Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Reverse (-)

42014094 .. 42014480

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG322900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCGTTGATCCACAACAACTTGCCGTGCATGGATAACGACGACCTCCGTTGCAGGAATCCCACCAACCACAAGGTTTTCGGCGAAGATGTTGTCGTTTTGGCCGGCGACGCGCTTCTCTCCTTCGCGTTCGAGCACCATGCCATGTCCACCGTCGGCGTTGAGCCTTCTAGAATCGTCCGAGCCGTGGAAGAGCTTGCCCGATCAATATGGTCGGAGGGATTGGTGGCGGGTCAAGTCGTGGATATCCACTCCGAGGGGTTATCCAACGTGGGACTGGAGCACCTAGAGTACATACACATCTCAGCTCACCTTCTACCAGTGAGAACTCCATATGCTGCCGTAGCTACCAAGGTTCGAGGTTTCCCAGAAAGAACCGTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

128

Amino Acids

14.06

Weight (kDa)

5.68

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	2 - 99	8.8e-09	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	113, 128
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	102
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	187, 256
AluBI	AGCT	3 cut(s)	196, 308, 347
AluI	AGCT	3 cut(s)	196, 308, 347
Alw21I	GWGCWC	2 cut(s)	138, 285
AlwI	GGATC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspLEI	GCGC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	138, 285
BbvI	GCAGC	1 cut(s)	325
BceAI	ACGGC	3 cut(s)	10, 170, 326
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BfaI	CTAG	2 cut(s)	171, 287
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BpmI	CTGGAG	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	186, 255, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 256
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	282, 320
BseDI	CCNNGG	3 cut(s)	186, 255, 351
BseLI	CCNNNNNNNGG	2 cut(s)	187, 256
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	282, 320
BseXI	GCAGC	1 cut(s)	325
Bsh1236I	CGCG	2 cut(s)	113, 128
BshFI	GGCC	1 cut(s)	104
BsiHKAI	GWGCWC	2 cut(s)	138, 285
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	187, 256
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	138, 285
Bsp143I	GATC	2 cut(s)	9, 203
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	317
BspFNI	CGCG	2 cut(s)	113, 128
BspPI	GGATC	1 cut(s)	4
BspQI	GCTCTTC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	282, 320
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	3 cut(s)	186, 255, 351
BssMI	GATC	2 cut(s)	9, 203
BssT1I	CCWWGG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	154, 379
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	106, 198
BstDEI	CTNAG	1 cut(s)	304
BstDSI	CCRYGG	1 cut(s)	186
BstFNI	CGCG	2 cut(s)	113, 128
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	2 cut(s)	12, 206
BstMBI	GATC	2 cut(s)	9, 203
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 344
BstUI	CGCG	2 cut(s)	113, 128
BstV1I	GCAGC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	106, 198
CfoI	GCGC	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	104
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	31, 140, 145
CviJI	RGCY	6 cut(s)	104, 166, 185, 196, 308, 347
CviKI_1	RGCY	6 cut(s)	104, 166, 185, 196, 308, 347
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	2 cut(s)	11, 205
DpnII	GATC	2 cut(s)	9, 203
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	34, 143, 148
FaiI	YATR	7 cut(s)	32, 141, 146, 211, 296, 334, 336
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	3 cut(s)	30, 139, 144
FauI	CCCGC	1 cut(s)	223
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	171, 287
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	34, 143, 148
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	2 cut(s)	58, 174
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	3 cut(s)	182, 217, 256
Hpy188III	TCNNGA	1 cut(s)	171
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	3 cut(s)	44, 113, 158
HpyAV	CCTTC	3 cut(s)	133, 177, 323
HpyCH4III	ACNGT	2 cut(s)	154, 379
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	30, 54
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 344
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	34, 143, 148
HspAI	GCGC	1 cut(s)	113
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	9, 203
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	40, 118, 263, 333, 381
Lsp1109I	GCAGC	1 cut(s)	325
MaeI	CTAG	2 cut(s)	171, 287
MaeII	ACGT	1 cut(s)	270
MalI	GATC	2 cut(s)	11, 205
MboI	GATC	2 cut(s)	9, 203
MboII	GAAGA	2 cut(s)	98, 203
MhlI	GDGCHC	2 cut(s)	138, 285
MmeI	TCCRAC	2 cut(s)	195, 291
MnlI	CCTC	4 cut(s)	56, 211, 250, 353
MroNI	GCCGGC	1 cut(s)	104
MspI	CCGG	1 cut(s)	105
MvnI	CGCG	2 cut(s)	113, 128
MwoI	GCNNNNNNNGC	2 cut(s)	110, 344
NaeI	GCCGGC	1 cut(s)	106
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	2 cut(s)	9, 203
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	34, 143, 148
PciSI	GCTCTTC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	58, 174
PkrI	GCNGC	1 cut(s)	340
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	186
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	2 cut(s)	9, 203
SduI	GDGCHC	2 cut(s)	138, 285
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	2 cut(s)	171, 287
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	154, 379
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	132, 358
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	58, 174
TscAI	CASTG	1 cut(s)	327
TseI	GCWGC	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	327
XbaI	TCTAGA	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	2 cut(s)	171, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.