Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005135.1

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

624 .. 2364

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005135.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ctgaccaagcaggagactgtgaaggagcataaggaagaggaatccgggaagcccagtttcaatttcaagaccgatatggtggagaaggccgaatccatctacctggccttagacgccgccgtttcgctgaaagacccgattacgatccacgaagcgatgcggtactctttgctcgctggaggcaagagggtccgacccgttctgtgtgtcgcagcgtgccagctcgtcagagggtctgagtccgtcgccatgctggcggcctgcgctgtcaagatgatccacaccatgtcgttgatccatgacgacttgacgtgcatggataacgacgaactctaccgcgggaagcccaccaaccacaaggttttcggcgaagatgttaccgttttggcaggtgatgagcttttctcctttgcgtttgagcacctagccttgtccaccgtcggcgtcgagccttctagaatcgtccgagccgtggaagagcttgcccggtcaatcgggtcggagggattggtggcaggtcaagtcgtggatacccactccgaggggttatccgacgtgggactggagtacaaacacctctacaaaactgtagctcttcatgaatgtgcagttgttctcggtgttggcgtattgcaactctcccgtccggtagccggattccagattccagtgaccgatcgccggattccggtcacaggagcacgcagccggccactggtcaccggagtccgccaaggtcttctatcacttctctctctaagtgacaaagaaggagggccaaaattgtcccaaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

265

Amino Acids

28.68

Weight (kDa)

6.16

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	380
Acc36I	ACCTGC	2 cut(s)	380, 506
AccII	CGCG	1 cut(s)	339
AciI	CCGC	6 cut(s)	117, 160, 257, 337, 339, 730
AclWI	GGATC	3 cut(s)	139, 271, 289
AcoI	YGGCCR	1 cut(s)	710
AcyI	GRCGYC	2 cut(s)	114, 444
AfaI	GTAC	2 cut(s)	164, 569
AfiI	CCNNNNNNNGG	7 cut(s)	472, 541, 653, 681, 688, 695, 715
AgsI	TTSAA	2 cut(s)	61, 67
AjiI	CACGTC	2 cut(s)	312, 556
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	4 cut(s)	223, 400, 481, 593
AluI	AGCT	4 cut(s)	223, 400, 481, 593
Alw21I	GWGCWC	2 cut(s)	423, 703
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	3 cut(s)	139, 271, 289
AoxI	GGCC	5 cut(s)	87, 105, 258, 710, 776
ApeKI	GCWGC	2 cut(s)	212, 705
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	190, 776
AsuC2I	CCSGG	2 cut(s)	46, 487
AsuHPI	GGTGA	2 cut(s)	404, 712
AvaII	GGWCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	2 cut(s)	423, 703
BbvI	GCAGC	2 cut(s)	224, 717
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	2 cut(s)	104, 455
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	523
BcnI	CCSGG	2 cut(s)	46, 487
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	2 cut(s)	425, 456
BfmI	CTRYAG	1 cut(s)	588
BfuAI	ACCTGC	2 cut(s)	380, 506
BfuI	GTATCC	1 cut(s)	523
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	117, 213, 258, 706
BlsI	GCNGC	4 cut(s)	118, 214, 259, 707
Bme1390I	CCNGG	3 cut(s)	46, 104, 487
Bme18I	GGWCC	1 cut(s)	190
BmgBI	CACGTC	2 cut(s)	312, 556
BmgT120I	GGNCC	2 cut(s)	190, 776
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	3 cut(s)	46, 104, 487
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	731
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	2 cut(s)	198, 584
BpuMI	CCSGG	2 cut(s)	46, 487
BsaBI	GATNNNNATC	1 cut(s)	143
BsaHI	GRCGYC	2 cut(s)	114, 444
BsaJI	CCNNGG	4 cut(s)	337, 471, 540, 733
BsaWI	WCCGGW	3 cut(s)	646, 688, 722
Bsc4I	CCNNNNNNNGG	7 cut(s)	472, 541, 653, 681, 688, 695, 715
Bse118I	RCCGGY	1 cut(s)	708
Bse1I	ACTGG	4 cut(s)	54, 567, 668, 720
Bse8I	GATNNNNATC	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	4 cut(s)	337, 471, 540, 733
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	7 cut(s)	472, 541, 653, 681, 688, 695, 715
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	4 cut(s)	54, 567, 668, 720
BseXI	GCAGC	2 cut(s)	224, 717
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	679
BshFI	GGCC	5 cut(s)	89, 107, 260, 712, 778
BsiEI	CGRYCG	1 cut(s)	679
BsiHKAI	GWGCWC	2 cut(s)	423, 703
BsiSI	CCGG	8 cut(s)	45, 487, 647, 654, 682, 689, 709, 723
BslFI	GGGAC	2 cut(s)	573, 772
BslI	CCNNNNNNNGG	7 cut(s)	472, 541, 653, 681, 688, 695, 715
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	2 cut(s)	573, 772
BsnI	GGCC	5 cut(s)	89, 107, 260, 712, 778
Bsp1286I	GDGCHC	2 cut(s)	423, 703
Bsp143I	GATC	4 cut(s)	144, 276, 294, 676
BspACI	CCGC	6 cut(s)	117, 160, 257, 337, 339, 730
BspANI	GGCC	5 cut(s)	89, 107, 260, 712, 778
BspCNI	CTCAG	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	191
BspMI	ACCTGC	2 cut(s)	380, 506
BspPI	GGATC	3 cut(s)	139, 271, 289
BspQI	GCTCTTC	2 cut(s)	471, 600
BsrFI	RCCGGY	1 cut(s)	708
BsrI	ACTGG	4 cut(s)	54, 567, 668, 720
BssAI	RCCGGY	1 cut(s)	708
BssECI	CCNNGG	4 cut(s)	337, 471, 540, 733
BssMI	GATC	4 cut(s)	144, 276, 294, 676
BssNI	GRCGYC	2 cut(s)	114, 444
BssT1I	CCWWGG	1 cut(s)	733
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	4 cut(s)	19, 382, 439, 589
Bst6I	CTCTTC	3 cut(s)	30, 471, 600
BstACI	GRCGYC	2 cut(s)	114, 444
BstC8I	GCNNGC	8 cut(s)	174, 217, 221, 255, 262, 483, 703, 710
BstDEI	CTNAG	3 cut(s)	109, 237, 758
BstDSI	CCRYGG	2 cut(s)	337, 471
BstEII	GGTNACC	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	4 cut(s)	147, 279, 297, 679
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	4 cut(s)	144, 276, 294, 676
BstMCI	CGRYCG	1 cut(s)	679
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 254, 263
BstNI	CCWGG	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	718
BstSCI	CCNGG	3 cut(s)	44, 102, 485
BstSFI	CTRYAG	1 cut(s)	588
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	224, 717
BstV2I	GAAGAC	1 cut(s)	731
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	523
BsuRI	GGCC	5 cut(s)	89, 107, 260, 712, 778
BtgI	CCRYGG	2 cut(s)	337, 471
BtgZI	GCGATG	1 cut(s)	170
BtrI	CACGTC	2 cut(s)	312, 556
BtsIMutI	CAGTG	2 cut(s)	675, 713
BveI	ACCTGC	2 cut(s)	380, 506
Cac8I	GCNNGC	8 cut(s)	174, 217, 221, 255, 262, 483, 703, 710
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	708
Cfr13I	GGNCC	2 cut(s)	190, 776
Cfr42I	CCGCGG	1 cut(s)	340
CseI	GACGC	2 cut(s)	122, 433
Csp6I	GTAC	2 cut(s)	163, 568
CviAII	CATG	5 cut(s)	250, 286, 299, 316, 599
CviQI	GTAC	2 cut(s)	163, 568
DdeI	CTNAG	3 cut(s)	109, 237, 758
DpnI	GATC	4 cut(s)	146, 278, 296, 678
DpnII	GATC	4 cut(s)	144, 276, 294, 676
EaeI	YGGCCR	1 cut(s)	710
Eam1104I	CTCTTC	3 cut(s)	30, 471, 600
EarI	CTCTTC	3 cut(s)	30, 471, 600
EciI	GGCGGA	1 cut(s)	719
Eco130I	CCWWGG	1 cut(s)	733
Eco47I	GGWCC	1 cut(s)	190
Eco91I	GGTNACC	1 cut(s)	718
EcoO65I	GGTNACC	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	733
ErhI	CCWWGG	1 cut(s)	733
FaeI	CATG	5 cut(s)	253, 289, 302, 319, 602
FaiI	YATR	7 cut(s)	30, 77, 251, 287, 300, 317, 600
FaqI	GGGAC	2 cut(s)	573, 772
FatI	CATG	5 cut(s)	249, 285, 298, 315, 598
FauI	CCCGC	1 cut(s)	332
Fnu4HI	GCNGC	4 cut(s)	117, 213, 258, 706
Fsp4HI	GCNGC	4 cut(s)	117, 213, 258, 706
FspBI	CTAG	2 cut(s)	425, 456
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	4 cut(s)	117, 213, 258, 706
GsuI	CTGGAG	2 cut(s)	198, 584
HaeIII	GGCC	5 cut(s)	89, 107, 260, 712, 778
HapII	CCGG	8 cut(s)	45, 487, 647, 654, 682, 689, 709, 723
HgaI	GACGC	2 cut(s)	122, 433
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	2 cut(s)	114, 444
Hin1II	CATG	5 cut(s)	253, 289, 302, 319, 602
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	8 cut(s)	41, 92, 239, 459, 657, 664, 685, 726
HpaII	CCGG	8 cut(s)	45, 487, 647, 654, 682, 689, 709, 723
HphI	GGTGA	2 cut(s)	404, 712
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	7 cut(s)	194, 230, 238, 467, 502, 541, 553
Hpy188III	TCNNGA	5 cut(s)	67, 271, 456, 599, 661
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	5 cut(s)	248, 329, 443, 449, 557
HpyAV	CCTTC	4 cut(s)	16, 79, 462, 764
HpyCH4III	ACNGT	4 cut(s)	19, 382, 439, 589
HpyCH4IV	ACGT	2 cut(s)	311, 555
HpyCH4V	TGCA	3 cut(s)	315, 608, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 254, 263
HpyF3I	CTNAG	3 cut(s)	109, 237, 758
HpySE526I	ACGT	2 cut(s)	311, 555
Hsp92I	GRCGYC	2 cut(s)	114, 444
Hsp92II	CATG	5 cut(s)	253, 289, 302, 319, 602
HspAI	GCGC	1 cut(s)	264
KroI	GCCGGC	1 cut(s)	708
KroNI	GCCGGC	1 cut(s)	710
KspI	CCGCGG	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	144, 276, 294, 676
LguI	GCTCTTC	2 cut(s)	471, 600
LmnI	GCTCC	2 cut(s)	25, 698
Lsp1109I	GCAGC	2 cut(s)	224, 717
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	425, 456
MaeII	ACGT	2 cut(s)	311, 555
MaeIII	GTNAC	5 cut(s)	376, 670, 691, 718, 761
MalI	GATC	4 cut(s)	146, 278, 296, 678
MboI	GATC	4 cut(s)	144, 276, 294, 676
MboII	GAAGA	5 cut(s)	47, 383, 488, 587, 731
MhlI	GDGCHC	2 cut(s)	423, 703
MluCI	AATT	2 cut(s)	61, 782
MlyI	GAGTC	2 cut(s)	248, 735
MmeI	TCCRAC	3 cut(s)	217, 480, 576
MnlI	CCTC	8 cut(s)	31, 173, 180, 224, 496, 535, 587, 767
MroNI	GCCGGC	1 cut(s)	708
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	339
MspI	CCGG	8 cut(s)	45, 487, 647, 654, 682, 689, 709, 723
MspR9I	CCNGG	3 cut(s)	46, 104, 487
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	113, 254, 263
NaeI	GCCGGC	1 cut(s)	710
NciI	CCSGG	2 cut(s)	46, 487
NdeII	GATC	4 cut(s)	144, 276, 294, 676
NgoMIV	GCCGGC	1 cut(s)	708
NlaIII	CATG	5 cut(s)	253, 289, 302, 319, 602
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	4 cut(s)	670, 691, 718, 761
PagI	TCATGA	1 cut(s)	598
PaqCI	CACCTGC	1 cut(s)	380
PciSI	GCTCTTC	2 cut(s)	471, 600
PcsI	WCGNNNNNNNCGW	2 cut(s)	468, 624
PdiI	GCCGGC	1 cut(s)	710
PfeI	GAWTC	6 cut(s)	41, 92, 459, 657, 664, 685
PfoI	TCCNGGA	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	118, 214, 259, 707
Ple19I	CGATCG	1 cut(s)	679
PleI	GAGTC	2 cut(s)	247, 734
PpsI	GAGTC	2 cut(s)	247, 734
Psp6I	CCWGG	1 cut(s)	102
PspEI	GGTNACC	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	2 cut(s)	190, 776
PvuI	CGATCG	1 cut(s)	679
RsaI	GTAC	2 cut(s)	164, 569
RsaNI	GTAC	2 cut(s)	163, 568
RseI	CAYNNNNRTG	1 cut(s)	603
SacII	CCGCGG	1 cut(s)	340
SapI	GCTCTTC	2 cut(s)	471, 600
SatI	GCNGC	4 cut(s)	117, 213, 258, 706
Sau3AI	GATC	4 cut(s)	144, 276, 294, 676
Sau96I	GGNCC	2 cut(s)	190, 776
SchI	GAGTC	2 cut(s)	248, 735
ScrFI	CCNGG	3 cut(s)	46, 104, 487
SduI	GDGCHC	2 cut(s)	423, 703
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	588
Sfr303I	CCGCGG	1 cut(s)	340
SgrBI	CCGCGG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	603
Sse9I	AATT	2 cut(s)	61, 782
SsiI	CCGC	6 cut(s)	117, 160, 257, 337, 339, 730
SspMI	CTAG	2 cut(s)	425, 456
StyD4I	CCNGG	3 cut(s)	44, 102, 485
StyI	CCWWGG	1 cut(s)	733
TaaI	ACNGT	4 cut(s)	19, 382, 439, 589
TaiI	ACGT	2 cut(s)	314, 558
TaqI	TCGA	1 cut(s)	447
TaqII	GACCGA	2 cut(s)	86, 689
TasI	AATT	2 cut(s)	61, 782
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	2 cut(s)	119, 260
TfiI	GAWTC	6 cut(s)	41, 92, 459, 657, 664, 685
TscAI	CASTG	2 cut(s)	675, 720
TseFI	GTSAC	4 cut(s)	670, 691, 718, 761
TseI	GCWGC	2 cut(s)	212, 705
Tsp45I	GTSAC	4 cut(s)	670, 691, 718, 761
TspDTI	ATGAA	2 cut(s)	587, 615
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	675, 720
VpaK11BI	GGWCC	1 cut(s)	190
XbaI	TCTAGA	1 cut(s)	455
XspI	CTAG	2 cut(s)	425, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.