Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Reverse (-)

17248497 .. 17248889

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG192700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCCGGCGGCCTGCGCCATCAAGATGATCCACACCATGTTGTTGATCCACGACGACTTGCCGTGCATGGATAATGACGATCTCCGCCGCGGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGACGCTGCAGTTTTGGCGGGCGAAGCGCTTCTCTCCTTCGCGGTCCAGCACCTAGCCTTGTCCACCGTCGGCATCGAGCCTTCTAGAATCATCCGAGCAGTGGAAGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTAGTGGGTCAAGTCGTGGATATCCACTCTGAGGGGTTATCCGACGTGGGACTGGAGCACCTGGAGTACATATCCCTCCACAAAATTGTAGCTCTTCTTGAATGTAAGAAGAAGATAAAAAGGAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

130

Amino Acids

14.14

Weight (kDa)

6.14

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	3 - 115	4.8e-21	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	90, 164
AciI	CCGC	6 cut(s)	8, 85, 88, 90, 140, 164
AclWI	GGATC	2 cut(s)	22, 40
AfaI	GTAC	1 cut(s)	329
AfeI	AGCGCT	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	223, 292
AgsI	TTSAA	1 cut(s)	362
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	2 cut(s)	232, 353
AluI	AGCT	2 cut(s)	232, 353
Alw21I	GWGCWC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	22, 40
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	17, 151
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	46
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	238
BfaI	CTAG	2 cut(s)	176, 207
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	3 cut(s)	9, 88, 129
BlsI	GCNGC	3 cut(s)	10, 89, 130
Bme1390I	CCNGG	2 cut(s)	238, 323
Bme18I	GGWCC	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	238, 323
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	2 cut(s)	335, 344
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 292
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	223, 292
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	115
Bsh1236I	CGCG	2 cut(s)	90, 164
BshFI	GGCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	5, 238
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	223, 292
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	27, 45, 79
BspACI	CCGC	6 cut(s)	8, 85, 88, 90, 140, 164
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	2 cut(s)	90, 164
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	2 cut(s)	22, 40
BspQI	GCTCTTC	2 cut(s)	222, 360
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	3 cut(s)	27, 45, 79
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	222, 360
BstC8I	GCNNGC	4 cut(s)	6, 13, 142, 234
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	2 cut(s)	90, 164
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	17, 151
BstKTI	GATC	3 cut(s)	30, 48, 82
BstMBI	GATC	3 cut(s)	27, 45, 79
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 137, 146
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	236, 321
BstSFI	CTRYAG	1 cut(s)	129
BstUI	CGCG	2 cut(s)	90, 164
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	88
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	4 cut(s)	6, 13, 142, 234
CfoI	GCGC	2 cut(s)	17, 151
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	166
Cfr42I	CCGCGG	1 cut(s)	91
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	37, 67
CviJI	RGCY	7 cut(s)	11, 97, 179, 202, 232, 353, 389
CviKI_1	RGCY	7 cut(s)	11, 97, 179, 202, 232, 353, 389
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	3 cut(s)	29, 47, 81
DpnII	GATC	3 cut(s)	27, 45, 79
Eam1104I	CTCTTC	2 cut(s)	222, 360
EarI	CTCTTC	2 cut(s)	222, 360
EciI	GGCGGA	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	166
Eco47III	AGCGCT	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	321
EcoRV	GATATC	1 cut(s)	283
FaeI	CATG	2 cut(s)	40, 70
FaiI	YATR	3 cut(s)	38, 68, 332
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	2 cut(s)	36, 66
FauI	CCCGC	2 cut(s)	83, 133
Fnu4HI	GCNGC	3 cut(s)	9, 88, 129
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	3 cut(s)	9, 88, 129
FspBI	CTAG	2 cut(s)	176, 207
GlaI	GCGC	2 cut(s)	16, 150
GluI	GCNGC	3 cut(s)	9, 88, 129
GsuI	CTGGAG	2 cut(s)	335, 344
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	2 cut(s)	5, 238
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	2 cut(s)	17, 151
Hin1II	CATG	2 cut(s)	40, 70
Hin6I	GCGC	2 cut(s)	15, 149
HinP1I	GCGC	2 cut(s)	15, 149
HinfI	GANTC	1 cut(s)	210
HpaII	CCGG	2 cut(s)	5, 238
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	4 cut(s)	218, 253, 292, 304
Hpy188III	TCNNGA	3 cut(s)	22, 207, 359
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	3 cut(s)	56, 194, 308
HpyAV	CCTTC	2 cut(s)	169, 213
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	66, 131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 137, 146
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	40, 70
HspAI	GCGC	2 cut(s)	15, 149
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	27, 45, 79
LguI	GCTCTTC	2 cut(s)	222, 360
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	7 cut(s)	18, 25, 182, 251, 299, 308, 335
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	2 cut(s)	176, 207
MaeII	ACGT	1 cut(s)	306
MalI	GATC	3 cut(s)	29, 47, 81
MboI	GATC	3 cut(s)	27, 45, 79
MboII	GAAGA	5 cut(s)	134, 239, 347, 382, 385
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	1 cut(s)	345
MmeI	TCCRAC	2 cut(s)	231, 327
MnlI	CCTC	3 cut(s)	247, 286, 347
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	2 cut(s)	5, 238
MspR9I	CCNGG	2 cut(s)	238, 323
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	2 cut(s)	90, 164
MwoI	GCNNNNNNNGC	3 cut(s)	14, 137, 146
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	3 cut(s)	27, 45, 79
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	40, 70
PciSI	GCTCTTC	2 cut(s)	222, 360
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	210
PkrI	GCNGC	3 cut(s)	10, 89, 130
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	133
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	23
SacII	CCGCGG	1 cut(s)	91
SapI	GCTCTTC	2 cut(s)	222, 360
SatI	GCNGC	3 cut(s)	9, 88, 129
Sau3AI	GATC	3 cut(s)	27, 45, 79
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	238, 323
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	6 cut(s)	114, 177, 234, 309, 324, 355
SfaNI	GCATC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	129
Sfr303I	CCGCGG	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	6 cut(s)	8, 85, 88, 90, 140, 164
SspMI	CTAG	2 cut(s)	176, 207
StyD4I	CCNGG	2 cut(s)	236, 321
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	345
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	2 cut(s)	11, 90
TfiI	GAWTC	1 cut(s)	210
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	1 cut(s)	128
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	166
XbaI	TCTAGA	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	2 cut(s)	176, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.