Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

35181787 .. 35195769

Gene Structure 13983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG303600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGAAGAGCTTGCCCGGTCAATCTGGTCGGAGGGATTGGTGGCAGGTCAAGTCATGGATATCCATTCCGAGGGGTTATCCAACGTGGGACTGGAGCACCTGGAGTACATACACATCAAAGCTCACCTTCTACCAGTGAGAACTCCATATGCTGCCGTAGCTACCAAGTTTCCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

59

Amino Acids

6.58

Weight (kDa)

6.01

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	3 cut(s)	10, 122, 161
AluI	AGCT	3 cut(s)	10, 122, 161
Alw21I	GWGCWC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	16, 101
BmrFI	CCNGG	2 cut(s)	16, 101
BpmI	CTGGAG	2 cut(s)	113, 122
BpuMI	CCSGG	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	96, 134
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseNI	ACTGG	2 cut(s)	96, 134
BseXI	GCAGC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	96, 134
BssECI	CCNNGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	14, 99
BstV1I	GCAGC	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	3 cut(s)	10, 122, 161
CviKI_1	RGCY	3 cut(s)	10, 122, 161
CviQI	GTAC	1 cut(s)	106
Eco32I	GATATC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	61
FaeI	CATG	1 cut(s)	58
FaiI	YATR	4 cut(s)	56, 110, 148, 150
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	153
GsuI	CTGGAG	2 cut(s)	113, 122
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	1 cut(s)	58
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	31, 70
HpyAV	CCTTC	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	7 cut(s)	10, 29, 30, 77, 86, 113, 147
Lsp1109I	GCAGC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	84
MboII	GAAGA	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	99
MmeI	TCCRAC	2 cut(s)	9, 105
MnlI	CCTC	2 cut(s)	25, 64
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	2 cut(s)	16, 101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	16
NdeI	CATATG	1 cut(s)	148
NlaIII	CATG	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	16, 101
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	7 cut(s)	12, 49, 87, 102, 124, 129, 163
StyD4I	CCNGG	2 cut(s)	14, 99
TaiI	ACGT	1 cut(s)	87
TatI	WGTACW	1 cut(s)	105
TscAI	CASTG	1 cut(s)	141
TseI	GCWGC	1 cut(s)	152
TspRI	CASTG	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.