Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Reverse (-)

18443855 .. 18444325

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTGGAGAAGGCCGAGTCCATCAACTGGGCCTTGGACGTCGTCGTGTCGCTGAAAGACCCTATCACGATCCACGAGGCGATGCAGTACTCTCTCCTCACCGGAGGCAAGCGGGTCCGACCCGTTTTGTGTCTCACGGCGTGCGAGCTCGTCAAAGGCGACGAGTCCGTGGCGATGCCGGCAGCCTGCGCTGTCGAGATGATCCACACCATGTCGCTGATCTACGACGACTTGCCATGCATGGACAACGACGACCTCCGCCGTGGAAAACCCACCAACCACAAGGTTTTTGAGGAAGATGTCGCCGTTTTAGCCGGCGACGCGCTTCTCTCCTTCGCGTTTGAGCACCTCACCTTCTCCACCATCGGCGTCGAGCATTCTTTGAAAACAGTGGAGGTGCGGCGGCGACGACGGCAGGGGAAGGAGGAGGGGCTGCCGCCGGGGCCCATTGCTGGTAGTAGGGGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

157

Amino Acids

17.09

Weight (kDa)

5.53

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	24 - 120	2.3e-27	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccB7I	CCANNNNNTGG	1 cut(s)	27
AccII	CGCG	2 cut(s)	323, 338
AciI	CCGC	5 cut(s)	112, 259, 400, 403, 437
AclWI	GGATC	2 cut(s)	64, 196
AcyI	GRCGYC	2 cut(s)	39, 369
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	27, 452
AgsI	TTSAA	1 cut(s)	385
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw21I	GWGCWC	2 cut(s)	150, 348
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	64, 196
AoxI	GGCC	3 cut(s)	12, 30, 443
ApaI	GGGCCC	1 cut(s)	447
ApeKI	GCWGC	2 cut(s)	182, 433
AspLEI	GCGC	2 cut(s)	191, 325
AspS9I	GGNCC	4 cut(s)	30, 115, 443, 444
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	2 cut(s)	91, 343
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	447
BanII	GRGCYC	2 cut(s)	150, 447
BauI	CACGAG	1 cut(s)	74
Bbv12I	GWGCWC	2 cut(s)	150, 348
BbvI	GCAGC	2 cut(s)	194, 420
BccI	CCATC	2 cut(s)	29, 371
BceAI	ACGGC	4 cut(s)	153, 246, 290, 428
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	137
BglI	GCCNNNNNGGC	1 cut(s)	442
BisI	GCNGC	5 cut(s)	183, 401, 404, 434, 437
BlsI	GCNGC	5 cut(s)	184, 402, 405, 435, 438
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	4 cut(s)	30, 115, 443, 444
BmiI	GGNNCC	3 cut(s)	116, 444, 445
BmrFI	CCNGG	1 cut(s)	441
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	2 cut(s)	72, 165
BmuI	ACTGGG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	441
BsaHI	GRCGYC	2 cut(s)	39, 369
BsaJI	CCNNGG	4 cut(s)	33, 168, 262, 440
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 452
Bse118I	RCCGGY	2 cut(s)	178, 314
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	447
BseDI	CCNNGG	4 cut(s)	33, 168, 262, 440
BseLI	CCNNNNNNNGG	2 cut(s)	27, 452
BseMI	GCAATG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	2 cut(s)	86, 440
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	194, 420
Bsh1236I	CGCG	2 cut(s)	323, 338
BshFI	GGCC	3 cut(s)	14, 32, 445
BsiHKAI	GWGCWC	2 cut(s)	150, 348
BsiSI	CCGG	4 cut(s)	102, 179, 315, 440
BslI	CCNNNNNNNGG	2 cut(s)	27, 452
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	3 cut(s)	14, 32, 445
Bsp120I	GGGCCC	1 cut(s)	443
Bsp1286I	GDGCHC	3 cut(s)	150, 348, 447
Bsp143I	GATC	3 cut(s)	69, 201, 219
BspACI	CCGC	5 cut(s)	112, 259, 400, 403, 437
BspANI	GGCC	3 cut(s)	14, 32, 445
BspFNI	CGCG	2 cut(s)	323, 338
BspLI	GGNNCC	3 cut(s)	116, 444, 445
BspPI	GGATC	2 cut(s)	64, 196
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	2 cut(s)	178, 314
BsrI	ACTGG	1 cut(s)	32
BssAI	RCCGGY	2 cut(s)	178, 314
BssECI	CCNNGG	4 cut(s)	33, 168, 262, 440
BssMI	GATC	3 cut(s)	69, 201, 219
BssNI	GRCGYC	2 cut(s)	39, 369
BssSI	CACGAG	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	2 cut(s)	39, 369
BstC8I	GCNNGC	6 cut(s)	110, 142, 146, 180, 187, 316
BstDSI	CCRYGG	2 cut(s)	168, 262
BstFNI	CGCG	2 cut(s)	323, 338
BstHHI	GCGC	2 cut(s)	191, 325
BstKTI	GATC	3 cut(s)	72, 204, 222
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	69, 201, 219
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 188, 311, 320, 412, 442
BstSCI	CCNGG	1 cut(s)	439
BstSLI	GKGCMC	1 cut(s)	447
BstUI	CGCG	2 cut(s)	323, 338
BstV1I	GCAGC	2 cut(s)	194, 420
BsuRI	GGCC	3 cut(s)	14, 32, 445
BtgI	CCRYGG	2 cut(s)	168, 262
BtgZI	GCGATG	2 cut(s)	95, 188
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	6 cut(s)	110, 142, 146, 180, 187, 316
CfoI	GCGC	2 cut(s)	191, 325
Cfr10I	RCCGGY	2 cut(s)	178, 314
Cfr13I	GGNCC	4 cut(s)	30, 115, 443, 444
CseI	GACGC	2 cut(s)	329, 358
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	211, 237, 241
CviJI	RGCY	7 cut(s)	14, 32, 148, 185, 314, 433, 445
CviKI_1	RGCY	7 cut(s)	14, 32, 148, 185, 314, 433, 445
CviQI	GTAC	1 cut(s)	88
DpnI	GATC	3 cut(s)	71, 203, 221
DpnII	GATC	3 cut(s)	69, 201, 219
DraIII	CACNNNGTG	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	2 cut(s)	150, 447
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	242
EcoT38I	GRGCYC	2 cut(s)	150, 447
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	214, 240, 244
FaiI	YATR	3 cut(s)	212, 238, 242
FatI	CATG	3 cut(s)	210, 236, 240
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	5 cut(s)	183, 401, 404, 434, 437
FriOI	GRGCYC	2 cut(s)	150, 447
Fsp4HI	GCNGC	5 cut(s)	183, 401, 404, 434, 437
GlaI	GCGC	2 cut(s)	190, 324
GluI	GCNGC	5 cut(s)	183, 401, 404, 434, 437
HaeIII	GGCC	3 cut(s)	14, 32, 445
HapII	CCGG	4 cut(s)	102, 179, 315, 440
HgaI	GACGC	2 cut(s)	329, 358
HhaI	GCGC	2 cut(s)	191, 325
Hin1I	GRCGYC	2 cut(s)	39, 369
Hin1II	CATG	3 cut(s)	214, 240, 244
Hin6I	GCGC	2 cut(s)	189, 323
HinP1I	GCGC	2 cut(s)	189, 323
HinfI	GANTC	2 cut(s)	17, 164
HpaII	CCGG	4 cut(s)	102, 179, 315, 440
HphI	GGTGA	2 cut(s)	91, 343
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	2 cut(s)	67, 196
Hpy99I	CGWCG	9 cut(s)	44, 47, 164, 230, 254, 323, 374, 411, 414
HpyAV	CCTTC	4 cut(s)	4, 343, 364, 415
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	85, 240
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 188, 311, 320, 412, 442
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	2 cut(s)	39, 369
Hsp92II	CATG	3 cut(s)	214, 240, 244
HspAI	GCGC	2 cut(s)	189, 323
KroI	GCCGGC	2 cut(s)	178, 314
KroNI	GCCGGC	2 cut(s)	180, 316
Kzo9I	GATC	3 cut(s)	69, 201, 219
LpnPI	CCDG	8 cut(s)	13, 115, 192, 199, 328, 401, 438, 453
Lsp1109I	GCAGC	2 cut(s)	194, 420
LweI	GCATC	2 cut(s)	72, 165
MaeII	ACGT	1 cut(s)	39
MalI	GATC	3 cut(s)	71, 203, 221
MboI	GATC	3 cut(s)	69, 201, 219
MboII	GAAGA	1 cut(s)	308
MhlI	GDGCHC	3 cut(s)	150, 348, 447
MlyI	GAGTC	2 cut(s)	26, 173
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	9 cut(s)	70, 98, 107, 266, 286, 359, 388, 418, 421
Mph1103I	ATGCAT	1 cut(s)	242
MroNI	GCCGGC	2 cut(s)	178, 314
MspI	CCGG	4 cut(s)	102, 179, 315, 440
MspR9I	CCNGG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	376
MvnI	CGCG	2 cut(s)	323, 338
MwoI	GCNNNNNNNGC	6 cut(s)	179, 188, 311, 320, 412, 442
NaeI	GCCGGC	2 cut(s)	180, 316
NciI	CCSGG	1 cut(s)	441
NdeII	GATC	3 cut(s)	69, 201, 219
NgoMIV	GCCGGC	2 cut(s)	178, 314
NlaIII	CATG	3 cut(s)	214, 240, 244
NlaIV	GGNNCC	3 cut(s)	116, 444, 445
NmeAIII	GCCGAG	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	376
PdiI	GCCGGC	2 cut(s)	180, 316
PflFI	GACNNNGTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	5 cut(s)	184, 402, 405, 435, 438
PleI	GAGTC	2 cut(s)	25, 172
PpsI	GAGTC	2 cut(s)	25, 172
Psp124BI	GAGCTC	1 cut(s)	150
PspN4I	GGNNCC	3 cut(s)	116, 444, 445
PspOMI	GGGCCC	1 cut(s)	443
PspPI	GGNCC	4 cut(s)	30, 115, 443, 444
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	150
SatI	GCNGC	5 cut(s)	183, 401, 404, 434, 437
Sau3AI	GATC	3 cut(s)	69, 201, 219
Sau96I	GGNCC	4 cut(s)	30, 115, 443, 444
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	2 cut(s)	26, 173
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	3 cut(s)	150, 348, 447
SetI	ASST	7 cut(s)	42, 150, 258, 288, 351, 356, 399
SfaNI	GCATC	2 cut(s)	72, 165
SinI	GGWCC	1 cut(s)	115
SsiI	CCGC	5 cut(s)	112, 259, 400, 403, 437
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	195, 372
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	3 cut(s)	403, 406, 439
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	2 cut(s)	182, 433
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	1 cut(s)	396
Tth111I	GACNNNGTC	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	115
ZraI	GACGTC	1 cut(s)	40
ZrmI	AGTACT	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.