Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Reverse (-)

40896802 .. 40908680

Gene Structure 11879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG315300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCCGGCGGCCTGCGCCGTCAAGATGATCCACACCATGTTGTTGATCCACGACGACTTGCCGTGCATGGAAAATGACGATCTCCGCCGCGGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGACGTTGCAGTTTTGGCGGGCGAAGCGCTTCTCTCCTTCGCGGTCGAGCACCTAGCCTTGTCCACCGTCGGCATCGAGCCTTCTAGAATCATCCGAGCCTTGGAAGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTAGCGGGTCAAGTCGTGGATATCCACTCTGAGGGGTTATCCGACGTGGGACTGGAGCACCTGGACTGCAAAGCCTCGAGCTCAGAGCAACTGGTTGAATTCTTTGAAGGAAACAAGTTGACCGTCAAGATGAAATACATGGGTGCCCATAGTAGATTGAAGAATCTCCAGTTCTTGACGCTGGCGGGCTTGGCACTGCATCAAGGTTTCTTTGGCGGTGCATGCCTTGGCGGTTCATCAAGATTGCACTTTGGCGAAGCTTCAAGATCGGTGCCTGTAGACGCTGGGTTATGGGCAGACGCAGCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

190

Amino Acids

20.26

Weight (kDa)

5.53

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	3 - 103	7.1e-18	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	404, 532
AccI	GTMKAC	1 cut(s)	540
AccII	CGCG	2 cut(s)	90, 164
AclWI	GGATC	2 cut(s)	22, 40
AcsI	RAATTY	1 cut(s)	359
AfeI	AGCGCT	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	223, 292
AgsI	TTSAA	4 cut(s)	359, 368, 421, 525
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	3 cut(s)	232, 342, 521
AluI	AGCT	3 cut(s)	232, 342, 521
Alw21I	GWGCWC	3 cut(s)	174, 321, 344
AlwI	GGATC	2 cut(s)	22, 40
Ama87I	CYCGRG	1 cut(s)	337
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	17, 151
AsuC2I	CCSGG	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	409
BanI	GGYRCC	2 cut(s)	404, 532
BanII	GRGCYC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	3 cut(s)	174, 321, 344
BceAI	ACGGC	2 cut(s)	2, 46
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	238
BfaI	CTAG	2 cut(s)	176, 207
BfmI	CTRYAG	1 cut(s)	537
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	3 cut(s)	9, 88, 564
BlsI	GCNGC	3 cut(s)	10, 89, 565
Bme1390I	CCNGG	2 cut(s)	238, 323
BmeT110I	CYCGRG	1 cut(s)	337
BmgBI	CACGTC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	406, 534
BmrFI	CCNGG	2 cut(s)	238, 323
BmsI	GCATC	2 cut(s)	204, 469
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	2 cut(s)	335, 413
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	3 cut(s)	88, 222, 487
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 292
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	3 cut(s)	318, 357, 430
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	3 cut(s)	88, 222, 487
BseGI	GGATG	2 cut(s)	213, 566
BseLI	CCNNNNNNNGG	2 cut(s)	223, 292
BseMII	CTCAG	2 cut(s)	282, 357
BseNI	ACTGG	3 cut(s)	318, 357, 430
BseSI	GKGCMC	1 cut(s)	409
BseYI	CCCAGC	1 cut(s)	545
Bsh1236I	CGCG	2 cut(s)	90, 164
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	11
BshNI	GGYRCC	2 cut(s)	404, 532
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	3 cut(s)	174, 321, 344
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	5, 238
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	223, 292
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	337
Bsp1286I	GDGCHC	4 cut(s)	174, 321, 344, 409
Bsp143I	GATC	4 cut(s)	27, 45, 79, 527
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	283, 356
BspFNI	CGCG	2 cut(s)	90, 164
BspLI	GGNNCC	2 cut(s)	406, 534
BspPI	GGATC	2 cut(s)	22, 40
BspQI	GCTCTTC	1 cut(s)	222
BspT107I	GGYRCC	2 cut(s)	404, 532
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	3 cut(s)	318, 357, 430
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	88, 222, 487
BssMI	GATC	4 cut(s)	27, 45, 79, 527
BssT1I	CCWWGG	2 cut(s)	222, 487
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	190, 385
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	7 cut(s)	6, 13, 142, 234, 444, 448, 484
BstDEI	CTNAG	2 cut(s)	291, 343
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	213, 566
BstFNI	CGCG	2 cut(s)	90, 164
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	17, 151
BstKTI	GATC	4 cut(s)	30, 48, 82, 530
BstMBI	GATC	4 cut(s)	27, 45, 79, 527
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 137, 146, 452, 483, 563
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	486
BstSCI	CCNGG	2 cut(s)	236, 321
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	2 cut(s)	90, 164
BstV2I	GAAGAC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	88
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	213, 566
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	455
Cac8I	GCNNGC	7 cut(s)	6, 13, 142, 234, 444, 448, 484
CfoI	GCGC	2 cut(s)	17, 151
Cfr10I	RCCGGY	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	91
CseI	GACGC	2 cut(s)	448, 551
CviAII	CATG	4 cut(s)	37, 67, 400, 483
DdeI	CTNAG	2 cut(s)	291, 343
DpnI	GATC	4 cut(s)	29, 47, 81, 529
DpnII	GATC	4 cut(s)	27, 45, 79, 527
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	222, 487
Eco24I	GRGCYC	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	321
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	222, 487
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	2 cut(s)	222, 487
FaeI	CATG	4 cut(s)	40, 70, 403, 486
FaiI	YATR	6 cut(s)	38, 68, 401, 411, 484, 553
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	4 cut(s)	36, 66, 399, 482
FauI	CCCGC	4 cut(s)	83, 133, 259, 439
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	3 cut(s)	9, 88, 564
FokI	GGATG	2 cut(s)	200, 553
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	3 cut(s)	9, 88, 564
FspBI	CTAG	2 cut(s)	176, 207
GlaI	GCGC	2 cut(s)	16, 150
GluI	GCNGC	3 cut(s)	9, 88, 564
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	335, 413
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	2 cut(s)	5, 238
HgaI	GACGC	2 cut(s)	448, 551
HhaI	GCGC	2 cut(s)	17, 151
Hin1II	CATG	4 cut(s)	40, 70, 403, 486
Hin6I	GCGC	2 cut(s)	15, 149
HinP1I	GCGC	2 cut(s)	15, 149
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	2 cut(s)	210, 424
HpaII	CCGG	2 cut(s)	5, 238
Hpy166II	GTNNAC	3 cut(s)	186, 381, 541
Hpy188I	TCNGA	5 cut(s)	218, 253, 292, 304, 346
Hpy188III	TCNNGA	7 cut(s)	22, 207, 388, 436, 501, 525, 570
Hpy8I	GTNNAC	3 cut(s)	186, 381, 541
Hpy99I	CGWCG	3 cut(s)	56, 194, 308
HpyAV	CCTTC	3 cut(s)	169, 213, 362
HpyCH4III	ACNGT	2 cut(s)	190, 385
HpyCH4IV	ACGT	2 cut(s)	126, 306
HpyCH4V	TGCA	6 cut(s)	66, 131, 330, 460, 482, 508
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 137, 146, 452, 483, 563
HpyF3I	CTNAG	2 cut(s)	291, 343
HpySE526I	ACGT	2 cut(s)	126, 306
Hsp92II	CATG	4 cut(s)	40, 70, 403, 486
HspAI	GCGC	2 cut(s)	15, 149
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	27, 45, 79, 527
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	316
LweI	GCATC	2 cut(s)	204, 469
MaeI	CTAG	2 cut(s)	176, 207
MaeII	ACGT	2 cut(s)	126, 306
MalI	GATC	4 cut(s)	29, 47, 81, 529
MboI	GATC	4 cut(s)	27, 45, 79, 527
MboII	GAAGA	3 cut(s)	134, 239, 433
MhlI	GDGCHC	4 cut(s)	174, 321, 344, 409
MluCI	AATT	1 cut(s)	359
MmeI	TCCRAC	2 cut(s)	231, 327
MnlI	CCTC	3 cut(s)	247, 286, 346
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	2 cut(s)	5, 238
MspR9I	CCNGG	2 cut(s)	238, 323
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	2 cut(s)	90, 164
MwoI	GCNNNNNNNGC	6 cut(s)	14, 137, 146, 452, 483, 563
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	4 cut(s)	27, 45, 79, 527
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	40, 70, 403, 486
NlaIV	GGNNCC	2 cut(s)	406, 534
NspI	RCATGY	1 cut(s)	486
PaeI	GCATGC	1 cut(s)	486
PaeR7I	CTCGAG	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	210, 424
PkrI	GCNGC	3 cut(s)	10, 89, 565
Psp124BI	GAGCTC	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	406, 534
PspXI	VCTCGAGB	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	344
SacII	CCGCGG	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	222
SatI	GCNGC	3 cut(s)	9, 88, 564
Sau3AI	GATC	4 cut(s)	27, 45, 79, 527
ScrFI	CCNGG	2 cut(s)	238, 323
SduI	GDGCHC	4 cut(s)	174, 321, 344, 409
SetI	ASST	9 cut(s)	114, 129, 177, 234, 309, 324, 344, 469, 523
SfaNI	GCATC	2 cut(s)	204, 469
SfcI	CTRYAG	1 cut(s)	537
Sfr274I	CTCGAG	1 cut(s)	337
Sfr303I	CCGCGG	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	91
SlaI	CTCGAG	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SphI	GCATGC	1 cut(s)	486
Sse9I	AATT	1 cut(s)	359
SspMI	CTAG	2 cut(s)	176, 207
SstI	GAGCTC	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	236, 321
StyI	CCWWGG	2 cut(s)	222, 487
TaaI	ACNGT	2 cut(s)	190, 385
TaiI	ACGT	2 cut(s)	129, 309
TaqI	TCGA	3 cut(s)	168, 198, 338
TasI	AATT	1 cut(s)	359
TauI	GCSGC	2 cut(s)	11, 90
TfiI	GAWTC	2 cut(s)	210, 424
TscAI	CASTG	1 cut(s)	462
TseI	GCWGC	1 cut(s)	563
TspDTI	ATGAA	2 cut(s)	407, 486
TspRI	CASTG	1 cut(s)	462
XapI	RAATTY	1 cut(s)	359
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	1 cut(s)	486
XhoI	CTCGAG	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	540
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	2 cut(s)	176, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.