Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015866.1

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

17104 .. 18847

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015866.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggtatcgagtatcgacggcaaagagattgagatggtatcgacgacaaagagagggaggctgagggagtatcgacgcgacgacgttcgggtcgggccctcggtctttcgggtccggacgcccagccctaccagaatctctctccctctccaccgtcgctggaattatgccagaaatcaaactccagatcagaactcgacgccgccatctcaccagggccttagacgatgccatttcgctgaaagacccgattacgatccacgaagcgcgtgcgagatcgtcagagggtctgagtcagttaccatgccggcggcttgcgccgtcaagatgatccacaccatgttgttgatccacgacgacttgccgtgcatggataatgacgatctccgccacgggaagcctaccaaccacaaggttttcggcgaagacgttgcagttttggcgggcgaagcgcttctctccttcgcggtcgagcacctagccttgtccaccgtcggcatcgagccttctagaatcatccgagccgtggaagagcttgcccggtcaatcgggtcggagggattggtagcgggtcagtcgtggatatccactctgaggggttatccgacgtgggactggagcacctggatcggattccggattccggtcatcggtcgccggatttcggtgaccggttcccggaatccggtcatcggtcgccggagtccggtcaccggtagccggagtccggagtcctgtcgccggagaccgcgccggccactggtcaccgaagcacaacaaggtggaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

263

Amino Acids

29.49

Weight (kDa)

10.23

Isoelectric Point (pI)

77.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccII	CGCG	4 cut(s)	78, 269, 467, 751
AccIII	TCCGGA	3 cut(s)	114, 636, 727
AciI	CCGC	7 cut(s)	203, 311, 388, 443, 467, 569, 749
AclWI	GGATC	4 cut(s)	251, 325, 343, 635
AcoI	YGGCCR	1 cut(s)	755
AcyI	GRCGYC	2 cut(s)	119, 200
AfeI	AGCGCT	1 cut(s)	453
AgeI	ACCGGT	2 cut(s)	671, 713
AjiI	CACGTC	1 cut(s)	609
AjnI	CCWGG	2 cut(s)	213, 623
AluBI	AGCT	1 cut(s)	535
AluI	AGCT	1 cut(s)	535
Alw21I	GWGCWC	2 cut(s)	477, 623
Alw26I	GTCTC	1 cut(s)	739
AlwI	GGATC	4 cut(s)	251, 325, 343, 635
Aor13HI	TCCGGA	3 cut(s)	114, 636, 727
Aor51HI	AGCGCT	1 cut(s)	453
AoxI	GGCC	3 cut(s)	95, 217, 755
ApaI	GGGCCC	1 cut(s)	99
AsiGI	ACCGGT	2 cut(s)	671, 713
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	4 cut(s)	269, 320, 454, 753
AspS9I	GGNCC	4 cut(s)	95, 96, 112, 217
AsuC2I	CCSGG	2 cut(s)	541, 679
AsuHPI	GGTGA	4 cut(s)	203, 679, 703, 757
AvaII	GGWCC	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	477, 623
BbvCI	CCTCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	28, 214
BceAI	ACGGC	4 cut(s)	34, 305, 349, 509
BcgI	CGANNNNNNTGC	6 cut(s)	252, 286, 413, 447, 610, 644
BciT130I	CCWGG	2 cut(s)	215, 625
BcnI	CCSGG	2 cut(s)	541, 679
BcoDI	GTCTC	1 cut(s)	739
BfaI	CTAG	2 cut(s)	479, 510
BfoI	RGCGCY	1 cut(s)	455
BisI	GCNGC	2 cut(s)	203, 312
BlsI	GCNGC	2 cut(s)	204, 313
Bme1390I	CCNGG	4 cut(s)	215, 541, 625, 679
Bme18I	GGWCC	1 cut(s)	112
BmgBI	CACGTC	1 cut(s)	609
BmgT120I	GGNCC	4 cut(s)	95, 96, 112, 217
BmiI	GGNNCC	3 cut(s)	97, 113, 676
BmrFI	CCNGG	4 cut(s)	215, 541, 625, 679
BmsI	GCATC	2 cut(s)	218, 507
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	2 cut(s)	168, 637
Bpu10I	CCTNAGC	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	541, 679
BsaBI	GATNNNNATC	1 cut(s)	255
BsaHI	GRCGYC	2 cut(s)	119, 200
BsaI	GGTCTC	1 cut(s)	739
BsaJI	CCNNGG	4 cut(s)	99, 214, 391, 525
BsaWI	WCCGGW	8 cut(s)	114, 636, 643, 671, 685, 706, 713, 727
Bse118I	RCCGGY	4 cut(s)	307, 671, 713, 753
Bse1I	ACTGG	2 cut(s)	620, 765
Bse8I	GATNNNNATC	1 cut(s)	255
BseAI	TCCGGA	3 cut(s)	114, 636, 727
BseBI	CCWGG	2 cut(s)	215, 625
BseDI	CCNNGG	4 cut(s)	99, 214, 391, 525
BseGI	GGATG	1 cut(s)	516
BseJI	GATNNNNATC	1 cut(s)	255
BseMII	CTCAG	3 cut(s)	53, 282, 584
BseNI	ACTGG	2 cut(s)	620, 765
BseSI	GKGCMC	1 cut(s)	99
BseYI	CCCAGC	1 cut(s)	122
Bsh1236I	CGCG	4 cut(s)	78, 269, 467, 751
Bsh1285I	CGRYCG	3 cut(s)	471, 655, 697
BshFI	GGCC	3 cut(s)	97, 219, 757
BshTI	ACCGGT	2 cut(s)	671, 713
BsiEI	CGRYCG	3 cut(s)	471, 655, 697
BsiHKAI	GWGCWC	2 cut(s)	477, 623
BslFI	GGGAC	1 cut(s)	626
BsmAI	GTCTC	1 cut(s)	739
BsmFI	GGGAC	1 cut(s)	626
BsnI	GGCC	3 cut(s)	97, 219, 757
Bso31I	GGTCTC	1 cut(s)	739
Bsp120I	GGGCCC	1 cut(s)	95
Bsp1286I	GDGCHC	3 cut(s)	99, 477, 623
Bsp13I	TCCGGA	3 cut(s)	114, 636, 727
Bsp143I	GATC	7 cut(s)	187, 256, 276, 330, 348, 382, 627
BspACI	CCGC	7 cut(s)	203, 311, 388, 443, 467, 569, 749
BspANI	GGCC	3 cut(s)	97, 219, 757
BspCNI	CTCAG	3 cut(s)	54, 283, 585
BspEI	TCCGGA	3 cut(s)	114, 636, 727
BspFNI	CGCG	4 cut(s)	78, 269, 467, 751
BspLI	GGNNCC	3 cut(s)	97, 113, 676
BspPI	GGATC	4 cut(s)	251, 325, 343, 635
BspQI	GCTCTTC	1 cut(s)	525
BspTNI	GGTCTC	1 cut(s)	739
BsrFI	RCCGGY	4 cut(s)	307, 671, 713, 753
BsrI	ACTGG	2 cut(s)	620, 765
BssAI	RCCGGY	4 cut(s)	307, 671, 713, 753
BssECI	CCNNGG	4 cut(s)	99, 214, 391, 525
BssMI	GATC	7 cut(s)	187, 256, 276, 330, 348, 382, 627
BssNI	GRCGYC	2 cut(s)	119, 200
Bst2UI	CCWGG	2 cut(s)	215, 625
Bst4CI	ACNGT	2 cut(s)	155, 493
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	2 cut(s)	119, 200
BstC8I	GCNNGC	6 cut(s)	271, 309, 316, 445, 537, 755
BstDEI	CTNAG	4 cut(s)	62, 221, 291, 593
BstDSI	CCRYGG	2 cut(s)	391, 525
BstEII	GGTNACC	3 cut(s)	667, 709, 763
BstF5I	GGATG	1 cut(s)	516
BstFNI	CGCG	4 cut(s)	78, 269, 467, 751
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	4 cut(s)	269, 320, 454, 753
BstKTI	GATC	7 cut(s)	190, 259, 279, 333, 351, 385, 630
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	7 cut(s)	187, 256, 276, 330, 348, 382, 627
BstMCI	CGRYCG	3 cut(s)	471, 655, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 440, 449
BstNI	CCWGG	2 cut(s)	215, 625
BstPI	GGTNACC	3 cut(s)	667, 709, 763
BstSCI	CCNGG	4 cut(s)	213, 539, 623, 677
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	4 cut(s)	78, 269, 467, 751
BstV2I	GAAGAC	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	97, 219, 757
BtgI	CCRYGG	2 cut(s)	391, 525
BtrI	CACGTC	1 cut(s)	609
BtsCI	GGATG	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	758
Cac8I	GCNNGC	6 cut(s)	271, 309, 316, 445, 537, 755
CfoI	GCGC	4 cut(s)	269, 320, 454, 753
Cfr10I	RCCGGY	4 cut(s)	307, 671, 713, 753
Cfr13I	GGNCC	4 cut(s)	95, 96, 112, 217
CseI	GACGC	3 cut(s)	84, 127, 208
CspAI	ACCGGT	2 cut(s)	671, 713
CviAII	CATG	3 cut(s)	304, 340, 370
DdeI	CTNAG	4 cut(s)	62, 221, 291, 593
DpnI	GATC	7 cut(s)	189, 258, 278, 332, 350, 384, 629
DpnII	GATC	7 cut(s)	187, 256, 276, 330, 348, 382, 627
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	755
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
EciI	GGCGGA	1 cut(s)	377
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	739
Eco32I	GATATC	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	112
Eco47III	AGCGCT	1 cut(s)	453
Eco91I	GGTNACC	3 cut(s)	667, 709, 763
EcoO109I	RGGNCCY	2 cut(s)	96, 217
EcoO65I	GGTNACC	3 cut(s)	667, 709, 763
EcoRII	CCWGG	2 cut(s)	213, 623
EcoRV	GATATC	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	3 cut(s)	307, 343, 373
FaiI	YATR	4 cut(s)	168, 305, 341, 371
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	3 cut(s)	303, 339, 369
FauI	CCCGC	2 cut(s)	436, 562
Fnu4HI	GCNGC	2 cut(s)	203, 312
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	2 cut(s)	203, 312
FspBI	CTAG	2 cut(s)	479, 510
GlaI	GCGC	4 cut(s)	268, 319, 453, 752
GluI	GCNGC	2 cut(s)	203, 312
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	2 cut(s)	168, 637
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	3 cut(s)	97, 219, 757
HgaI	GACGC	3 cut(s)	84, 127, 208
HhaI	GCGC	4 cut(s)	269, 320, 454, 753
Hin1I	GRCGYC	2 cut(s)	119, 200
Hin1II	CATG	3 cut(s)	307, 343, 373
Hin6I	GCGC	4 cut(s)	267, 318, 452, 751
HinP1I	GCGC	4 cut(s)	267, 318, 452, 751
HinfI	GANTC	9 cut(s)	135, 293, 513, 633, 640, 682, 703, 724, 731
HphI	GGTGA	4 cut(s)	203, 679, 703, 757
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	8 cut(s)	192, 284, 292, 521, 556, 594, 606, 632
Hpy188III	TCNNGA	6 cut(s)	115, 185, 325, 510, 637, 728
Hpy8I	GTNNAC	1 cut(s)	489
HpyAV	CCTTC	3 cut(s)	472, 516, 780
HpyCH4III	ACNGT	2 cut(s)	155, 493
HpyCH4IV	ACGT	3 cut(s)	84, 429, 608
HpyCH4V	TGCA	2 cut(s)	369, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 440, 449
HpyF3I	CTNAG	4 cut(s)	62, 221, 291, 593
HpySE526I	ACGT	3 cut(s)	84, 429, 608
Hsp92I	GRCGYC	2 cut(s)	119, 200
Hsp92II	CATG	3 cut(s)	307, 343, 373
HspAI	GCGC	4 cut(s)	267, 318, 452, 751
Kpn2I	TCCGGA	3 cut(s)	114, 636, 727
KroI	GCCGGC	2 cut(s)	307, 753
KroNI	GCCGGC	2 cut(s)	309, 755
Kzo9I	GATC	7 cut(s)	187, 256, 276, 330, 348, 382, 627
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	1 cut(s)	618
LweI	GCATC	2 cut(s)	218, 507
MaeI	CTAG	2 cut(s)	479, 510
MaeII	ACGT	3 cut(s)	84, 429, 608
MaeIII	GTNAC	4 cut(s)	298, 667, 709, 763
MalI	GATC	7 cut(s)	189, 258, 278, 332, 350, 384, 629
MboI	GATC	7 cut(s)	187, 256, 276, 330, 348, 382, 627
MboII	GAAGA	2 cut(s)	437, 542
MhlI	GDGCHC	3 cut(s)	99, 477, 623
MluCI	AATT	1 cut(s)	163
MlyI	GAGTC	4 cut(s)	302, 712, 733, 740
MmeI	TCCRAC	2 cut(s)	534, 629
MnlI	CCTC	8 cut(s)	47, 51, 57, 109, 156, 278, 550, 588
MroI	TCCGGA	3 cut(s)	114, 636, 727
MroNI	GCCGGC	2 cut(s)	307, 753
MroXI	GAANNNNTTC	1 cut(s)	453
MspR9I	CCNGG	4 cut(s)	215, 541, 625, 679
MvaI	CCWGG	2 cut(s)	215, 625
MvnI	CGCG	4 cut(s)	78, 269, 467, 751
MwoI	GCNNNNNNNGC	3 cut(s)	317, 440, 449
NaeI	GCCGGC	2 cut(s)	309, 755
NciI	CCSGG	2 cut(s)	541, 679
NdeII	GATC	7 cut(s)	187, 256, 276, 330, 348, 382, 627
NgoMIV	GCCGGC	2 cut(s)	307, 753
NlaIII	CATG	3 cut(s)	307, 343, 373
NlaIV	GGNNCC	3 cut(s)	97, 113, 676
NmuCI	GTSAC	3 cut(s)	667, 709, 763
PciSI	GCTCTTC	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PdiI	GCCGGC	2 cut(s)	309, 755
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	5 cut(s)	135, 513, 633, 640, 682
PfoI	TCCNGGA	1 cut(s)	677
PinAI	ACCGGT	2 cut(s)	671, 713
PkrI	GCNGC	2 cut(s)	204, 313
PleI	GAGTC	4 cut(s)	301, 711, 732, 739
PpsI	GAGTC	4 cut(s)	301, 711, 732, 739
Psp6I	CCWGG	2 cut(s)	213, 623
PspEI	GGTNACC	3 cut(s)	667, 709, 763
PspFI	CCCAGC	1 cut(s)	122
PspGI	CCWGG	2 cut(s)	213, 623
PspN4I	GGNNCC	3 cut(s)	97, 113, 676
PspOMI	GGGCCC	1 cut(s)	95
PspPI	GGNCC	4 cut(s)	95, 96, 112, 217
SapI	GCTCTTC	1 cut(s)	525
SatI	GCNGC	2 cut(s)	203, 312
Sau3AI	GATC	7 cut(s)	187, 256, 276, 330, 348, 382, 627
Sau96I	GGNCC	4 cut(s)	95, 96, 112, 217
SchI	GAGTC	4 cut(s)	302, 712, 733, 740
ScrFI	CCNGG	4 cut(s)	215, 541, 625, 679
SduI	GDGCHC	3 cut(s)	99, 477, 623
SetI	ASST	9 cut(s)	87, 417, 432, 480, 537, 611, 626, 784, 791
SfaNI	GCATC	2 cut(s)	218, 507
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	163
SsiI	CCGC	7 cut(s)	203, 311, 388, 443, 467, 569, 749
SspMI	CTAG	2 cut(s)	479, 510
StyD4I	CCNGG	4 cut(s)	213, 539, 623, 677
TaaI	ACNGT	2 cut(s)	155, 493
TaiI	ACGT	3 cut(s)	87, 432, 611
TaqI	TCGA	7 cut(s)	8, 15, 41, 73, 197, 471, 501
TaqII	GACCGA	3 cut(s)	91, 641, 683
TasI	AATT	1 cut(s)	163
TauI	GCSGC	2 cut(s)	205, 314
TfiI	GAWTC	5 cut(s)	135, 513, 633, 640, 682
TscAI	CASTG	1 cut(s)	765
TseFI	GTSAC	3 cut(s)	667, 709, 763
Tsp45I	GTSAC	3 cut(s)	667, 709, 763
TspRI	CASTG	1 cut(s)	765
VpaK11BI	GGWCC	1 cut(s)	112
XbaI	TCTAGA	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	2 cut(s)	479, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.