Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Reverse (-)

45317171 .. 45317530

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCCGGCGGCCTGCGCCGTCAAGATGATCCACACCATGTTGTTGATCCACGACGACTTGCCGTGCATGGATAATGACGATCTCCGCCGCGGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGACGTTGCGGTTTTGGCGGGCGAAGCGCTTCTCTCCTTCGCGGTCGAGCACCTAGCCTTGTCCACCGTCGGCATCGAGCCTTCTAGAATCATCCGAGCCGTGGAAGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTAGCGGGTCAAGTCGTGGATATCCACTCGAGGGGTTATCCGACGTGGGACCGGAGCACTGGAGTACATACACCTCCACAAAATTGTAGCTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

119

Amino Acids

12.8

Weight (kDa)

5.57

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	3 - 98	4.8e-20	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	90, 164
AciI	CCGC	8 cut(s)	8, 85, 88, 90, 131, 140, 164, 266
AclWI	GGATC	2 cut(s)	22, 40
AfaI	GTAC	1 cut(s)	327
AfeI	AGCGCT	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	223, 292
AjiI	CACGTC	1 cut(s)	306
AluBI	AGCT	2 cut(s)	232, 351
AluI	AGCT	2 cut(s)	232, 351
Alw21I	GWGCWC	2 cut(s)	174, 320
AlwI	GGATC	2 cut(s)	22, 40
Ama87I	CYCGRG	1 cut(s)	289
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	1 cut(s)	9
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	17, 151
AspS9I	GGNCC	1 cut(s)	310
AsuC2I	CCSGG	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	2 cut(s)	174, 320
BceAI	ACGGC	3 cut(s)	2, 46, 206
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BcnI	CCSGG	1 cut(s)	238
BfaI	CTAG	2 cut(s)	176, 207
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	2 cut(s)	9, 88
BlsI	GCNGC	2 cut(s)	10, 89
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	289
BmgBI	CACGTC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	88, 222
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 292
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	88, 222
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	223, 292
BseNI	ACTGG	1 cut(s)	325
Bsh1236I	CGCG	2 cut(s)	90, 164
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	2 cut(s)	174, 320
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	3 cut(s)	5, 238, 313
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	223, 292
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	174, 320
Bsp143I	GATC	3 cut(s)	27, 45, 79
BspACI	CCGC	8 cut(s)	8, 85, 88, 90, 131, 140, 164, 266
BspANI	GGCC	1 cut(s)	11
BspFNI	CGCG	2 cut(s)	90, 164
BspLI	GGNNCC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	22, 40
BspQI	GCTCTTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	88, 222
BssMI	GATC	3 cut(s)	27, 45, 79
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	4 cut(s)	6, 13, 142, 234
BstDSI	CCRYGG	2 cut(s)	88, 222
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	2 cut(s)	90, 164
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	17, 151
BstKTI	GATC	3 cut(s)	30, 48, 82
BstMBI	GATC	3 cut(s)	27, 45, 79
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 137, 146
BstSCI	CCNGG	1 cut(s)	236
BstUI	CGCG	2 cut(s)	90, 164
BstV2I	GAAGAC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	11
BtgI	CCRYGG	2 cut(s)	88, 222
BtrI	CACGTC	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	4 cut(s)	6, 13, 142, 234
CfoI	GCGC	2 cut(s)	17, 151
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	310
Cfr42I	CCGCGG	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	2 cut(s)	37, 67
CviJI	RGCY	7 cut(s)	11, 97, 179, 202, 221, 232, 351
CviKI_1	RGCY	7 cut(s)	11, 97, 179, 202, 221, 232, 351
CviQI	GTAC	1 cut(s)	326
DpnI	GATC	3 cut(s)	29, 47, 81
DpnII	GATC	3 cut(s)	27, 45, 79
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	310
Eco47III	AGCGCT	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	283
FaeI	CATG	2 cut(s)	40, 70
FaiI	YATR	3 cut(s)	38, 68, 330
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	2 cut(s)	36, 66
FauI	CCCGC	3 cut(s)	83, 133, 259
Fnu4HI	GCNGC	2 cut(s)	9, 88
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	9, 88
FspBI	CTAG	2 cut(s)	176, 207
GlaI	GCGC	2 cut(s)	16, 150
GluI	GCNGC	2 cut(s)	9, 88
GsuI	CTGGAG	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	3 cut(s)	5, 238, 313
HhaI	GCGC	2 cut(s)	17, 151
Hin1II	CATG	2 cut(s)	40, 70
Hin6I	GCGC	2 cut(s)	15, 149
HinP1I	GCGC	2 cut(s)	15, 149
HinfI	GANTC	1 cut(s)	210
HpaII	CCGG	3 cut(s)	5, 238, 313
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	218, 253, 303
Hpy188III	TCNNGA	3 cut(s)	22, 207, 357
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	3 cut(s)	56, 194, 307
HpyAV	CCTTC	2 cut(s)	169, 213
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	2 cut(s)	126, 305
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 137, 146
HpySE526I	ACGT	2 cut(s)	126, 305
Hsp92II	CATG	2 cut(s)	40, 70
HspAI	GCGC	2 cut(s)	15, 149
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	27, 45, 79
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	5 cut(s)	18, 25, 251, 306, 326
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	2 cut(s)	176, 207
MaeII	ACGT	2 cut(s)	126, 305
MalI	GATC	3 cut(s)	29, 47, 81
MboI	GATC	3 cut(s)	27, 45, 79
MboII	GAAGA	3 cut(s)	134, 239, 345
MhlI	GDGCHC	2 cut(s)	174, 320
MluCI	AATT	1 cut(s)	343
MmeI	TCCRAC	2 cut(s)	231, 326
MnlI	CCTC	3 cut(s)	247, 285, 345
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	3 cut(s)	5, 238, 313
MspR9I	CCNGG	1 cut(s)	238
MvnI	CGCG	2 cut(s)	90, 164
MwoI	GCNNNNNNNGC	3 cut(s)	14, 137, 146
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	3 cut(s)	27, 45, 79
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	40, 70
NlaIV	GGNNCC	1 cut(s)	311
PaeR7I	CTCGAG	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	10, 89
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	310
PspXI	VCTCGAGB	1 cut(s)	289
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SacII	CCGCGG	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	222
SatI	GCNGC	2 cut(s)	9, 88
Sau3AI	GATC	3 cut(s)	27, 45, 79
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	174, 320
SetI	ASST	7 cut(s)	114, 129, 177, 234, 308, 337, 353
SfaNI	GCATC	1 cut(s)	204
Sfr274I	CTCGAG	1 cut(s)	289
Sfr303I	CCGCGG	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	310
SlaI	CTCGAG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	8 cut(s)	8, 85, 88, 90, 131, 140, 164, 266
SspMI	CTAG	2 cut(s)	176, 207
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	2 cut(s)	129, 308
TaqI	TCGA	3 cut(s)	168, 198, 290
TasI	AATT	1 cut(s)	343
TatI	WGTACW	1 cut(s)	325
TauI	GCSGC	2 cut(s)	11, 90
TfiI	GAWTC	1 cut(s)	210
TscAI	CASTG	1 cut(s)	325
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	310
XbaI	TCTAGA	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	2 cut(s)	176, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.