Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

31448614 .. 31448874

Gene Structure 261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG282000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTGGAGAAGGCCGAGTCCGTCAACAGGGCCTTAGACACCGCCGTTTCGATGAAAGACCCGATTACGATCCACGAAGCGGTGCGGTACTCTTTGCTCGCCGGAGGCAAGAGGGTCCGACCTGTTCTGTGTGTCGCGGCGTGCGAGCTCGTCAGAGGGTCTGAGTCCTTCGCTATGCCGGCGGCCTGCGCCGTCGAGATGATCTACACCATGTCGTTGATCCACGACGACTTGCCGTGCATGGATAACGACGACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

86

Amino Acids

9.36

Weight (kDa)

4.77

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	24 - 86	4.1e-13	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	137
AciI	CCGC	5 cut(s)	42, 80, 85, 137, 182
AclWI	GGATC	2 cut(s)	64, 214
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	27, 79
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw21I	GWGCWC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	64, 214
AoxI	GGCC	3 cut(s)	12, 30, 183
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	30, 115
AvaII	GGWCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BceAI	ACGGC	3 cut(s)	29, 176, 220
BisI	GCNGC	2 cut(s)	138, 183
BlsI	GCNGC	2 cut(s)	139, 184
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	30, 115
BmiI	GGNNCC	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 79
Bse118I	RCCGGY	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	68
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	27, 79
BseMII	CTCAG	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	14, 32, 185
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	102, 179
BslI	CCNNNNNNNGG	2 cut(s)	27, 79
BsnI	GGCC	3 cut(s)	14, 32, 185
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	69, 201, 219
BspACI	CCGC	5 cut(s)	42, 80, 85, 137, 182
BspANI	GGCC	3 cut(s)	14, 32, 185
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	64, 214
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssMI	GATC	3 cut(s)	69, 201, 219
BstC8I	GCNNGC	5 cut(s)	99, 142, 146, 180, 187
BstDEI	CTNAG	2 cut(s)	34, 162
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	3 cut(s)	72, 204, 222
BstMBI	GATC	3 cut(s)	69, 201, 219
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 188
BstUI	CGCG	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	14, 32, 185
Cac8I	GCNNGC	5 cut(s)	99, 142, 146, 180, 187
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	30, 115
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	211, 241
CviJI	RGCY	4 cut(s)	14, 32, 148, 185
CviKI_1	RGCY	4 cut(s)	14, 32, 148, 185
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	34, 162
DpnI	GATC	3 cut(s)	71, 203, 221
DpnII	GATC	3 cut(s)	69, 201, 219
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	2 cut(s)	214, 244
FaiI	YATR	3 cut(s)	176, 212, 242
FatI	CATG	2 cut(s)	210, 240
Fnu4HI	GCNGC	2 cut(s)	138, 183
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	138, 183
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	2 cut(s)	138, 183
HaeIII	GGCC	3 cut(s)	14, 32, 185
HapII	CCGG	2 cut(s)	102, 179
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	214, 244
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	17, 164
HpaII	CCGG	2 cut(s)	102, 179
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	4 cut(s)	119, 155, 163, 260
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	3 cut(s)	197, 230, 254
HpyAV	CCTTC	2 cut(s)	4, 178
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 188
HpyF3I	CTNAG	2 cut(s)	34, 162
Hsp92II	CATG	2 cut(s)	214, 244
HspAI	GCGC	1 cut(s)	189
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	69, 201, 219
LpnPI	CCDG	5 cut(s)	13, 115, 135, 192, 199
MalI	GATC	3 cut(s)	71, 203, 221
MboI	GATC	3 cut(s)	69, 201, 219
MhlI	GDGCHC	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	26, 173
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	3 cut(s)	98, 105, 149
MroNI	GCCGGC	1 cut(s)	178
MspI	CCGG	2 cut(s)	102, 179
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	179, 188
NaeI	GCCGGC	1 cut(s)	180
NdeII	GATC	3 cut(s)	69, 201, 219
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	214, 244
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdiI	GCCGGC	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	139, 184
PleI	GAGTC	2 cut(s)	25, 172
PpsI	GAGTC	2 cut(s)	25, 172
Psp124BI	GAGCTC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	30, 115
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	150
SatI	GCNGC	2 cut(s)	138, 183
Sau3AI	GATC	3 cut(s)	69, 201, 219
Sau96I	GGNCC	2 cut(s)	30, 115
SchI	GAGTC	2 cut(s)	26, 173
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	3 cut(s)	124, 150, 258
SinI	GGWCC	1 cut(s)	115
SsiI	CCGC	5 cut(s)	42, 80, 85, 137, 182
SstI	GAGCTC	1 cut(s)	150
TaqI	TCGA	2 cut(s)	50, 195
TauI	GCSGC	2 cut(s)	140, 185
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.