Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

12303999 .. 12304538

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG147200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTGGAGAAGGCCGAATCCATCAACCGGGCCTTAGACGCCGCCGTTTCGCTGAAAGACCCGATTACGATCCACGAAGCGATGCGGTACTCTTTGCTCGCTGGAGGCAAGAGGGTCCGACCCGTTCTGTGTGTCGCAGCGTGCCAGCTCGTCAGAGGGTCTGAGTCCGTCGCCGTGCTGGCGGCCTGCGCTGTCAAGATGATCCACACCATGTCGTTGATCCATGACGACTTGACGTGCATGGATAACGACGAACTCTGCCGCGGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGATGTTACCGTTTTGGCAGGTGACGAGCTTTTCTCCTTTGCGTTTGAGCACCTAGCCTTGTCCACCGTCGGCGTCGAGCCTTCTAGAATCGTCCGAGCCGTGGAAGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTGGCAGGTCAAGTCGTGGATACCCACTCCGAGGGGTTATCCGACGTGGGACTGGATCGAGTACCTGGAGTACAAACACCTCCACAAAACTGTAGCTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

179

Amino Acids

19.02

Weight (kDa)

5.18

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	24 - 157	1.2e-27	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	305
Acc36I	ACCTGC	2 cut(s)	305, 431
AccII	CGCG	1 cut(s)	264
AciI	CCGC	5 cut(s)	42, 85, 182, 262, 264
AclWI	GGATC	4 cut(s)	64, 196, 214, 498
AcyI	GRCGYC	2 cut(s)	39, 369
AfaI	GTAC	3 cut(s)	89, 498, 507
AfiI	CCNNNNNNNGG	3 cut(s)	27, 397, 466
AjiI	CACGTC	2 cut(s)	237, 481
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	4 cut(s)	148, 325, 406, 531
AluI	AGCT	4 cut(s)	148, 325, 406, 531
Alw21I	GWGCWC	1 cut(s)	348
AlwI	GGATC	4 cut(s)	64, 196, 214, 498
AoxI	GGCC	3 cut(s)	12, 30, 183
ApeKI	GCWGC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	30, 115
AsuC2I	CCSGG	2 cut(s)	29, 412
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	3 cut(s)	29, 158, 380
BciT130I	CCWGG	1 cut(s)	501
BciVI	GTATCC	1 cut(s)	448
BcnI	CCSGG	2 cut(s)	29, 412
BfaI	CTAG	2 cut(s)	350, 381
BfmI	CTRYAG	1 cut(s)	526
BfuAI	ACCTGC	2 cut(s)	305, 431
BfuI	GTATCC	1 cut(s)	448
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	4 cut(s)	42, 138, 183, 262
BlsI	GCNGC	4 cut(s)	43, 139, 184, 263
Bme1390I	CCNGG	3 cut(s)	29, 412, 501
Bme18I	GGWCC	1 cut(s)	115
BmgBI	CACGTC	2 cut(s)	237, 481
BmgT120I	GGNCC	2 cut(s)	30, 115
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	3 cut(s)	29, 412, 501
BmsI	GCATC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	2 cut(s)	123, 522
BpuMI	CCSGG	2 cut(s)	29, 412
BsaBI	GATNNNNATC	1 cut(s)	68
BsaHI	GRCGYC	2 cut(s)	39, 369
BsaJI	CCNNGG	3 cut(s)	262, 396, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 397, 466
Bse1I	ACTGG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	262, 396, 465
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	3 cut(s)	27, 397, 466
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	14, 32, 185
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	28, 412
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	3 cut(s)	27, 397, 466
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	3 cut(s)	14, 32, 185
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	69, 201, 219, 490
BspACI	CCGC	5 cut(s)	42, 85, 182, 262, 264
BspANI	GGCC	3 cut(s)	14, 32, 185
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	536
BspLI	GGNNCC	1 cut(s)	116
BspMI	ACCTGC	2 cut(s)	305, 431
BspPI	GGATC	4 cut(s)	64, 196, 214, 498
BspQI	GCTCTTC	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	492
BssECI	CCNNGG	3 cut(s)	262, 396, 465
BssMI	GATC	4 cut(s)	69, 201, 219, 490
BssNI	GRCGYC	2 cut(s)	39, 369
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	3 cut(s)	307, 364, 527
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	2 cut(s)	39, 369
BstC8I	GCNNGC	6 cut(s)	99, 142, 146, 180, 187, 408
BstDEI	CTNAG	2 cut(s)	34, 162
BstDSI	CCRYGG	2 cut(s)	262, 396
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	4 cut(s)	72, 204, 222, 493
BstMBI	GATC	4 cut(s)	69, 201, 219, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 179, 188
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	3 cut(s)	27, 410, 499
BstSFI	CTRYAG	1 cut(s)	526
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	448
BsuRI	GGCC	3 cut(s)	14, 32, 185
BtgI	CCRYGG	2 cut(s)	262, 396
BtgZI	GCGATG	1 cut(s)	95
BtrI	CACGTC	2 cut(s)	237, 481
BveI	ACCTGC	2 cut(s)	305, 431
Cac8I	GCNNGC	6 cut(s)	99, 142, 146, 180, 187, 408
CciI	TCATGA	1 cut(s)	536
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	30, 115
Cfr42I	CCGCGG	1 cut(s)	265
CseI	GACGC	2 cut(s)	47, 358
Csp6I	GTAC	3 cut(s)	88, 497, 506
CviAII	CATG	4 cut(s)	211, 224, 241, 537
CviQI	GTAC	3 cut(s)	88, 497, 506
DdeI	CTNAG	2 cut(s)	34, 162
DpnI	GATC	4 cut(s)	71, 203, 221, 492
DpnII	GATC	4 cut(s)	69, 201, 219, 490
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	499
FaeI	CATG	4 cut(s)	214, 227, 244, 540
FaiI	YATR	4 cut(s)	212, 225, 242, 538
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	4 cut(s)	210, 223, 240, 536
FauI	CCCGC	1 cut(s)	257
Fnu4HI	GCNGC	4 cut(s)	42, 138, 183, 262
Fsp4HI	GCNGC	4 cut(s)	42, 138, 183, 262
FspBI	CTAG	2 cut(s)	350, 381
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	4 cut(s)	42, 138, 183, 262
GsuI	CTGGAG	2 cut(s)	123, 522
HaeIII	GGCC	3 cut(s)	14, 32, 185
HapII	CCGG	2 cut(s)	28, 412
HgaI	GACGC	2 cut(s)	47, 358
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	2 cut(s)	39, 369
Hin1II	CATG	4 cut(s)	214, 227, 244, 540
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	3 cut(s)	17, 164, 384
HpaII	CCGG	2 cut(s)	28, 412
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	7 cut(s)	119, 155, 163, 392, 427, 466, 478
Hpy188III	TCNNGA	3 cut(s)	196, 381, 537
Hpy8I	GTNNAC	1 cut(s)	360
Hpy99I	CGWCG	5 cut(s)	173, 254, 368, 374, 482
HpyAV	CCTTC	2 cut(s)	4, 387
HpyCH4III	ACNGT	3 cut(s)	307, 364, 527
HpyCH4IV	ACGT	2 cut(s)	236, 480
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 179, 188
HpyF3I	CTNAG	2 cut(s)	34, 162
HpySE526I	ACGT	2 cut(s)	236, 480
Hsp92I	GRCGYC	2 cut(s)	39, 369
Hsp92II	CATG	4 cut(s)	214, 227, 244, 540
HspAI	GCGC	1 cut(s)	189
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	69, 201, 219, 490
LguI	GCTCTTC	1 cut(s)	396
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	350, 381
MaeII	ACGT	2 cut(s)	236, 480
MaeIII	GTNAC	2 cut(s)	301, 317
MalI	GATC	4 cut(s)	71, 203, 221, 492
MboI	GATC	4 cut(s)	69, 201, 219, 490
MboII	GAAGA	3 cut(s)	308, 413, 525
MhlI	GDGCHC	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	3 cut(s)	142, 405, 501
MnlI	CCTC	6 cut(s)	98, 105, 149, 421, 460, 525
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	2 cut(s)	28, 412
MspR9I	CCNGG	3 cut(s)	29, 412, 501
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	38, 179, 188
NciI	CCSGG	2 cut(s)	29, 412
NdeII	GATC	4 cut(s)	69, 201, 219, 490
NlaIII	CATG	4 cut(s)	214, 227, 244, 540
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	317
PagI	TCATGA	1 cut(s)	536
PaqCI	CACCTGC	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	17, 384
PkrI	GCNGC	4 cut(s)	43, 139, 184, 263
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	30, 115
RsaI	GTAC	3 cut(s)	89, 498, 507
RsaNI	GTAC	3 cut(s)	88, 497, 506
SacII	CCGCGG	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	396
SatI	GCNGC	4 cut(s)	42, 138, 183, 262
Sau3AI	GATC	4 cut(s)	69, 201, 219, 490
Sau96I	GGNCC	2 cut(s)	30, 115
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	3 cut(s)	29, 412, 501
SduI	GDGCHC	1 cut(s)	348
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	526
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	115
SsiI	CCGC	5 cut(s)	42, 85, 182, 262, 264
SspMI	CTAG	2 cut(s)	350, 381
StyD4I	CCNGG	3 cut(s)	27, 410, 499
TaaI	ACNGT	3 cut(s)	307, 364, 527
TaiI	ACGT	2 cut(s)	239, 483
TaqI	TCGA	2 cut(s)	372, 493
TatI	WGTACW	1 cut(s)	505
TauI	GCSGC	3 cut(s)	44, 185, 264
TfiI	GAWTC	2 cut(s)	17, 384
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	525
TspGWI	ACGGA	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	380
XspI	CTAG	2 cut(s)	350, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.