Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039635.1

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1800

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039635.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

gtgaaggagcataaggaagaggaatccgggaagcccagtttcaatttcaagaccgatatggtggagaaggccgaatccatctacctggccttagacgccgccgtttcgctgaaagacccgattacgatccacgaagcgatgcggtactctttgctcgctggaggcaagagggtccgacccgttctgtgtgtcgcagcgtgccagctcgtcagagggtctgagtccgtcgccatgctggcggcctgcgctgtcaagatgatccacaccatgtcgttgatccatgacgacttgacgtgcatggataacgacgaactctgccgcgggaagcccaccaaccacaaggttttcagcgaagatgttaccgttttggcaggtgacgagcttttctcctttgcgtttgagcacctagccttgtccaccgtcggcgtcgagccttctagaatcgtccgagccgtggaagagcttgcccggtcaatcgggtcggagggattggtggcaggtcaagtcgtggatacccactccgaggggttatccgacgtgggactggagtacaaacacctctacaaaactgtagctcttcatgaatgtgcagttgttctcggtgttggcgtattgcaactctcccgctcggcccgctccatatcgtggctgacttcagcaaggtcgcaacagaaactaagccaggagcgccggagatgtcgtcgatgccgaagagctgcgatggagctgaggaatacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

246

Amino Acids

27.1

Weight (kDa)

7.22

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
Acc36I	ACCTGC	2 cut(s)	362, 488
AccB7I	CCANNNNNTGG	1 cut(s)	645
AccBSI	CCGCTC	2 cut(s)	627, 636
AccII	CGCG	1 cut(s)	321
AciI	CCGC	7 cut(s)	99, 142, 239, 319, 321, 625, 634
AclWI	GGATC	3 cut(s)	121, 253, 271
AcuI	CTGAAG	1 cut(s)	639
AcyI	GRCGYC	2 cut(s)	96, 426
AfaI	GTAC	2 cut(s)	146, 551
AfiI	CCNNNNNNNGG	3 cut(s)	454, 523, 645
AgsI	TTSAA	2 cut(s)	43, 49
AjiI	CACGTC	2 cut(s)	294, 538
AjnI	CCWGG	2 cut(s)	84, 681
AluBI	AGCT	6 cut(s)	205, 382, 463, 575, 716, 727
AluI	AGCT	6 cut(s)	205, 382, 463, 575, 716, 727
Alw21I	GWGCWC	1 cut(s)	405
AlwI	GGATC	3 cut(s)	121, 253, 271
AoxI	GGCC	4 cut(s)	69, 87, 240, 630
ApeKI	GCWGC	2 cut(s)	194, 716
AspLEI	GCGC	2 cut(s)	248, 690
AspS9I	GGNCC	2 cut(s)	172, 631
AsuC2I	CCSGG	2 cut(s)	28, 469
AsuHPI	GGTGA	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	206, 703
BccI	CCATC	2 cut(s)	86, 715
BceAI	ACGGC	2 cut(s)	86, 437
BciT130I	CCWGG	2 cut(s)	86, 683
BciVI	GTATCC	1 cut(s)	505
BcnI	CCSGG	2 cut(s)	28, 469
BfaI	CTAG	3 cut(s)	407, 438, 739
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	691
BfuAI	ACCTGC	2 cut(s)	362, 488
BfuI	GTATCC	1 cut(s)	505
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	5 cut(s)	99, 195, 240, 319, 717
BlsI	GCNGC	5 cut(s)	100, 196, 241, 320, 718
Bme1390I	CCNGG	4 cut(s)	28, 86, 469, 683
Bme18I	GGWCC	1 cut(s)	172
BmgBI	CACGTC	2 cut(s)	294, 538
BmgT120I	GGNCC	2 cut(s)	172, 631
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	4 cut(s)	28, 86, 469, 683
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	2 cut(s)	129, 695
BmuI	ACTGGG	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	2 cut(s)	180, 566
Bpu10I	CCTNAGC	1 cut(s)	728
BpuMI	CCSGG	2 cut(s)	28, 469
BsaBI	GATNNNNATC	1 cut(s)	125
BsaHI	GRCGYC	2 cut(s)	96, 426
BsaJI	CCNNGG	3 cut(s)	319, 453, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	685, 715
Bsc4I	CCNNNNNNNGG	3 cut(s)	454, 523, 645
Bse1I	ACTGG	2 cut(s)	36, 549
Bse8I	GATNNNNATC	1 cut(s)	125
BseBI	CCWGG	2 cut(s)	86, 683
BseDI	CCNNGG	3 cut(s)	319, 453, 522
BseJI	GATNNNNATC	1 cut(s)	125
BseLI	CCNNNNNNNGG	3 cut(s)	454, 523, 645
BseMII	CTCAG	2 cut(s)	210, 719
BseNI	ACTGG	2 cut(s)	36, 549
BseXI	GCAGC	2 cut(s)	206, 703
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	4 cut(s)	71, 89, 242, 632
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	3 cut(s)	27, 469, 691
BslFI	GGGAC	1 cut(s)	555
BslI	CCNNNNNNNGG	3 cut(s)	454, 523, 645
BsmFI	GGGAC	1 cut(s)	555
BsnI	GGCC	4 cut(s)	71, 89, 242, 632
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	3 cut(s)	126, 258, 276
BspACI	CCGC	7 cut(s)	99, 142, 239, 319, 321, 625, 634
BspANI	GGCC	4 cut(s)	71, 89, 242, 632
BspCNI	CTCAG	2 cut(s)	211, 720
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	1 cut(s)	173
BspMI	ACCTGC	2 cut(s)	362, 488
BspPI	GGATC	3 cut(s)	121, 253, 271
BspQI	GCTCTTC	3 cut(s)	453, 582, 706
BsrBI	CCGCTC	2 cut(s)	627, 636
BsrI	ACTGG	2 cut(s)	36, 549
BssECI	CCNNGG	3 cut(s)	319, 453, 522
BssMI	GATC	3 cut(s)	126, 258, 276
BssNI	GRCGYC	2 cut(s)	96, 426
Bst2UI	CCWGG	2 cut(s)	86, 683
Bst4CI	ACNGT	3 cut(s)	364, 421, 571
Bst6I	CTCTTC	4 cut(s)	12, 453, 582, 706
BstACI	GRCGYC	2 cut(s)	96, 426
BstC8I	GCNNGC	7 cut(s)	156, 199, 203, 237, 244, 465, 634
BstDEI	CTNAG	4 cut(s)	91, 219, 677, 728
BstDSI	CCRYGG	2 cut(s)	319, 453
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	691
BstHHI	GCGC	2 cut(s)	248, 690
BstKTI	GATC	3 cut(s)	129, 261, 279
BstMBI	GATC	3 cut(s)	126, 258, 276
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 236, 245, 633, 687
BstNI	CCWGG	2 cut(s)	86, 683
BstSCI	CCNGG	4 cut(s)	26, 84, 467, 681
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	206, 703
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	71, 89, 242, 632
BtgI	CCRYGG	2 cut(s)	319, 453
BtgZI	GCGATG	2 cut(s)	152, 734
BtrI	CACGTC	2 cut(s)	294, 538
BveI	ACCTGC	2 cut(s)	362, 488
Cac8I	GCNNGC	7 cut(s)	156, 199, 203, 237, 244, 465, 634
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	2 cut(s)	248, 690
Cfr13I	GGNCC	2 cut(s)	172, 631
Cfr42I	CCGCGG	1 cut(s)	322
CseI	GACGC	2 cut(s)	104, 415
Csp6I	GTAC	2 cut(s)	145, 550
CviAII	CATG	5 cut(s)	232, 268, 281, 298, 581
CviQI	GTAC	2 cut(s)	145, 550
DdeI	CTNAG	4 cut(s)	91, 219, 677, 728
DpnI	GATC	3 cut(s)	128, 260, 278
DpnII	GATC	3 cut(s)	126, 258, 276
Eam1104I	CTCTTC	4 cut(s)	12, 453, 582, 706
EarI	CTCTTC	4 cut(s)	12, 453, 582, 706
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	639
EcoRII	CCWGG	2 cut(s)	84, 681
FaeI	CATG	5 cut(s)	235, 271, 284, 301, 584
FaiI	YATR	8 cut(s)	12, 59, 233, 269, 282, 299, 582, 641
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	5 cut(s)	231, 267, 280, 297, 580
FauI	CCCGC	3 cut(s)	314, 632, 641
Fnu4HI	GCNGC	5 cut(s)	99, 195, 240, 319, 717
Fsp4HI	GCNGC	5 cut(s)	99, 195, 240, 319, 717
FspBI	CTAG	3 cut(s)	407, 438, 739
GlaI	GCGC	2 cut(s)	247, 689
GluI	GCNGC	5 cut(s)	99, 195, 240, 319, 717
GsuI	CTGGAG	2 cut(s)	180, 566
HaeII	RGCGCY	1 cut(s)	691
HaeIII	GGCC	4 cut(s)	71, 89, 242, 632
HapII	CCGG	3 cut(s)	27, 469, 691
HgaI	GACGC	2 cut(s)	104, 415
HhaI	GCGC	2 cut(s)	248, 690
Hin1I	GRCGYC	2 cut(s)	96, 426
Hin1II	CATG	5 cut(s)	235, 271, 284, 301, 584
Hin6I	GCGC	2 cut(s)	246, 688
HinP1I	GCGC	2 cut(s)	246, 688
HinfI	GANTC	4 cut(s)	23, 74, 221, 441
HpaII	CCGG	3 cut(s)	27, 469, 691
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	7 cut(s)	176, 212, 220, 449, 484, 523, 535
Hpy188III	TCNNGA	4 cut(s)	49, 253, 438, 581
Hpy8I	GTNNAC	1 cut(s)	417
Hpy99I	CGWCG	6 cut(s)	230, 311, 425, 431, 539, 705
HpyAV	CCTTC	2 cut(s)	61, 444
HpyCH4III	ACNGT	3 cut(s)	364, 421, 571
HpyCH4IV	ACGT	2 cut(s)	293, 537
HpyCH4V	TGCA	3 cut(s)	297, 590, 616
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 236, 245, 633, 687
HpyF3I	CTNAG	4 cut(s)	91, 219, 677, 728
HpySE526I	ACGT	2 cut(s)	293, 537
Hsp92I	GRCGYC	2 cut(s)	96, 426
Hsp92II	CATG	5 cut(s)	235, 271, 284, 301, 584
HspAI	GCGC	2 cut(s)	246, 688
KspI	CCGCGG	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	126, 258, 276
LguI	GCTCTTC	3 cut(s)	453, 582, 706
LmnI	GCTCC	4 cut(s)	7, 641, 685, 724
Lsp1109I	GCAGC	2 cut(s)	206, 703
LweI	GCATC	2 cut(s)	129, 695
MaeI	CTAG	3 cut(s)	407, 438, 739
MaeII	ACGT	2 cut(s)	293, 537
MaeIII	GTNAC	2 cut(s)	358, 374
MalI	GATC	3 cut(s)	128, 260, 278
MbiI	CCGCTC	2 cut(s)	627, 636
MboI	GATC	3 cut(s)	126, 258, 276
MboII	GAAGA	5 cut(s)	29, 365, 470, 569, 723
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	3 cut(s)	199, 462, 558
MnlI	CCTC	8 cut(s)	13, 155, 162, 206, 478, 517, 569, 723
MslI	CAYNNNNRTG	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	3 cut(s)	27, 469, 691
MspR9I	CCNGG	4 cut(s)	28, 86, 469, 683
MvaI	CCWGG	2 cut(s)	86, 683
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	5 cut(s)	95, 236, 245, 633, 687
NciI	CCSGG	2 cut(s)	28, 469
NdeII	GATC	3 cut(s)	126, 258, 276
NlaIII	CATG	5 cut(s)	235, 271, 284, 301, 584
NlaIV	GGNNCC	1 cut(s)	173
NmeAIII	GCCGAG	1 cut(s)	608
NmuCI	GTSAC	1 cut(s)	374
PagI	TCATGA	1 cut(s)	580
PaqCI	CACCTGC	1 cut(s)	362
PciSI	GCTCTTC	3 cut(s)	453, 582, 706
PcsI	WCGNNNNNNNCGW	3 cut(s)	450, 606, 706
PfeI	GAWTC	3 cut(s)	23, 74, 441
PflMI	CCANNNNNTGG	1 cut(s)	645
PfoI	TCCNGGA	1 cut(s)	26
PkrI	GCNGC	5 cut(s)	100, 196, 241, 320, 718
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	84, 681
PspGI	CCWGG	2 cut(s)	84, 681
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	2 cut(s)	172, 631
RsaI	GTAC	2 cut(s)	146, 551
RsaNI	GTAC	2 cut(s)	145, 550
RseI	CAYNNNNRTG	1 cut(s)	585
SacII	CCGCGG	1 cut(s)	322
SapI	GCTCTTC	3 cut(s)	453, 582, 706
SatI	GCNGC	5 cut(s)	99, 195, 240, 319, 717
Sau3AI	GATC	3 cut(s)	126, 258, 276
Sau96I	GGNCC	2 cut(s)	172, 631
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	4 cut(s)	28, 86, 469, 683
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	2 cut(s)	129, 695
SfcI	CTRYAG	1 cut(s)	570
Sfr303I	CCGCGG	1 cut(s)	322
SgrBI	CCGCGG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	585
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	7 cut(s)	99, 142, 239, 319, 321, 625, 634
SspMI	CTAG	3 cut(s)	407, 438, 739
StyD4I	CCNGG	4 cut(s)	26, 84, 467, 681
TaaI	ACNGT	3 cut(s)	364, 421, 571
TaiI	ACGT	2 cut(s)	296, 540
TaqI	TCGA	2 cut(s)	429, 703
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	43
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	3 cut(s)	101, 242, 321
TfiI	GAWTC	3 cut(s)	23, 74, 441
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	2 cut(s)	194, 716
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	569, 597
TspGWI	ACGGA	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	172
XbaI	TCTAGA	1 cut(s)	437
XspI	CTAG	3 cut(s)	407, 438, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.