Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002658.1

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1769

Gene Structure 1769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002658.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ttcaaagacctgacccatttccttcgcttctctgaaaggacgccgacccagttctgtcacggcaatcctgaccaagctggagactatgaaggagcagaaggaagagtaatccgagaagccagtttcaatttcaagaccgacatggtggagaaggccgagtccgtcaaccgggccttagacgccgccatttcgctgaaagacccgattacgatccacgaagagatgcggtactctttgctcgccggaggcaagaggagaggaggaccaagtcagattgatccagaacactcgagagagcatcagagctctctgacccgaactgcaactcgcgacccgaccggaaatcgcccatccagccatctctccgaggaggaccaccggaaaaagcttcgtctggccgtcgcctacgttcctatggtctcagattatacatgcagcgactgcgaacggagagcagacgacgagaagccccgacatgtctccggcaacctctgcaatttcaggcgactccggccaccgtttgggctgcctttgccatctctccgaggaggaccaccggaaaaagcttcgtctggccgtcgcctacattcctatggtctcatattatacatgcagcgactgcgaacggagagcagacgacgagaagccccgacctgtctccggcaacctctgcaatttccggctactccggccaccgtttgggctgcctttggtagggaacttcatcctctcgtcaagctctacatgtctgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

251

Amino Acids

28.49

Weight (kDa)

9.5

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	521, 699
AccII	CGCG	1 cut(s)	330
AciI	CCGC	2 cut(s)	183, 226
AclWI	GGATC	2 cut(s)	205, 272
AcoI	YGGCCR	4 cut(s)	396, 512, 574, 690
AcyI	GRCGYC	2 cut(s)	41, 180
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	5 cut(s)	168, 521, 660, 699, 714
AflIII	ACRYGT	2 cut(s)	475, 744
AgsI	TTSAA	3 cut(s)	4, 127, 133
AluBI	AGCT	5 cut(s)	77, 306, 388, 566, 739
AluI	AGCT	5 cut(s)	77, 306, 388, 566, 739
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	5 cut(s)	75, 424, 484, 602, 662
AlwI	GGATC	2 cut(s)	205, 272
AlwNI	CAGNNNCTG	2 cut(s)	441, 619
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	6 cut(s)	153, 171, 396, 512, 574, 690
ApeKI	GCWGC	4 cut(s)	435, 526, 613, 704
AspS9I	GGNCC	4 cut(s)	171, 263, 373, 551
AsuC2I	CCSGG	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	3 cut(s)	263, 373, 551
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	4 cut(s)	447, 513, 625, 691
BccI	CCATC	3 cut(s)	358, 366, 544
BceAI	ACGGC	3 cut(s)	76, 383, 561
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	5 cut(s)	75, 424, 484, 602, 662
BisI	GCNGC	5 cut(s)	183, 436, 527, 614, 705
BlsI	GCNGC	5 cut(s)	184, 437, 528, 615, 706
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	3 cut(s)	263, 373, 551
BmeT110I	CYCGRG	1 cut(s)	289
BmgT120I	GGNCC	4 cut(s)	171, 263, 373, 551
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	2 cut(s)	213, 307
BmuI	ACTGGG	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	209
BsaHI	GRCGYC	2 cut(s)	41, 180
BsaI	GGTCTC	2 cut(s)	424, 602
BsaJI	CCNNGG	2 cut(s)	366, 544
BsaWI	WCCGGW	3 cut(s)	338, 378, 556
Bsc4I	CCNNNNNNNGG	5 cut(s)	168, 521, 660, 699, 714
Bse1I	ACTGG	2 cut(s)	49, 120
Bse8I	GATNNNNATC	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	366, 544
BseGI	GGATG	2 cut(s)	350, 724
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	5 cut(s)	168, 521, 660, 699, 714
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	2 cut(s)	49, 120
BseRI	GAGGAG	4 cut(s)	268, 273, 383, 561
BseXI	GCAGC	4 cut(s)	447, 513, 625, 691
Bsh1236I	CGCG	1 cut(s)	330
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	6 cut(s)	155, 173, 398, 514, 576, 692
BsiEI	CGRYCG	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	289
BslI	CCNNNNNNNGG	5 cut(s)	168, 521, 660, 699, 714
BsmAI	GTCTC	5 cut(s)	75, 424, 484, 602, 662
BsnI	GGCC	6 cut(s)	155, 173, 398, 514, 576, 692
Bso31I	GGTCTC	2 cut(s)	424, 602
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	210, 277
Bsp68I	TCGCGA	1 cut(s)	330
BspACI	CCGC	2 cut(s)	183, 226
BspANI	GGCC	6 cut(s)	155, 173, 398, 514, 576, 692
BspCNI	CTCAG	1 cut(s)	434
BspFNI	CGCG	1 cut(s)	330
BspPI	GGATC	2 cut(s)	205, 272
BspTNI	GGTCTC	2 cut(s)	424, 602
BsrI	ACTGG	2 cut(s)	49, 120
BssECI	CCNNGG	2 cut(s)	366, 544
BssMI	GATC	2 cut(s)	210, 277
BssNI	GRCGYC	2 cut(s)	41, 180
Bst4CI	ACNGT	2 cut(s)	519, 697
Bst6I	CTCTTC	2 cut(s)	97, 213
BstACI	GRCGYC	2 cut(s)	41, 180
BstAPI	GCANNNNNTGC	4 cut(s)	441, 492, 619, 670
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	175, 421
BstENI	CCTNNNNNAGG	1 cut(s)	712
BstF5I	GGATG	2 cut(s)	350, 724
BstFNI	CGCG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	213, 280
BstMAI	GTCTC	5 cut(s)	75, 424, 484, 602, 662
BstMBI	GATC	2 cut(s)	210, 277
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	9 cut(s)	179, 354, 441, 492, 511, 532, 619, 670, 689
BstNSI	RCATGY	4 cut(s)	435, 479, 613, 748
BstSCI	CCNGG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	447, 513, 625, 691
BsuRI	GGCC	6 cut(s)	155, 173, 398, 514, 576, 692
BtsCI	GGATG	2 cut(s)	350, 724
BtuMI	TCGCGA	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	240
CaiI	CAGNNNCTG	2 cut(s)	441, 619
Cfr13I	GGNCC	4 cut(s)	171, 263, 373, 551
CseI	GACGC	2 cut(s)	49, 188
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	5 cut(s)	142, 432, 476, 610, 745
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	175, 421
DpnI	GATC	2 cut(s)	212, 279
DpnII	GATC	2 cut(s)	210, 277
EaeI	YGGCCR	4 cut(s)	396, 512, 574, 690
Eam1104I	CTCTTC	2 cut(s)	97, 213
EarI	CTCTTC	2 cut(s)	97, 213
Ecl136II	GAGCTC	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	308
Eco31I	GGTCTC	2 cut(s)	424, 602
Eco47I	GGWCC	3 cut(s)	263, 373, 551
Eco53kI	GAGCTC	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	5 cut(s)	145, 435, 479, 613, 748
FatI	CATG	5 cut(s)	141, 431, 475, 609, 744
Fnu4HI	GCNGC	5 cut(s)	183, 436, 527, 614, 705
FokI	GGATG	2 cut(s)	337, 711
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	5 cut(s)	183, 436, 527, 614, 705
GluI	GCNGC	5 cut(s)	183, 436, 527, 614, 705
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	6 cut(s)	155, 173, 398, 514, 576, 692
HgaI	GACGC	2 cut(s)	49, 188
Hin1I	GRCGYC	2 cut(s)	41, 180
Hin1II	CATG	5 cut(s)	145, 435, 479, 613, 748
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	2 cut(s)	386, 564
HinfI	GANTC	2 cut(s)	158, 507
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	8 cut(s)	34, 113, 273, 303, 312, 367, 424, 545
Hpy188III	TCNNGA	5 cut(s)	68, 133, 281, 291, 329
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	4 cut(s)	404, 464, 582, 642
HpyAV	CCTTC	4 cut(s)	32, 83, 92, 145
HpyCH4III	ACNGT	2 cut(s)	519, 697
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	5 cut(s)	323, 435, 495, 613, 673
HpyF10VI	GCNNNNNNNGC	9 cut(s)	179, 354, 441, 492, 511, 532, 619, 670, 689
HpyF3I	CTNAG	2 cut(s)	175, 421
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	2 cut(s)	41, 180
Hsp92II	CATG	5 cut(s)	145, 435, 479, 613, 748
Kzo9I	GATC	2 cut(s)	210, 277
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	4 cut(s)	447, 513, 625, 691
LweI	GCATC	2 cut(s)	213, 307
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	2 cut(s)	212, 279
MboI	GATC	2 cut(s)	210, 277
MboII	GAAGA	2 cut(s)	114, 230
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	3 cut(s)	127, 496, 674
MlyI	GAGTC	2 cut(s)	167, 501
MslI	CAYNNNNRTG	1 cut(s)	591
MspR9I	CCNGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	9 cut(s)	179, 354, 441, 492, 511, 532, 619, 670, 689
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	210, 277
NlaIII	CATG	5 cut(s)	145, 435, 479, 613, 748
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	56
NruI	TCGCGA	1 cut(s)	330
NspI	RCATGY	4 cut(s)	435, 479, 613, 748
PaeR7I	CTCGAG	1 cut(s)	289
PciI	ACATGT	2 cut(s)	475, 744
PflFI	GACNNNGTC	1 cut(s)	267
PflMI	CCANNNNNTGG	2 cut(s)	521, 699
PkrI	GCNGC	5 cut(s)	184, 437, 528, 615, 706
PleI	GAGTC	2 cut(s)	166, 501
PpsI	GAGTC	2 cut(s)	166, 501
PscI	ACATGT	2 cut(s)	475, 744
Psp124BI	GAGCTC	1 cut(s)	308
PspPI	GGNCC	4 cut(s)	171, 263, 373, 551
PstNI	CAGNNNCTG	2 cut(s)	441, 619
PsyI	GACNNNGTC	1 cut(s)	267
RruI	TCGCGA	1 cut(s)	330
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	591
SacI	GAGCTC	1 cut(s)	308
SatI	GCNGC	5 cut(s)	183, 436, 527, 614, 705
Sau3AI	GATC	2 cut(s)	210, 277
Sau96I	GGNCC	4 cut(s)	171, 263, 373, 551
SchI	GAGTC	2 cut(s)	167, 501
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	308
SfaNI	GCATC	2 cut(s)	213, 307
Sfr274I	CTCGAG	1 cut(s)	289
SinI	GGWCC	3 cut(s)	263, 373, 551
SlaI	CTCGAG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	3 cut(s)	127, 496, 674
SsiI	CCGC	2 cut(s)	183, 226
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	519, 697
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	290
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	3 cut(s)	127, 496, 674
TauI	GCSGC	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	4 cut(s)	435, 526, 613, 704
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	102, 713
TspGWI	ACGGA	3 cut(s)	151, 463, 641
Tth111I	GACNNNGTC	1 cut(s)	267
Van91I	CCANNNNNTGG	2 cut(s)	521, 699
VpaK11BI	GGWCC	3 cut(s)	263, 373, 551
XagI	CCTNNNNNAGG	1 cut(s)	712
XceI	RCATGY	4 cut(s)	435, 479, 613, 748
XhoI	CTCGAG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.