLI	GGNNCC	1 cut(s)	227
BspPI	GGATC	3 cut(s)	259, 391, 409
BsrFI	RCCGGY	2 cut(s)	373, 509
BsrI	ACTGG	3 cut(s)	119, 174, 227
BssAI	RCCGGY	2 cut(s)	373, 509
BssECI	CCNNGG	2 cut(s)	93, 457
BssMI	GATC	3 cut(s)	264, 396, 414
BssNI	GRCGYC	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	139, 559
Bst6I	CTCTTC	3 cut(s)	4, 30, 150
BstACI	GRCGYC	1 cut(s)	564
BstC8I	GCNNGC	6 cut(s)	294, 337, 341, 375, 382, 511
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	457
BstFNI	CGCG	3 cut(s)	332, 459, 533
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	3 cut(s)	267, 399, 417
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	3 cut(s)	264, 396, 414
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 374, 383, 506
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	3 cut(s)	332, 459, 533
BstV1I	GCAGC	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	83, 227, 509
BtgI	CCRYGG	1 cut(s)	457
BtrI	CACGTC	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	6 cut(s)	294, 337, 341, 375, 382, 511
CfoI	GCGC	1 cut(s)	386
Cfr10I	RCCGGY	2 cut(s)	373, 509
Cfr13I	GGNCC	2 cut(s)	225, 226
Cfr42I	CCGCGG	1 cut(s)	460
CseI	GACGC	1 cut(s)	553
Csp6I	GTAC	3 cut(s)	122, 283, 535
CviAII	CATG	4 cut(s)	196, 370, 406, 436
CviQI	GTAC	3 cut(s)	122, 283, 535
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	3 cut(s)	266, 398, 416
DpnII	GATC	3 cut(s)	264, 396, 414
DraIII	CACNNNGTG	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	3 cut(s)	4, 30, 150
EarI	CTCTTC	3 cut(s)	4, 30, 150
EciI	GGCGGA	1 cut(s)	443
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	2 cut(s)	229, 345
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	2 cut(s)	229, 345
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	4 cut(s)	199, 373, 409, 439
FaiI	YATR	4 cut(s)	197, 371, 407, 437
FatI	CATG	4 cut(s)	195, 369, 405, 435
FauI	CCCGC	1 cut(s)	452
Fnu4HI	GCNGC	4 cut(s)	237, 333, 378, 457
FriOI	GRGCYC	2 cut(s)	229, 345
Fsp4HI	GCNGC	4 cut(s)	237, 333, 378, 457
FspBI	CTAG	3 cut(s)	230, 545, 576
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	4 cut(s)	237, 333, 378, 457
HaeIII	GGCC	3 cut(s)	83, 227, 509
HapII	CCGG	3 cut(s)	297, 374, 510
HgaI	GACGC	1 cut(s)	553
HhaI	GCGC	1 cut(s)	386
Hin1I	GRCGYC	1 cut(s)	564
Hin1II	CATG	4 cut(s)	199, 373, 409, 439
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HinfI	GANTC	6 cut(s)	27, 161, 212, 254, 309, 359
HpaII	CCGG	3 cut(s)	297, 374, 510
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	5 cut(s)	314, 350, 358, 488, 587
Hpy188III	TCNNGA	4 cut(s)	76, 187, 391, 576
Hpy8I	GTNNAC	1 cut(s)	555
Hpy99I	CGWCG	4 cut(s)	368, 425, 518, 569
HpyAV	CCTTC	6 cut(s)	73, 136, 145, 199, 538, 582
HpyCH4III	ACNGT	2 cut(s)	139, 559
HpyCH4IV	ACGT	2 cut(s)	318, 431
HpyCH4V	TGCA	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 374, 383, 506
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	2 cut(s)	318, 431
Hsp92I	GRCGYC	1 cut(s)	564
Hsp92II	CATG	4 cut(s)	199, 373, 409, 439
HspAI	GCGC	1 cut(s)	384
KroI	GCCGGC	2 cut(s)	373, 509
KroNI	GCCGGC	2 cut(s)	375, 511
KspI	CCGCGG	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	264, 396, 414
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	8 cut(s)	132, 150, 187, 208, 310, 387, 394, 523
Lsp1109I	GCAGC	1 cut(s)	389
MaeI	CTAG	3 cut(s)	230, 545, 576
MaeII	ACGT	2 cut(s)	318, 431
MalI	GATC	3 cut(s)	266, 398, 416
MboI	GATC	3 cut(s)	264, 396, 414
MboII	GAAGA	9 cut(s)	21, 47, 52, 61, 64, 67, 70, 167, 503
MhlI	GDGCHC	3 cut(s)	229, 345, 543
MluCI	AATT	3 cut(s)	98, 181, 579
MlyI	GAGTC	4 cut(s)	36, 248, 318, 368
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	4 cut(s)	151, 293, 344, 461
MroNI	GCCGGC	2 cut(s)	373, 509
MspA1I	CMGCKG	1 cut(s)	459
MspI	CCGG	3 cut(s)	297, 374, 510
MvnI	CGCG	3 cut(s)	332, 459, 533
MwoI	GCNNNNNNNGC	4 cut(s)	233, 374, 383, 506
NaeI	GCCGGC	2 cut(s)	375, 511
NdeII	GATC	3 cut(s)	264, 396, 414
NgoMIV	GCCGGC	2 cut(s)	373, 509
NlaIII	CATG	4 cut(s)	199, 373, 409, 439
NlaIV	GGNNCC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PdiI	GCCGGC	2 cut(s)	375, 511
PfeI	GAWTC	2 cut(s)	161, 212
Pfl23II	CGTACG	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	222
PkrI	GCNGC	4 cut(s)	238, 334, 379, 458
PleI	GAGTC	4 cut(s)	35, 248, 317, 367
PpsI	GAGTC	4 cut(s)	35, 248, 317, 367
Psp124BI	GAGCTC	1 cut(s)	345
PspLI	CGTACG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	227
PspOMI	GGGCCC	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	225, 226
RsaI	GTAC	3 cut(s)	123, 284, 536
RsaNI	GTAC	3 cut(s)	122, 283, 535
SacI	GAGCTC	1 cut(s)	345
SacII	CCGCGG	1 cut(s)	460
SatI	GCNGC	4 cut(s)	237, 333, 378, 457
Sau3AI	GATC	3 cut(s)	264, 396, 414
Sau96I	GGNCC	2 cut(s)	225, 226
SchI	GAGTC	4 cut(s)	36, 248, 318, 368
SduI	GDGCHC	3 cut(s)	229, 345, 543
SetI	ASST	8 cut(s)	95, 321, 345, 434, 453, 483, 522, 546
Sfr303I	CCGCGG	1 cut(s)	460
SgrBI	CCGCGG	1 cut(s)	460
Sse9I	AATT	3 cut(s)	98, 181, 579
SsiI	CCGC	5 cut(s)	237, 332, 454, 457, 459
SspMI	CTAG	3 cut(s)	230, 545, 576
SstI	GAGCTC	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	139, 559
TaiI	ACGT	2 cut(s)	321, 434
TaqI	TCGA	3 cut(s)	30, 257, 567
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	3 cut(s)	98, 181, 579
TauI	GCSGC	3 cut(s)	239, 335, 459
TfiI	GAWTC	2 cut(s)	161, 212
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	1 cut(s)	252
Van91I	CCANNNNNTGG	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	3 cut(s)	230, 545, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.