Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002340.1

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

23987 .. 24998

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002340.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgccggcggcctgcaccgtcaagatgatccacaccatgtggttgatccacgacgacttgccgtgcatggataatgacgatctccgccgcgggaagaccaccaaccacaaggttttcggcgaagacgttgtagttttggtgggcgaagcgcttctctccttcgcggtcgagcacctagccttgtccaccgtcggcatcgagttttctagaatcatccgagccgtggaagagcttgcccggtcaatcgggtcggagagattggtagcgagtcaagtcgtggatatccactctgaggggttatccgacgtgggactggagcacctggagattccggtcatcggtcgtcggatttcggtgaccggttcccggaatccggtcatcggtcgccggaatccggtcaccggtcgccggagaccgcgccggccactggtcaccggagcacagcaaggtggagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

152

Amino Acids

16.6

Weight (kDa)

7.92

Isoelectric Point (pI)

66.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	90, 164, 418
AciI	CCGC	6 cut(s)	8, 85, 88, 90, 164, 416
AclWI	GGATC	2 cut(s)	22, 40
AcoI	YGGCCR	1 cut(s)	422
AdeI	CACNNNGTG	1 cut(s)	39
AfeI	AGCGCT	1 cut(s)	150
AgeI	ACCGGT	2 cut(s)	359, 401
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	3 cut(s)	174, 321, 442
Alw26I	GTCTC	1 cut(s)	406
AlwI	GGATC	2 cut(s)	22, 40
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	2 cut(s)	9, 422
AsiGI	ACCGGT	2 cut(s)	359, 401
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	151, 420
AsuC2I	CCSGG	2 cut(s)	238, 367
AsuHPI	GGTGA	3 cut(s)	367, 391, 424
BbsI	GAAGAC	2 cut(s)	101, 129
Bbv12I	GWGCWC	3 cut(s)	174, 321, 442
BceAI	ACGGC	2 cut(s)	46, 206
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	2 cut(s)	238, 367
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	2 cut(s)	176, 207
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	2 cut(s)	9, 88
BlsI	GCNGC	2 cut(s)	10, 89
Bme1390I	CCNGG	3 cut(s)	238, 323, 367
BmgBI	CACGTC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	3 cut(s)	238, 323, 367
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	2 cut(s)	101, 129
BpmI	CTGGAG	2 cut(s)	335, 344
BpuMI	CCSGG	2 cut(s)	238, 367
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	88, 222
BsaWI	WCCGGW	6 cut(s)	331, 359, 373, 394, 401, 434
Bse118I	RCCGGY	4 cut(s)	4, 359, 401, 420
Bse1I	ACTGG	2 cut(s)	318, 432
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	88, 222
BseGI	GGATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	318, 432
Bsh1236I	CGCG	3 cut(s)	90, 164, 418
Bsh1285I	CGRYCG	4 cut(s)	168, 343, 385, 406
BshFI	GGCC	2 cut(s)	11, 424
BshTI	ACCGGT	2 cut(s)	359, 401
BsiEI	CGRYCG	4 cut(s)	168, 343, 385, 406
BsiHKAI	GWGCWC	3 cut(s)	174, 321, 442
BslFI	GGGAC	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	2 cut(s)	11, 424
Bso31I	GGTCTC	1 cut(s)	406
Bsp1286I	GDGCHC	3 cut(s)	174, 321, 442
Bsp143I	GATC	3 cut(s)	27, 45, 79
BspACI	CCGC	6 cut(s)	8, 85, 88, 90, 164, 416
BspANI	GGCC	2 cut(s)	11, 424
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	3 cut(s)	90, 164, 418
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	2 cut(s)	22, 40
BspQI	GCTCTTC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	406
BsrFI	RCCGGY	4 cut(s)	4, 359, 401, 420
BsrI	ACTGG	2 cut(s)	318, 432
BssAI	RCCGGY	4 cut(s)	4, 359, 401, 420
BssECI	CCNNGG	2 cut(s)	88, 222
BssMI	GATC	3 cut(s)	27, 45, 79
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	19, 190
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	4 cut(s)	6, 13, 234, 422
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	2 cut(s)	88, 222
BstEII	GGTNACC	3 cut(s)	355, 397, 430
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	3 cut(s)	90, 164, 418
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	151, 420
BstKTI	GATC	3 cut(s)	30, 48, 82
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	3 cut(s)	27, 45, 79
BstMCI	CGRYCG	4 cut(s)	168, 343, 385, 406
BstNI	CCWGG	1 cut(s)	323
BstPI	GGTNACC	3 cut(s)	355, 397, 430
BstSCI	CCNGG	3 cut(s)	236, 321, 365
BstUI	CGCG	3 cut(s)	90, 164, 418
BstV2I	GAAGAC	2 cut(s)	101, 129
BsuRI	GGCC	2 cut(s)	11, 424
BtgI	CCRYGG	2 cut(s)	88, 222
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	4 cut(s)	6, 13, 234, 422
CfoI	GCGC	2 cut(s)	151, 420
Cfr10I	RCCGGY	4 cut(s)	4, 359, 401, 420
Cfr42I	CCGCGG	1 cut(s)	91
CspAI	ACCGGT	2 cut(s)	359, 401
CviAII	CATG	2 cut(s)	37, 67
CviJI	RGCY	5 cut(s)	11, 179, 221, 232, 424
CviKI_1	RGCY	5 cut(s)	11, 179, 221, 232, 424
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	3 cut(s)	29, 47, 81
DpnII	GATC	3 cut(s)	27, 45, 79
DraIII	CACNNNGTG	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	150
Eco91I	GGTNACC	3 cut(s)	355, 397, 430
EcoO65I	GGTNACC	3 cut(s)	355, 397, 430
EcoRII	CCWGG	1 cut(s)	321
EcoRV	GATATC	1 cut(s)	283
FaeI	CATG	2 cut(s)	40, 70
FaiI	YATR	2 cut(s)	38, 68
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	2 cut(s)	36, 66
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	9, 88
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	9, 88
FspBI	CTAG	2 cut(s)	176, 207
GlaI	GCGC	2 cut(s)	150, 419
GluI	GCNGC	2 cut(s)	9, 88
GsuI	CTGGAG	2 cut(s)	335, 344
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	11, 424
HhaI	GCGC	2 cut(s)	151, 420
Hin1II	CATG	2 cut(s)	40, 70
Hin6I	GCGC	2 cut(s)	149, 418
HinP1I	GCGC	2 cut(s)	149, 418
HinfI	GANTC	5 cut(s)	210, 268, 328, 370, 391
HphI	GGTGA	3 cut(s)	367, 391, 424
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	5 cut(s)	218, 253, 292, 304, 348
Hpy188III	TCNNGA	2 cut(s)	22, 207
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	4 cut(s)	56, 194, 308, 348
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	19, 190
HpyCH4IV	ACGT	2 cut(s)	126, 306
HpyCH4V	TGCA	2 cut(s)	15, 66
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	2 cut(s)	126, 306
Hsp92II	CATG	2 cut(s)	40, 70
HspAI	GCGC	2 cut(s)	149, 418
KroI	GCCGGC	2 cut(s)	4, 420
KroNI	GCCGGC	2 cut(s)	6, 422
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	27, 45, 79
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	316, 437
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	2 cut(s)	176, 207
MaeII	ACGT	2 cut(s)	126, 306
MaeIII	GTNAC	3 cut(s)	355, 397, 430
MalI	GATC	3 cut(s)	29, 47, 81
MboI	GATC	3 cut(s)	27, 45, 79
MboII	GAAGA	3 cut(s)	106, 134, 239
MhlI	GDGCHC	3 cut(s)	174, 321, 442
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	3 cut(s)	231, 326, 327
MnlI	CCTC	2 cut(s)	286, 446
MroNI	GCCGGC	2 cut(s)	4, 420
MroXI	GAANNNNTTC	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	90
MspR9I	CCNGG	3 cut(s)	238, 323, 367
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	3 cut(s)	90, 164, 418
NaeI	GCCGGC	2 cut(s)	6, 422
NciI	CCSGG	2 cut(s)	238, 367
NdeII	GATC	3 cut(s)	27, 45, 79
NgoMIV	GCCGGC	2 cut(s)	4, 420
NlaIII	CATG	2 cut(s)	40, 70
NlaIV	GGNNCC	1 cut(s)	364
NmuCI	GTSAC	3 cut(s)	355, 397, 430
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdiI	GCCGGC	2 cut(s)	6, 422
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	4 cut(s)	210, 328, 370, 391
PfoI	TCCNGGA	1 cut(s)	365
PinAI	ACCGGT	2 cut(s)	359, 401
PkrI	GCNGC	2 cut(s)	10, 89
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	321
PspEI	GGTNACC	3 cut(s)	355, 397, 430
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	364
SacII	CCGCGG	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	222
SatI	GCNGC	2 cut(s)	9, 88
Sau3AI	GATC	3 cut(s)	27, 45, 79
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	238, 323, 367
SduI	GDGCHC	3 cut(s)	174, 321, 442
SetI	ASST	7 cut(s)	114, 129, 177, 234, 309, 324, 451
SfaNI	GCATC	1 cut(s)	204
Sfr303I	CCGCGG	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	91
SsiI	CCGC	6 cut(s)	8, 85, 88, 90, 164, 416
SspMI	CTAG	2 cut(s)	176, 207
StyD4I	CCNGG	3 cut(s)	236, 321, 365
TaaI	ACNGT	2 cut(s)	19, 190
TaiI	ACGT	2 cut(s)	129, 309
TaqI	TCGA	2 cut(s)	168, 198
TaqII	GACCGA	2 cut(s)	329, 371
TauI	GCSGC	2 cut(s)	11, 90
TfiI	GAWTC	4 cut(s)	210, 328, 370, 391
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	3 cut(s)	355, 397, 430
Tsp45I	GTSAC	3 cut(s)	355, 397, 430
TspRI	CASTG	1 cut(s)	432
XbaI	TCTAGA	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	2 cut(s)	176, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.