Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Reverse (-)

13921303 .. 13923088

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022876

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCGGTACTCTTTGCTCGCCGGAGGCAAGAGGGTCCGACCCATTCTATGTGTCGCGGCGTGCGAGCTCGTCAGAGGGTCTGAGTTCGTCACCGTGCTGGCCACCTGCGCCGTCAAGATGATCCACACCATGTCGTTGATCCACGACGACTTGACGTGCATGGATAACGACGACCTCCGCCCCGGGAAGCCCACCAACCACAAGGTTTTCGGTGAAGAAGTTGCCGTTTTGGCCTGCGACGAGCTTCTCTCCTTCTCGTTCGAGCACCTAGCCTTATCCACTGTCGGCGTCGAGCCTTCTAGAATCGTCCAAGCCGTGGAAGAGCTTGCCCGGTCACTCGGGTCGGAGGGATTGGTGGCGGGTCAAGTCGTGGATATCCACTCCGAGGGGTTATCCGACGTGGGACTGGAGCACCTGGAGTACAAACACCTCCCCAAAACTGTAGCTCTTCATGAATGTGCAGTTGTTCTTGGTGTTGGCGTATTGCAACTCTCCCGCTTGTATTGCACACGAAACTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

175

Amino Acids

18.86

Weight (kDa)

5.56

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	2 - 161	5.8e-27	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccII	CGCG	1 cut(s)	56
AciI	CCGC	5 cut(s)	4, 56, 178, 359, 496
AclWI	GGATC	2 cut(s)	115, 133
AcoI	YGGCCR	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	2 cut(s)	8, 422
AfiI	CCNNNNNNNGG	2 cut(s)	316, 385
AjiI	CACGTC	2 cut(s)	156, 400
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	4 cut(s)	67, 244, 325, 446
AluI	AGCT	4 cut(s)	67, 244, 325, 446
Alw21I	GWGCWC	3 cut(s)	69, 267, 414
AlwI	GGATC	2 cut(s)	115, 133
Ama87I	CYCGRG	2 cut(s)	182, 338
AoxI	GGCC	2 cut(s)	99, 231
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	3 cut(s)	183, 184, 331
AsuHPI	GGTGA	2 cut(s)	82, 224
AvaI	CYCGRG	2 cut(s)	182, 338
AvaII	GGWCC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	3 cut(s)	69, 267, 414
BceAI	ACGGC	3 cut(s)	95, 209, 299
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	3 cut(s)	183, 184, 331
BfaI	CTAG	2 cut(s)	269, 300
BfmI	CTRYAG	1 cut(s)	441
BfuAI	ACCTGC	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	4 cut(s)	183, 184, 331, 416
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	2 cut(s)	182, 338
BmgBI	CACGTC	2 cut(s)	156, 400
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	4 cut(s)	183, 184, 331, 416
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	2 cut(s)	428, 437
BpuMI	CCSGG	3 cut(s)	183, 184, 331
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	4 cut(s)	181, 182, 315, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 385
Bse1I	ACTGG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	4 cut(s)	181, 182, 315, 384
BseLI	CCNNNNNNNGG	2 cut(s)	316, 385
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	411
BsgI	GTGCAG	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	101, 233
BsiHKAI	GWGCWC	3 cut(s)	69, 267, 414
BsiHKCI	CYCGRG	2 cut(s)	182, 338
BsiSI	CCGG	3 cut(s)	21, 183, 331
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	2 cut(s)	316, 385
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	101, 233
BsoBI	CYCGRG	2 cut(s)	182, 338
Bsp1286I	GDGCHC	3 cut(s)	69, 267, 414
Bsp143I	GATC	2 cut(s)	120, 138
BspACI	CCGC	5 cut(s)	4, 56, 178, 359, 496
BspANI	GGCC	2 cut(s)	101, 233
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	115, 133
BspQI	GCTCTTC	2 cut(s)	315, 453
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	4 cut(s)	181, 182, 315, 384
BssMI	GATC	2 cut(s)	120, 138
BssNI	GRCGYC	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	3 cut(s)	94, 283, 442
Bst6I	CTCTTC	2 cut(s)	315, 453
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	6 cut(s)	18, 61, 65, 99, 235, 327
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	315
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	123, 141
BstMBI	GATC	2 cut(s)	120, 138
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 230, 504
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	4 cut(s)	181, 182, 329, 414
BstSFI	CTRYAG	1 cut(s)	441
BstUI	CGCG	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	101, 233
BtgI	CCRYGG	1 cut(s)	315
BtrI	CACGTC	2 cut(s)	156, 400
BtsIMutI	CAGTG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	6 cut(s)	18, 61, 65, 99, 235, 327
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	34
Cfr9I	CCCGGG	1 cut(s)	182
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	7, 421
CviAII	CATG	3 cut(s)	130, 160, 452
CviQI	GTAC	2 cut(s)	7, 421
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	122, 140
DpnII	GATC	2 cut(s)	120, 138
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	315, 453
EarI	CTCTTC	2 cut(s)	315, 453
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	67
Eco88I	CYCGRG	2 cut(s)	182, 338
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	414
EcoRV	GATATC	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	3 cut(s)	133, 163, 455
FaiI	YATR	4 cut(s)	49, 131, 161, 453
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	3 cut(s)	129, 159, 451
FauI	CCCGC	2 cut(s)	352, 503
Fnu4HI	GCNGC	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	2 cut(s)	269, 300
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	2 cut(s)	428, 437
HaeIII	GGCC	2 cut(s)	101, 233
HapII	CCGG	3 cut(s)	21, 183, 331
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	133, 163, 455
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	303
HpaII	CCGG	3 cut(s)	21, 183, 331
HphI	GGTGA	2 cut(s)	82, 224
Hpy188I	TCNGA	6 cut(s)	38, 74, 82, 346, 385, 397
Hpy188III	TCNNGA	3 cut(s)	115, 300, 452
Hpy99I	CGWCG	5 cut(s)	149, 173, 242, 293, 401
HpyAV	CCTTC	2 cut(s)	262, 306
HpyCH4III	ACNGT	3 cut(s)	94, 283, 442
HpyCH4IV	ACGT	2 cut(s)	155, 399
HpyCH4V	TGCA	4 cut(s)	159, 461, 487, 507
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 230, 504
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	2 cut(s)	155, 399
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	133, 163, 455
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	120, 138
LguI	GCTCTTC	2 cut(s)	315, 453
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	9 cut(s)	34, 83, 118, 196, 247, 344, 392, 401, 428
MaeI	CTAG	2 cut(s)	269, 300
MaeII	ACGT	2 cut(s)	155, 399
MaeIII	GTNAC	2 cut(s)	88, 333
MalI	GATC	2 cut(s)	122, 140
MboI	GATC	2 cut(s)	120, 138
MboII	GAAGA	3 cut(s)	227, 332, 440
MhlI	GDGCHC	3 cut(s)	69, 267, 414
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MmeI	TCCRAC	3 cut(s)	61, 324, 420
MnlI	CCTC	7 cut(s)	17, 24, 68, 185, 340, 379, 440
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	456
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	3 cut(s)	21, 183, 331
MspR9I	CCNGG	4 cut(s)	183, 184, 331, 416
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	107, 230, 504
NciI	CCSGG	3 cut(s)	183, 184, 331
NdeII	GATC	2 cut(s)	120, 138
NlaIII	CATG	3 cut(s)	133, 163, 455
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	88, 333
PagI	TCATGA	1 cut(s)	451
PaqCI	CACCTGC	1 cut(s)	113
PciSI	GCTCTTC	2 cut(s)	315, 453
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 312
PfeI	GAWTC	1 cut(s)	303
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	34
RsaI	GTAC	2 cut(s)	8, 422
RsaNI	GTAC	2 cut(s)	7, 421
RseI	CAYNNNNRTG	1 cut(s)	456
SacI	GAGCTC	1 cut(s)	69
SapI	GCTCTTC	2 cut(s)	315, 453
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	120, 138
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	4 cut(s)	183, 184, 331, 416
SduI	GDGCHC	3 cut(s)	69, 267, 414
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	34
SmaI	CCCGGG	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	456
SsiI	CCGC	5 cut(s)	4, 56, 178, 359, 496
SspMI	CTAG	2 cut(s)	269, 300
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	4 cut(s)	181, 182, 329, 414
TaaI	ACNGT	3 cut(s)	94, 283, 442
TaiI	ACGT	2 cut(s)	158, 402
TaqI	TCGA	2 cut(s)	261, 291
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	303
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	2 cut(s)	88, 333
Tsp45I	GTSAC	2 cut(s)	88, 333
TspDTI	ATGAA	2 cut(s)	440, 468
TspMI	CCCGGG	1 cut(s)	182
TspRI	CASTG	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	299
XmaI	CCCGGG	1 cut(s)	182
XspI	CTAG	2 cut(s)	269, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.