Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Reverse (-)

25962515 .. 25963097

Gene Structure 583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028675

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCCAGAAATCAAACTCCAGATCAGAACTCGACGCCACCATCTCACCAGGGCCTTAGACGCTGCCATTTCGCTGAAAGACCCGATTACGATCCACGAAGCGGTAATCTTTCCTCGCCGGAGGCAAGAGGCGTGCGAGATCGTCAGAGGGTCTGAGTCAGTTACCATGCCGGCGGCCTGCGCCGTCAAGATGATCCACACCATGTTGTTGATCCACGACGACTTGCCGTGTATGGATAATGACGATCTCCGCCGCGGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGACGTTGCAGTTTTGGCGGGCGAAGCGCTTCTCTCCTTCGCGGTCGAGCACCTAGCCTTGTCCACCGTCGGCATCGAGCCTTCTAGAATCATCCGAGCCGTGGAAGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTAGCGGGTCAAGTCGTGGATATCCACTCTGAGGGGTTATCCGACGTGGGACTGGAGCACCTGGAGTACATACACCTCCACAAAATTGTAGCTCTTCTTGAATGTAAGAAGAAGATAAAAAGGAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

186

Amino Acids

20.52

Weight (kDa)

6.83

Isoelectric Point (pI)

59.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	53 - 171	3.3e-21	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	255, 329
AciI	CCGC	8 cut(s)	101, 173, 250, 253, 255, 305, 329, 431
AclWI	GGATC	3 cut(s)	85, 187, 205
AcyI	GRCGYC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	494
AfeI	AGCGCT	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	100, 388, 457
AgsI	TTSAA	1 cut(s)	527
AjiI	CACGTC	1 cut(s)	472
AjnI	CCWGG	2 cut(s)	47, 486
AluBI	AGCT	2 cut(s)	397, 518
AluI	AGCT	2 cut(s)	397, 518
Alw21I	GWGCWC	2 cut(s)	339, 486
AlwI	GGATC	3 cut(s)	85, 187, 205
Aor51HI	AGCGCT	1 cut(s)	315
AoxI	GGCC	2 cut(s)	51, 174
ApeKI	GCWGC	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	2 cut(s)	182, 316
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	2 cut(s)	339, 486
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	3 cut(s)	167, 211, 371
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	2 cut(s)	49, 488
BcnI	CCSGG	1 cut(s)	403
BfaI	CTAG	2 cut(s)	341, 372
BfoI	RGCGCY	1 cut(s)	317
BisI	GCNGC	3 cut(s)	63, 174, 253
BlsI	GCNGC	3 cut(s)	64, 175, 254
Bme1390I	CCNGG	3 cut(s)	49, 403, 488
BmgBI	CACGTC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	51
BmrFI	CCNGG	3 cut(s)	49, 403, 488
BmsI	GCATC	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	294
BpmI	CTGGAG	2 cut(s)	500, 509
BpuMI	CCSGG	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	34
BsaJI	CCNNGG	3 cut(s)	48, 253, 387
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 388, 457
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	2 cut(s)	49, 488
BseDI	CCNNGG	3 cut(s)	48, 253, 387
BseGI	GGATG	1 cut(s)	378
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	3 cut(s)	100, 388, 457
BseMII	CTCAG	2 cut(s)	144, 447
BseNI	ACTGG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	49
Bsh1236I	CGCG	2 cut(s)	255, 329
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	53, 176
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	2 cut(s)	339, 486
BsiSI	CCGG	3 cut(s)	118, 170, 403
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	3 cut(s)	100, 388, 457
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	2 cut(s)	53, 176
Bsp1286I	GDGCHC	2 cut(s)	339, 486
Bsp143I	GATC	6 cut(s)	21, 90, 138, 192, 210, 244
BspACI	CCGC	8 cut(s)	101, 173, 250, 253, 255, 305, 329, 431
BspANI	GGCC	2 cut(s)	53, 176
BspCNI	CTCAG	2 cut(s)	145, 448
BspFNI	CGCG	2 cut(s)	255, 329
BspPI	GGATC	3 cut(s)	85, 187, 205
BspQI	GCTCTTC	2 cut(s)	387, 525
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	483
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	48, 253, 387
BssMI	GATC	6 cut(s)	21, 90, 138, 192, 210, 244
BssNI	GRCGYC	1 cut(s)	34
Bst2UI	CCWGG	2 cut(s)	49, 488
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	387, 525
BstACI	GRCGYC	1 cut(s)	34
BstC8I	GCNNGC	5 cut(s)	133, 171, 178, 307, 399
BstDEI	CTNAG	3 cut(s)	55, 153, 456
BstDSI	CCRYGG	2 cut(s)	253, 387
BstF5I	GGATG	1 cut(s)	378
BstFNI	CGCG	2 cut(s)	255, 329
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	2 cut(s)	182, 316
BstKTI	GATC	6 cut(s)	24, 93, 141, 195, 213, 247
BstMBI	GATC	6 cut(s)	21, 90, 138, 192, 210, 244
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 179, 302, 311
BstNI	CCWGG	2 cut(s)	49, 488
BstSCI	CCNGG	3 cut(s)	47, 401, 486
BstUI	CGCG	2 cut(s)	255, 329
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	53, 176
BtgI	CCRYGG	2 cut(s)	253, 387
BtrI	CACGTC	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	378
Cac8I	GCNNGC	5 cut(s)	133, 171, 178, 307, 399
CfoI	GCGC	2 cut(s)	182, 316
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	51
Cfr42I	CCGCGG	1 cut(s)	256
CseI	GACGC	2 cut(s)	42, 68
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	2 cut(s)	166, 202
CviJI	RGCY	9 cut(s)	53, 176, 262, 344, 367, 386, 397, 518, 554
CviKI_1	RGCY	9 cut(s)	53, 176, 262, 344, 367, 386, 397, 518, 554
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	3 cut(s)	55, 153, 456
DpnI	GATC	6 cut(s)	23, 92, 140, 194, 212, 246
DpnII	GATC	6 cut(s)	21, 90, 138, 192, 210, 244
Eam1104I	CTCTTC	2 cut(s)	387, 525
EarI	CTCTTC	2 cut(s)	387, 525
EciI	GGCGGA	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	448
Eco47III	AGCGCT	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	47, 486
EcoRV	GATATC	1 cut(s)	448
FaeI	CATG	2 cut(s)	169, 205
FaiI	YATR	4 cut(s)	167, 203, 233, 497
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	2 cut(s)	165, 201
FauI	CCCGC	3 cut(s)	248, 298, 424
Fnu4HI	GCNGC	3 cut(s)	63, 174, 253
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	63, 174, 253
FspBI	CTAG	2 cut(s)	341, 372
GlaI	GCGC	2 cut(s)	181, 315
GluI	GCNGC	3 cut(s)	63, 174, 253
GsuI	CTGGAG	2 cut(s)	500, 509
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	53, 176
HapII	CCGG	3 cut(s)	118, 170, 403
HgaI	GACGC	2 cut(s)	42, 68
HhaI	GCGC	2 cut(s)	182, 316
Hin1I	GRCGYC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	169, 205
Hin6I	GCGC	2 cut(s)	180, 314
HinP1I	GCGC	2 cut(s)	180, 314
HinfI	GANTC	2 cut(s)	155, 375
HpaII	CCGG	3 cut(s)	118, 170, 403
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	7 cut(s)	26, 146, 154, 383, 418, 457, 469
Hpy188III	TCNNGA	4 cut(s)	19, 187, 372, 524
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	4 cut(s)	36, 221, 359, 473
HpyAV	CCTTC	2 cut(s)	334, 378
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	2 cut(s)	291, 471
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 179, 302, 311
HpyF3I	CTNAG	3 cut(s)	55, 153, 456
HpySE526I	ACGT	2 cut(s)	291, 471
Hsp92I	GRCGYC	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	169, 205
HspAI	GCGC	2 cut(s)	180, 314
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
KspI	CCGCGG	1 cut(s)	256
Kzo9I	GATC	6 cut(s)	21, 90, 138, 192, 210, 244
LguI	GCTCTTC	2 cut(s)	387, 525
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	2 cut(s)	341, 372
MaeII	ACGT	2 cut(s)	291, 471
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	6 cut(s)	23, 92, 140, 194, 212, 246
MboI	GATC	6 cut(s)	21, 90, 138, 192, 210, 244
MboII	GAAGA	5 cut(s)	299, 404, 512, 547, 550
MhlI	GDGCHC	2 cut(s)	339, 486
MluCI	AATT	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	396, 492
MnlI	CCTC	7 cut(s)	114, 121, 123, 140, 412, 451, 512
MroNI	GCCGGC	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	3 cut(s)	118, 170, 403
MspR9I	CCNGG	3 cut(s)	49, 403, 488
MvaI	CCWGG	2 cut(s)	49, 488
MvnI	CGCG	2 cut(s)	255, 329
MwoI	GCNNNNNNNGC	4 cut(s)	59, 179, 302, 311
NaeI	GCCGGC	1 cut(s)	171
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	6 cut(s)	21, 90, 138, 192, 210, 244
NgoMIV	GCCGGC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	169, 205
PciSI	GCTCTTC	2 cut(s)	387, 525
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PdiI	GCCGGC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	375
PkrI	GCNGC	3 cut(s)	64, 175, 254
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	2 cut(s)	47, 486
PspGI	CCWGG	2 cut(s)	47, 486
PspPI	GGNCC	1 cut(s)	51
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SacII	CCGCGG	1 cut(s)	256
SapI	GCTCTTC	2 cut(s)	387, 525
SatI	GCNGC	3 cut(s)	63, 174, 253
Sau3AI	GATC	6 cut(s)	21, 90, 138, 192, 210, 244
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	49, 403, 488
SduI	GDGCHC	2 cut(s)	339, 486
SetI	ASST	8 cut(s)	279, 294, 342, 399, 474, 489, 504, 520
SfaNI	GCATC	1 cut(s)	369
Sfr303I	CCGCGG	1 cut(s)	256
SgrBI	CCGCGG	1 cut(s)	256
Sse9I	AATT	1 cut(s)	510
SsiI	CCGC	8 cut(s)	101, 173, 250, 253, 255, 305, 329, 431
SspMI	CTAG	2 cut(s)	341, 372
StyD4I	CCNGG	3 cut(s)	47, 401, 486
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	2 cut(s)	294, 474
TaqI	TCGA	3 cut(s)	31, 333, 363
TasI	AATT	1 cut(s)	510
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	2 cut(s)	176, 255
TfiI	GAWTC	1 cut(s)	375
TseI	GCWGC	1 cut(s)	62
XbaI	TCTAGA	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	2 cut(s)	341, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.