Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Reverse (-)

38627175 .. 38627762

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G017120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCCAGAAATCAAACTCCAGATTAGAACTCGACGCCGCCATCTCACCAGGGCCTTAGACGCCGCCATTTCGCTGAAAGACCCGATTACGATCCACGAAGCGATGCGAGGGTCTGAGTCAGTCACCATGCTGGCGGCCTGCGCCGTCAAGATGATCCACACCAAGTTGTTGATCCACGACGACTTGCCGTGCATGGATAATGACGATCTCCGCTGCGGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGACGTTGCAGTTTTGGCCGGCGAAGCGCTTCTCTCCTTCGCGGTCGAGCACCTAGCCTTGTCCACCGTCGGCATCGAGCCTTCTAGAATCGTCCGAGCAGTGGAAGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTAGCGGGTCAAGTCGTGGATATCCACTCTGAGGGGTTATCTGACGTGGGACTGGAGAACATGGAGTACATACACCTCCACAAAATTGTAGCTCTTCTTGAATGTAAGAAGAAGATAAAAAGGAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

172

Amino Acids

18.91

Weight (kDa)

6.75

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	42 - 157	1.9e-18	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	290
AciI	CCGC	7 cut(s)	37, 63, 134, 211, 216, 290, 392
AclWI	GGATC	3 cut(s)	85, 148, 166
AcoI	YGGCCR	1 cut(s)	264
AcyI	GRCGYC	2 cut(s)	34, 60
AfaI	GTAC	1 cut(s)	455
AfeI	AGCGCT	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	349, 418
AgsI	TTSAA	1 cut(s)	488
AjiI	CACGTC	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	2 cut(s)	358, 479
AluI	AGCT	2 cut(s)	358, 479
Alw21I	GWGCWC	1 cut(s)	300
AlwI	GGATC	3 cut(s)	85, 148, 166
Aor51HI	AGCGCT	1 cut(s)	276
AoxI	GGCC	3 cut(s)	51, 135, 264
ApeKI	GCWGC	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	2 cut(s)	143, 277
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	2 cut(s)	37, 115
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	2 cut(s)	128, 172
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	364
BfaI	CTAG	2 cut(s)	302, 333
BfoI	RGCGCY	1 cut(s)	278
BisI	GCNGC	4 cut(s)	37, 63, 135, 214
BlsI	GCNGC	4 cut(s)	38, 64, 136, 215
Bme1390I	CCNGG	2 cut(s)	49, 364
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	49, 364
BmsI	GCATC	2 cut(s)	93, 330
BpiI	GAAGAC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	364
BsaBI	GATNNNNATC	1 cut(s)	89
BsaHI	GRCGYC	2 cut(s)	34, 60
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 418
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	349, 418
BseMII	CTCAG	2 cut(s)	105, 408
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	53, 137, 266
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	267, 364
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	349, 418
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	3 cut(s)	53, 137, 266
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	90, 153, 171, 205
BspACI	CCGC	7 cut(s)	37, 63, 134, 211, 216, 290, 392
BspANI	GGCC	3 cut(s)	53, 137, 266
BspCNI	CTCAG	2 cut(s)	106, 409
BspFNI	CGCG	1 cut(s)	290
BspPI	GGATC	3 cut(s)	85, 148, 166
BspQI	GCTCTTC	2 cut(s)	348, 486
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	444
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	4 cut(s)	90, 153, 171, 205
BssNI	GRCGYC	2 cut(s)	34, 60
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	2 cut(s)	348, 486
BstACI	GRCGYC	2 cut(s)	34, 60
BstC8I	GCNNGC	4 cut(s)	132, 139, 268, 360
BstDEI	CTNAG	3 cut(s)	55, 114, 417
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	143, 277
BstKTI	GATC	4 cut(s)	93, 156, 174, 208
BstMBI	GATC	4 cut(s)	90, 153, 171, 205
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 140, 263, 272
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	47, 362
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	53, 137, 266
BtgZI	GCGATG	1 cut(s)	116
BtrI	CACGTC	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	4 cut(s)	132, 139, 268, 360
CfoI	GCGC	2 cut(s)	143, 277
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	51
CseI	GACGC	2 cut(s)	42, 68
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	3 cut(s)	127, 193, 448
CviJI	RGCY	9 cut(s)	53, 137, 223, 266, 305, 328, 358, 479, 515
CviKI_1	RGCY	9 cut(s)	53, 137, 223, 266, 305, 328, 358, 479, 515
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	3 cut(s)	55, 114, 417
DpnI	GATC	4 cut(s)	92, 155, 173, 207
DpnII	GATC	4 cut(s)	90, 153, 171, 205
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	348, 486
EarI	CTCTTC	2 cut(s)	348, 486
Eco32I	GATATC	1 cut(s)	409
Eco47III	AGCGCT	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	47
EcoRV	GATATC	1 cut(s)	409
FaeI	CATG	3 cut(s)	130, 196, 451
FaiI	YATR	4 cut(s)	128, 194, 449, 458
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	3 cut(s)	126, 192, 447
FauI	CCCGC	2 cut(s)	209, 385
Fnu4HI	GCNGC	4 cut(s)	37, 63, 135, 214
Fsp4HI	GCNGC	4 cut(s)	37, 63, 135, 214
FspBI	CTAG	2 cut(s)	302, 333
GlaI	GCGC	2 cut(s)	142, 276
GluI	GCNGC	4 cut(s)	37, 63, 135, 214
GsuI	CTGGAG	1 cut(s)	461
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	53, 137, 266
HapII	CCGG	2 cut(s)	267, 364
HgaI	GACGC	2 cut(s)	42, 68
HhaI	GCGC	2 cut(s)	143, 277
Hin1I	GRCGYC	2 cut(s)	34, 60
Hin1II	CATG	3 cut(s)	130, 196, 451
Hin6I	GCGC	2 cut(s)	141, 275
HinP1I	GCGC	2 cut(s)	141, 275
HinfI	GANTC	2 cut(s)	116, 336
HpaII	CCGG	2 cut(s)	267, 364
HphI	GGTGA	2 cut(s)	37, 115
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	5 cut(s)	115, 344, 379, 418, 430
Hpy188III	TCNNGA	4 cut(s)	19, 148, 333, 485
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	3 cut(s)	36, 182, 320
HpyAV	CCTTC	2 cut(s)	295, 339
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	2 cut(s)	252, 432
HpyCH4V	TGCA	2 cut(s)	192, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 140, 263, 272
HpyF3I	CTNAG	3 cut(s)	55, 114, 417
HpySE526I	ACGT	2 cut(s)	252, 432
Hsp92I	GRCGYC	2 cut(s)	34, 60
Hsp92II	CATG	3 cut(s)	130, 196, 451
HspAI	GCGC	2 cut(s)	141, 275
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	90, 153, 171, 205
LguI	GCTCTTC	2 cut(s)	348, 486
LpnPI	CCDG	9 cut(s)	18, 32, 34, 61, 116, 151, 280, 377, 425
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	2 cut(s)	93, 330
MaeI	CTAG	2 cut(s)	302, 333
MaeII	ACGT	2 cut(s)	252, 432
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	4 cut(s)	92, 155, 173, 207
MboI	GATC	4 cut(s)	90, 153, 171, 205
MboII	GAAGA	5 cut(s)	260, 365, 473, 508, 511
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	4 cut(s)	101, 373, 412, 473
MroNI	GCCGGC	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	2 cut(s)	267, 364
MspR9I	CCNGG	2 cut(s)	49, 364
MvaI	CCWGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	59, 140, 263, 272
NaeI	GCCGGC	1 cut(s)	268
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	4 cut(s)	90, 153, 171, 205
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	3 cut(s)	130, 196, 451
NmuCI	GTSAC	1 cut(s)	121
PciSI	GCTCTTC	2 cut(s)	348, 486
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	336
PkrI	GCNGC	4 cut(s)	38, 64, 136, 215
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	51
PsrI	GAACNNNNNNTAC	2 cut(s)	437, 469
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SapI	GCTCTTC	2 cut(s)	348, 486
SatI	GCNGC	4 cut(s)	37, 63, 135, 214
Sau3AI	GATC	4 cut(s)	90, 153, 171, 205
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	49, 364
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	7 cut(s)	240, 255, 303, 360, 435, 465, 481
SfaNI	GCATC	2 cut(s)	93, 330
Sse9I	AATT	1 cut(s)	471
SsiI	CCGC	7 cut(s)	37, 63, 134, 211, 216, 290, 392
SspMI	CTAG	2 cut(s)	302, 333
StyD4I	CCNGG	2 cut(s)	47, 362
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	2 cut(s)	255, 435
TaqI	TCGA	3 cut(s)	31, 294, 324
TasI	AATT	1 cut(s)	471
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	3 cut(s)	39, 65, 137
TfiI	GAWTC	1 cut(s)	336
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	121
TspRI	CASTG	1 cut(s)	354
XbaI	TCTAGA	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	2 cut(s)	302, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.