Rw6G008710

Belongs to the FPP GGPP synthase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
14723922 .. 14731181
7260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008710.1

Sequence Viewer

Length: 1137 bp
ATGATAAGAGAAAAGATTAATGAAGGTGATATTAATATTGATCCTGATATTTGCGCATTGGCAGAAGGACCAGACAATGAAGCCAAACGTTACAAAAATTTGGTGGCTGACCCTGGATTGTATCCTATTGATGTCAAGGATTGGCGGCATTTTGACAAGGACGACAGCCATCAAAGGGCTTGGACATGTATTGAGAAATATGCCTTCAAAAAACTTGTAGATCGCTGGAAGCATCACAAGTCAGAGTTGAAGAAATTGTATTGGTTGCCCAATCAAGGGACTGAAGAACGTATTTGCAGCCCTGATAATGCCATTGACAGAGATCAATGGATAAGATTTGTTACTCATTTAGATGATGAGGATACTAAGACCAAGGCTGCCATAAATGTAAGTAATCGATCGCAGCGGGTAATGCATCACAGTACATGCACAGGGACTTTTCCAGCAGTTGTTTATGAATTGCAAGATTTGGAGAAGGCTGAAGAGGAGAGAAAGAAGTTAAATGTTGATATTACTCCACAAGTTAGAGAAGACATCTATGCAGAAGTACTTGGGCCAGAGAAGCGTAACCGAGTGAGAAGACTTGGAGCGGGAGTACGGTGGCGTGATGTTCCATACATTCACACTGAAAAAAGAAGTATCTCAGCCACTATGGAAGCAATGAAAGCAACAATTGAGGAACAACGCTTGGAGACTGCAAGATTGAGGACGCGCGAGATCGTCAGAGGGTCTAAGTCAGTCACCATGCCGGCGGCCTGCGCCGTCAAGATGATCCACACCAAGTTGTTGATCCACGACGACTTGCCGTGCATGGATAATGACGATCTCCGCCGCGGGAAGCCCACCAACCACAAGGTTTTCTGCGAAGACGTTGCAGTTTTGGCCGGCGAAGCGCTTCTCTCCTTCGCGGTCGAGCACCTAGCCTTGTCCACCGTCGGCATCGAGCCTTCTAGAATCGTCCGAGCAGTGGAAGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTAGAGGGTCAAGTCGTGGATATCCACTCTGAGGGGTTATCCGACGTGGGACTGGAGCACATGGAGTACATACACCTCCACAAAATTGTAGCTCTTCTTGAATGTAAGAAGAAGATAAAAAGGAAAGCCTGA

Protein Analysis

378

Amino Acids

43.32

Weight (kDa)

6.61

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 248 - 363 1.2e-18 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 590
AccII CGCG 4 cut(s) 712, 714, 834, 908
AciI CCGC 8 cut(s) 145, 406, 590, 752, 829, 832, 834, 908
AclI AACGTT 1 cut(s) 88
AclWI GGATC 3 cut(s) 35, 766, 784
AcoI YGGCCR 1 cut(s) 882
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 2 cut(s) 303, 501
AfaI GTAC 4 cut(s) 424, 549, 597, 1073
AfeI AGCGCT 1 cut(s) 894
AfiI CCNNNNNNNGG 5 cut(s) 175, 275, 276, 967, 1036
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 3 cut(s) 208, 250, 1106
AjiI CACGTC 1 cut(s) 1051
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 2 cut(s) 976, 1097
AluI AGCT 2 cut(s) 976, 1097
Alw21I GWGCWC 2 cut(s) 918, 1065
Alw26I GTCTC 1 cut(s) 686
AlwI GGATC 3 cut(s) 35, 766, 784
Aor51HI AGCGCT 1 cut(s) 894
AoxI GGCC 3 cut(s) 554, 753, 882
ApeKI GCWGC 3 cut(s) 297, 377, 403
ApoI RAATTY 1 cut(s) 97
AseI ATTAAT 2 cut(s) 18, 33
Asp700I GAANNNNTTC 1 cut(s) 894
AspLEI GCGC 4 cut(s) 56, 714, 761, 895
AspS9I GGNCC 2 cut(s) 68, 554
AsuC2I CCSGG 1 cut(s) 982
AsuHPI GGTGA 2 cut(s) 38, 733
AvaII GGWCC 1 cut(s) 68
BbsI GAAGAC 3 cut(s) 537, 586, 873
Bbv12I GWGCWC 2 cut(s) 918, 1065
BbvI GCAGC 3 cut(s) 309, 364, 415
BccI CCATC 1 cut(s) 177
BceAI ACGGC 2 cut(s) 746, 790
BcgI CGANNNNNNTGC 2 cut(s) 854, 888
BciT130I CCWGG 1 cut(s) 114
BciVI GTATCC 2 cut(s) 132, 355
BcnI CCSGG 1 cut(s) 982
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 2 cut(s) 920, 951
BfoI RGCGCY 1 cut(s) 896
BfuI GTATCC 2 cut(s) 132, 355
BisI GCNGC 6 cut(s) 146, 298, 378, 404, 753, 832
BlsI GCNGC 6 cut(s) 147, 299, 379, 405, 754, 833
BmcAI AGTACT 1 cut(s) 549
Bme1390I CCNGG 2 cut(s) 114, 982
Bme18I GGWCC 1 cut(s) 68
BmgBI CACGTC 1 cut(s) 1051
BmgT120I GGNCC 2 cut(s) 68, 554
BmrFI CCNGG 2 cut(s) 114, 982
BmsI GCATC 3 cut(s) 241, 424, 948
BpiI GAAGAC 3 cut(s) 537, 586, 873
BpmI CTGGAG 1 cut(s) 1079
BpuMI CCSGG 1 cut(s) 982
Bsa29I ATCGAT 1 cut(s) 397
BsaJI CCNNGG 3 cut(s) 112, 372, 832
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 5 cut(s) 175, 275, 276, 967, 1036
Bse118I RCCGGY 2 cut(s) 748, 884
Bse1I ACTGG 1 cut(s) 1062
Bse3DI GCAATG 1 cut(s) 666
BseBI CCWGG 1 cut(s) 114
BseCI ATCGAT 1 cut(s) 397
BseDI CCNNGG 3 cut(s) 112, 372, 832
BseLI CCNNNNNNNGG 5 cut(s) 175, 275, 276, 967, 1036
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 2 cut(s) 657, 1026
BseNI ACTGG 1 cut(s) 1062
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 3 cut(s) 309, 364, 415
Bsh1236I CGCG 4 cut(s) 712, 714, 834, 908
Bsh1285I CGRYCG 2 cut(s) 401, 912
BshFI GGCC 3 cut(s) 556, 755, 884
BshVI ATCGAT 1 cut(s) 397
BsiEI CGRYCG 2 cut(s) 401, 912
BsiHKAI GWGCWC 2 cut(s) 918, 1065
BsiSI CCGG 3 cut(s) 749, 885, 982
BslFI GGGAC 3 cut(s) 292, 448, 1068
BslI CCNNNNNNNGG 5 cut(s) 175, 275, 276, 967, 1036
BsmAI GTCTC 1 cut(s) 686
BsmFI GGGAC 3 cut(s) 292, 448, 1068
BsnI GGCC 3 cut(s) 556, 755, 884
Bsp1286I GDGCHC 2 cut(s) 918, 1065
Bsp143I GATC 8 cut(s) 40, 220, 322, 398, 717, 771, 789, 823
BspACI CCGC 8 cut(s) 145, 406, 590, 752, 829, 832, 834, 908
BspANI GGCC 3 cut(s) 556, 755, 884
BspCNI CTCAG 2 cut(s) 656, 1027
BspDI ATCGAT 1 cut(s) 397
BspFNI CGCG 4 cut(s) 712, 714, 834, 908
BspPI GGATC 3 cut(s) 35, 766, 784
BspQI GCTCTTC 2 cut(s) 966, 1104
BsrBI CCGCTC 1 cut(s) 590
BsrDI GCAATG 1 cut(s) 666
BsrFI RCCGGY 2 cut(s) 748, 884
BsrI ACTGG 1 cut(s) 1062
BssAI RCCGGY 2 cut(s) 748, 884
BssECI CCNNGG 3 cut(s) 112, 372, 832
BssMI GATC 8 cut(s) 40, 220, 322, 398, 717, 771, 789, 823
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 422, 600, 934
Bst6I CTCTTC 3 cut(s) 477, 966, 1104
BstC8I GCNNGC 4 cut(s) 750, 757, 886, 978
BstDEI CTNAG 4 cut(s) 366, 643, 732, 1035
BstDSI CCRYGG 1 cut(s) 832
BstFNI CGCG 4 cut(s) 712, 714, 834, 908
BstH2I RGCGCY 1 cut(s) 896
BstHHI GCGC 4 cut(s) 56, 714, 761, 895
BstKTI GATC 8 cut(s) 43, 223, 325, 401, 720, 774, 792, 826
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 8 cut(s) 40, 220, 322, 398, 717, 771, 789, 823
BstMCI CGRYCG 2 cut(s) 401, 912
BstMWI GCNNNNNNNGC 6 cut(s) 412, 562, 665, 758, 881, 890
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 2 cut(s) 189, 429
BstSCI CCNGG 2 cut(s) 112, 980
BstUI CGCG 4 cut(s) 712, 714, 834, 908
BstV1I GCAGC 3 cut(s) 309, 364, 415
BstV2I GAAGAC 3 cut(s) 537, 586, 873
Bsu15I ATCGAT 1 cut(s) 397
BsuI GTATCC 2 cut(s) 132, 355
BsuRI GGCC 3 cut(s) 556, 755, 884
BsuTUI ATCGAT 1 cut(s) 397
BtgI CCRYGG 1 cut(s) 832
BtrI CACGTC 1 cut(s) 1051
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 2 cut(s) 624, 972
Cac8I GCNNGC 4 cut(s) 750, 757, 886, 978
CfoI GCGC 4 cut(s) 56, 714, 761, 895
Cfr10I RCCGGY 2 cut(s) 748, 884
Cfr13I GGNCC 2 cut(s) 68, 554
Cfr42I CCGCGG 1 cut(s) 835
ClaI ATCGAT 1 cut(s) 397
CseI GACGC 1 cut(s) 718
Csp6I GTAC 4 cut(s) 423, 548, 596, 1072
CviAII CATG 5 cut(s) 186, 426, 745, 811, 1066
CviQI GTAC 4 cut(s) 423, 548, 596, 1072
DdeI CTNAG 4 cut(s) 366, 643, 732, 1035
DpnI GATC 8 cut(s) 42, 222, 324, 400, 719, 773, 791, 825
DpnII GATC 8 cut(s) 40, 220, 322, 398, 717, 771, 789, 823
EaeI YGGCCR 1 cut(s) 882
Eam1104I CTCTTC 3 cut(s) 477, 966, 1104
EarI CTCTTC 3 cut(s) 477, 966, 1104
EciI GGCGGA 1 cut(s) 818
Eco130I CCWWGG 1 cut(s) 372
Eco32I GATATC 1 cut(s) 1027
Eco47I GGWCC 1 cut(s) 68
Eco47III AGCGCT 1 cut(s) 894
Eco57I CTGAAG 2 cut(s) 303, 501
EcoRII CCWGG 1 cut(s) 112
EcoRV GATATC 1 cut(s) 1027
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 5 cut(s) 189, 429, 748, 814, 1069
FaqI GGGAC 3 cut(s) 292, 448, 1068
FatI CATG 5 cut(s) 185, 425, 744, 810, 1065
FauI CCCGC 3 cut(s) 399, 583, 827
Fnu4HI GCNGC 6 cut(s) 146, 298, 378, 404, 753, 832
Fsp4HI GCNGC 6 cut(s) 146, 298, 378, 404, 753, 832
FspBI CTAG 2 cut(s) 920, 951
FspI TGCGCA 1 cut(s) 55
GlaI GCGC 4 cut(s) 55, 713, 760, 894
GluI GCNGC 6 cut(s) 146, 298, 378, 404, 753, 832
GsuI CTGGAG 1 cut(s) 1079
HaeII RGCGCY 1 cut(s) 896
HaeIII GGCC 3 cut(s) 556, 755, 884
HapII CCGG 3 cut(s) 749, 885, 982
HgaI GACGC 1 cut(s) 718
HhaI GCGC 4 cut(s) 56, 714, 761, 895
Hin1II CATG 5 cut(s) 189, 429, 748, 814, 1069
Hin6I GCGC 4 cut(s) 54, 712, 759, 893
HinP1I GCGC 4 cut(s) 54, 712, 759, 893
HinfI GANTC 1 cut(s) 954
HpaII CCGG 3 cut(s) 749, 885, 982
HphI GGTGA 2 cut(s) 38, 733
Hpy166II GTNNAC 1 cut(s) 930
Hpy188I TCNGA 6 cut(s) 244, 725, 962, 997, 1036, 1048
Hpy188III TCNNGA 4 cut(s) 44, 766, 951, 1103
Hpy8I GTNNAC 1 cut(s) 930
Hpy99I CGWCG 3 cut(s) 800, 938, 1052
HpyAV CCTTC 6 cut(s) 17, 59, 214, 469, 913, 957
HpyCH4III ACNGT 3 cut(s) 422, 600, 934
HpyCH4IV ACGT 4 cut(s) 88, 289, 870, 1050
HpyCH4V TGCA 8 cut(s) 297, 415, 429, 463, 542, 698, 810, 875
HpyF10VI GCNNNNNNNGC 6 cut(s) 412, 562, 665, 758, 881, 890
HpyF3I CTNAG 4 cut(s) 366, 643, 732, 1035
HpySE526I ACGT 4 cut(s) 88, 289, 870, 1050
Hsp92II CATG 5 cut(s) 189, 429, 748, 814, 1069
HspAI GCGC 4 cut(s) 54, 712, 759, 893
KroI GCCGGC 2 cut(s) 748, 884
KroNI GCCGGC 2 cut(s) 750, 886
KspI CCGCGG 1 cut(s) 835
Kzo9I GATC 8 cut(s) 40, 220, 322, 398, 717, 771, 789, 823
LguI GCTCTTC 2 cut(s) 966, 1104
LmnI GCTCC 2 cut(s) 587, 1060
Lsp1109I GCAGC 3 cut(s) 309, 364, 415
LweI GCATC 3 cut(s) 241, 424, 948
MaeI CTAG 2 cut(s) 920, 951
MaeII ACGT 4 cut(s) 88, 289, 870, 1050
MaeIII GTNAC 4 cut(s) 89, 340, 566, 739
MalI GATC 8 cut(s) 42, 222, 324, 400, 719, 773, 791, 825
MbiI CCGCTC 1 cut(s) 590
MboI GATC 8 cut(s) 40, 220, 322, 398, 717, 771, 789, 823
MfeI CAATTG 1 cut(s) 672
MhlI GDGCHC 2 cut(s) 918, 1065
MluCI AATT 5 cut(s) 97, 254, 458, 672, 1089
MmeI TCCRAC 2 cut(s) 975, 1071
MnlI CCTC 9 cut(s) 352, 478, 670, 699, 719, 991, 1003, 1030, 1091
Mph1103I ATGCAT 1 cut(s) 417
MroNI GCCGGC 2 cut(s) 748, 884
MroXI GAANNNNTTC 1 cut(s) 894
MseI TTAA 3 cut(s) 18, 33, 500
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 2 cut(s) 406, 834
MspI CCGG 3 cut(s) 749, 885, 982
MspR9I CCNGG 2 cut(s) 114, 982
MunI CAATTG 1 cut(s) 672
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 4 cut(s) 712, 714, 834, 908
MwoI GCNNNNNNNGC 6 cut(s) 412, 562, 665, 758, 881, 890
NaeI GCCGGC 2 cut(s) 750, 886
NciI CCSGG 1 cut(s) 982
NdeII GATC 8 cut(s) 40, 220, 322, 398, 717, 771, 789, 823
NgoMIV GCCGGC 2 cut(s) 748, 884
NlaIII CATG 5 cut(s) 189, 429, 748, 814, 1069
NmuCI GTSAC 1 cut(s) 739
NsbI TGCGCA 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 2 cut(s) 189, 429
PciI ACATGT 1 cut(s) 185
PciSI GCTCTTC 2 cut(s) 966, 1104
PdiI GCCGGC 2 cut(s) 750, 886
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 1 cut(s) 954
PkrI GCNGC 6 cut(s) 147, 299, 379, 405, 754, 833
Ple19I CGATCG 1 cut(s) 401
PscI ACATGT 1 cut(s) 185
PshBI ATTAAT 2 cut(s) 18, 33
Psp1406I AACGTT 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspPI GGNCC 2 cut(s) 68, 554
PvuI CGATCG 1 cut(s) 401
RsaI GTAC 4 cut(s) 424, 549, 597, 1073
RsaNI GTAC 4 cut(s) 423, 548, 596, 1072
RseI CAYNNNNRTG 1 cut(s) 351
SacII CCGCGG 1 cut(s) 835
SapI GCTCTTC 2 cut(s) 966, 1104
SaqAI TTAA 3 cut(s) 18, 33, 500
SatI GCNGC 6 cut(s) 146, 298, 378, 404, 753, 832
Sau3AI GATC 8 cut(s) 40, 220, 322, 398, 717, 771, 789, 823
Sau96I GGNCC 2 cut(s) 68, 554
ScaI AGTACT 1 cut(s) 549
ScrFI CCNGG 2 cut(s) 114, 982
SduI GDGCHC 2 cut(s) 918, 1065
SfaNI GCATC 3 cut(s) 241, 424, 948
Sfr303I CCGCGG 1 cut(s) 835
SgrBI CCGCGG 1 cut(s) 835
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 351
Sse9I AATT 5 cut(s) 97, 254, 458, 672, 1089
SsiI CCGC 8 cut(s) 145, 406, 590, 752, 829, 832, 834, 908
SspI AATATT 1 cut(s) 37
SspMI CTAG 2 cut(s) 920, 951
StyD4I CCNGG 2 cut(s) 112, 980
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 3 cut(s) 422, 600, 934
TaiI ACGT 4 cut(s) 91, 292, 873, 1053
TaqI TCGA 3 cut(s) 397, 912, 942
TasI AATT 5 cut(s) 97, 254, 458, 672, 1089
TatI WGTACW 3 cut(s) 422, 547, 1071
TauI GCSGC 3 cut(s) 148, 755, 834
TfiI GAWTC 1 cut(s) 954
Tru1I TTAA 3 cut(s) 18, 33, 500
Tru9I TTAA 3 cut(s) 18, 33, 500
TscAI CASTG 2 cut(s) 631, 972
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 3 cut(s) 297, 377, 403
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 4 cut(s) 36, 93, 471, 677
TspRI CASTG 2 cut(s) 631, 972
VpaK11BI GGWCC 1 cut(s) 68
VspI ATTAAT 2 cut(s) 18, 33
XapI RAATTY 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 950
XceI RCATGY 2 cut(s) 189, 429
XmnI GAANNNNTTC 1 cut(s) 894
XspI CTAG 2 cut(s) 920, 951
ZrmI AGTACT 1 cut(s) 549
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.