RLG00000002162

Belongs to the FPP GGPP synthase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
26553210 .. 26554801
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002162

Sequence Viewer

Length: 945 bp
ATGGAGCTTCGGATGACCACCCTGGCGTGGCGGCGGAGCATCAGAGGTTTTCTTTTCGTGGCAGCGGTGCTCGCAATCGGAGATGCAGTCGAGGTCAAGCATCTCGCCGCGGAGCTTGTCGGGTATGGCGTCGACGAGGATGAGCTTCGGAGGTTCTGGGTTAGGATGGTCTGGGCGATGGCCATGCCGACTTTGCCGGACTCTTCTTCTTCTTCTTCTCTGCATCTCGCCGCGGAGCTTGTTGGGTATGGCGTTGACGAGGACGAGCTTCGGAGGTCCTGGGTTAGGATGGTCTGGGCGATGGCTATGCCGACGTTGCCAGTGCCGATGATGGAGATCTTGGTCTGGCCGTTGGAGGAGGAGGGAGGGGCAGCCCCGTGGATGGGCTTGAAGAAGGCCTGGGTTAGGTCGAGGCCTCCGGAACCTGGGGAAGAAGCTGAAAACTCGACGCCGCCATCTCACCAGGGCCTTAGACGCTGCCATTTCGCTGAAAAACCCGATTACGATCCACGAAGCGCGTGCGAGATCGTCAGAGGGTCTGAGTCAGTTACCATGCCGGCGGCCTGCGCCGTCAAGATGATCCACACCATTTTGTTGATCCACGACGACTTGCCGTGTATGGATAATGACGATCTCCGCTGCTGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGACGTTGCAGTTTTAGCAGGCGAAGCGCTTCTCTCCTTCGCGGTCGAGCACCTAGCCTTGTCCACCGTATGCATCGAGCCTTCTAGAATCATCCGAGCCGTGGAAGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTAGCGGGTCAAGTCGTGGATATCCACTCTGAGGGGTTATCCGACGTGGGACTGGAGCACCTGGAGTACATACACCTCCACAAAATTGTAGCTCTTCTTGAATGTAAGAAGAAGATAAAAAGGAAAGCCTGA

Protein Analysis

315

Amino Acids

34.96

Weight (kDa)

5.5

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 183 - 300 2.1e-16 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 132
AccII CGCG 4 cut(s) 110, 233, 518, 716
AccIII TCCGGA 1 cut(s) 418
AclWI GGATC 3 cut(s) 500, 574, 592
AcoI YGGCCR 2 cut(s) 180, 347
AcyI GRCGYC 2 cut(s) 129, 449
AfaI GTAC 1 cut(s) 881
AfeI AGCGCT 1 cut(s) 702
AfiI CCNNNNNNNGG 8 cut(s) 27, 285, 382, 383, 405, 425, 775, 844
AgsI TTSAA 2 cut(s) 391, 914
AjiI CACGTC 1 cut(s) 859
AjnI CCWGG 6 cut(s) 21, 278, 398, 424, 462, 873
AluBI AGCT 8 cut(s) 7, 115, 145, 238, 268, 437, 784, 905
AluI AGCT 8 cut(s) 7, 115, 145, 238, 268, 437, 784, 905
Alw21I GWGCWC 3 cut(s) 72, 726, 873
AlwI GGATC 3 cut(s) 500, 574, 592
Aor13HI TCCGGA 1 cut(s) 418
Aor51HI AGCGCT 1 cut(s) 702
AoxI GGCC 6 cut(s) 180, 347, 396, 413, 466, 561
ApeKI GCWGC 4 cut(s) 62, 371, 477, 639
Asp700I GAANNNNTTC 1 cut(s) 702
AspLEI GCGC 3 cut(s) 518, 569, 703
AspS9I GGNCC 2 cut(s) 276, 466
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 1 cut(s) 452
AvaII GGWCC 1 cut(s) 276
BalI TGGCCA 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 3 cut(s) 72, 726, 873
BbvI GCAGC 4 cut(s) 74, 383, 464, 626
BccI CCATC 7 cut(s) 160, 172, 283, 295, 325, 376, 463
BceAI ACGGC 4 cut(s) 334, 554, 598, 758
BcgI CGANNNNNNTGC 8 cut(s) 166, 200, 289, 323, 501, 535, 662, 696
BciT130I CCWGG 6 cut(s) 23, 280, 400, 426, 464, 875
BcnI CCSGG 1 cut(s) 790
BfaI CTAG 2 cut(s) 728, 759
BfoI RGCGCY 1 cut(s) 704
BglII AGATCT 1 cut(s) 336
BisI GCNGC 9 cut(s) 32, 63, 108, 231, 372, 452, 478, 561, 640
BlsI GCNGC 9 cut(s) 33, 64, 109, 232, 373, 453, 479, 562, 641
Bme1390I CCNGG 7 cut(s) 23, 280, 400, 426, 464, 790, 875
Bme18I GGWCC 1 cut(s) 276
BmgBI CACGTC 1 cut(s) 859
BmgT120I GGNCC 2 cut(s) 276, 466
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 7 cut(s) 23, 280, 400, 426, 464, 790, 875
BmsI GCATC 5 cut(s) 48, 73, 109, 232, 756
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 2 cut(s) 887, 896
BpuMI CCSGG 1 cut(s) 790
BsaBI GATNNNNATC 2 cut(s) 335, 504
BsaHI GRCGYC 2 cut(s) 129, 449
BsaJI CCNNGG 9 cut(s) 21, 108, 231, 279, 377, 399, 425, 463, 774
BsaWI WCCGGW 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 8 cut(s) 27, 285, 382, 383, 405, 425, 775, 844
Bse118I RCCGGY 1 cut(s) 556
Bse1I ACTGG 2 cut(s) 320, 870
Bse8I GATNNNNATC 2 cut(s) 335, 504
BseAI TCCGGA 1 cut(s) 418
BseBI CCWGG 6 cut(s) 23, 280, 400, 426, 464, 875
BseDI CCNNGG 9 cut(s) 21, 108, 231, 279, 377, 399, 425, 463, 774
BseGI GGATG 6 cut(s) 18, 145, 171, 294, 387, 765
BseJI GATNNNNATC 2 cut(s) 335, 504
BseLI CCNNNNNNNGG 8 cut(s) 27, 285, 382, 383, 405, 425, 775, 844
BseMII CTCAG 2 cut(s) 531, 834
BseNI ACTGG 2 cut(s) 320, 870
BseRI GAGGAG 2 cut(s) 371, 374
BseXI GCAGC 4 cut(s) 74, 383, 464, 626
Bsh1236I CGCG 4 cut(s) 110, 233, 518, 716
Bsh1285I CGRYCG 1 cut(s) 720
BshFI GGCC 6 cut(s) 182, 349, 398, 415, 468, 563
BsiEI CGRYCG 1 cut(s) 720
BsiHKAI GWGCWC 3 cut(s) 72, 726, 873
BsiSI CCGG 4 cut(s) 197, 419, 557, 790
BslFI GGGAC 1 cut(s) 876
BslI CCNNNNNNNGG 8 cut(s) 27, 285, 382, 383, 405, 425, 775, 844
BsmFI GGGAC 1 cut(s) 876
BsnI GGCC 6 cut(s) 182, 349, 398, 415, 468, 563
Bsp1286I GDGCHC 3 cut(s) 72, 726, 873
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 6 cut(s) 336, 505, 525, 579, 597, 631
BspANI GGCC 6 cut(s) 182, 349, 398, 415, 468, 563
BspCNI CTCAG 2 cut(s) 532, 835
BspEI TCCGGA 1 cut(s) 418
BspFNI CGCG 4 cut(s) 110, 233, 518, 716
BspLI GGNNCC 1 cut(s) 423
BspPI GGATC 3 cut(s) 500, 574, 592
BspQI GCTCTTC 2 cut(s) 774, 912
BsrFI RCCGGY 1 cut(s) 556
BsrI ACTGG 2 cut(s) 320, 870
BssAI RCCGGY 1 cut(s) 556
BssECI CCNNGG 9 cut(s) 21, 108, 231, 279, 377, 399, 425, 463, 774
BssMI GATC 6 cut(s) 336, 505, 525, 579, 597, 631
BssNI GRCGYC 2 cut(s) 129, 449
Bst2UI CCWGG 6 cut(s) 23, 280, 400, 426, 464, 875
Bst4CI ACNGT 1 cut(s) 742
Bst6I CTCTTC 3 cut(s) 208, 774, 912
BstACI GRCGYC 2 cut(s) 129, 449
BstC8I GCNNGC 6 cut(s) 72, 520, 558, 565, 694, 786
BstDEI CTNAG 3 cut(s) 470, 540, 843
BstDSI CCRYGG 4 cut(s) 108, 231, 377, 774
BstENI CCTNNNNNAGG 2 cut(s) 283, 403
BstF5I GGATG 6 cut(s) 18, 145, 171, 294, 387, 765
BstFNI CGCG 4 cut(s) 110, 233, 518, 716
BstH2I RGCGCY 1 cut(s) 704
BstHHI GCGC 3 cut(s) 518, 569, 703
BstKTI GATC 6 cut(s) 339, 508, 528, 582, 600, 634
BstMBI GATC 6 cut(s) 336, 505, 525, 579, 597, 631
BstMCI CGRYCG 1 cut(s) 720
BstMWI GCNNNNNNNGC 7 cut(s) 71, 193, 316, 474, 566, 689, 698
BstNI CCWGG 6 cut(s) 23, 280, 400, 426, 464, 875
BstSCI CCNGG 7 cut(s) 21, 278, 398, 424, 462, 788, 873
BstUI CGCG 4 cut(s) 110, 233, 518, 716
BstV1I GCAGC 4 cut(s) 74, 383, 464, 626
BstV2I GAAGAC 1 cut(s) 681
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BsuRI GGCC 6 cut(s) 182, 349, 398, 415, 468, 563
BtgI CCRYGG 4 cut(s) 108, 231, 377, 774
BtgZI GCGATG 2 cut(s) 191, 314
BtrI CACGTC 1 cut(s) 859
BtsCI GGATG 6 cut(s) 18, 145, 171, 294, 387, 765
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 6 cut(s) 72, 520, 558, 565, 694, 786
CfoI GCGC 3 cut(s) 518, 569, 703
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 2 cut(s) 276, 466
Cfr42I CCGCGG 2 cut(s) 111, 234
CseI GACGC 3 cut(s) 118, 457, 483
Csp6I GTAC 1 cut(s) 880
CviAII CATG 2 cut(s) 184, 553
CviQI GTAC 1 cut(s) 880
DdeI CTNAG 3 cut(s) 470, 540, 843
DpnI GATC 6 cut(s) 338, 507, 527, 581, 599, 633
DpnII GATC 6 cut(s) 336, 505, 525, 579, 597, 631
EaeI YGGCCR 2 cut(s) 180, 347
Eam1104I CTCTTC 3 cut(s) 208, 774, 912
EarI CTCTTC 3 cut(s) 208, 774, 912
EciI GGCGGA 1 cut(s) 49
Eco147I AGGCCT 2 cut(s) 398, 415
Eco32I GATATC 1 cut(s) 835
Eco47I GGWCC 1 cut(s) 276
Eco47III AGCGCT 1 cut(s) 702
EcoNI CCTNNNNNAGG 2 cut(s) 283, 403
EcoO109I RGGNCCY 2 cut(s) 276, 466
EcoRII CCWGG 6 cut(s) 21, 278, 398, 424, 462, 873
EcoRV GATATC 1 cut(s) 835
EcoT22I ATGCAT 1 cut(s) 749
FaeI CATG 2 cut(s) 187, 556
FaiI YATR 8 cut(s) 126, 185, 249, 308, 554, 620, 745, 884
FaqI GGGAC 1 cut(s) 876
FatI CATG 2 cut(s) 183, 552
FauI CCCGC 1 cut(s) 811
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 9 cut(s) 32, 63, 108, 231, 372, 452, 478, 561, 640
FokI GGATG 6 cut(s) 25, 152, 178, 301, 394, 752
Fsp4HI GCNGC 9 cut(s) 32, 63, 108, 231, 372, 452, 478, 561, 640
FspBI CTAG 2 cut(s) 728, 759
GlaI GCGC 3 cut(s) 517, 568, 702
GluI GCNGC 9 cut(s) 32, 63, 108, 231, 372, 452, 478, 561, 640
GsuI CTGGAG 2 cut(s) 887, 896
HaeII RGCGCY 1 cut(s) 704
HaeIII GGCC 6 cut(s) 182, 349, 398, 415, 468, 563
HapII CCGG 4 cut(s) 197, 419, 557, 790
HgaI GACGC 3 cut(s) 118, 457, 483
HhaI GCGC 3 cut(s) 518, 569, 703
Hin1I GRCGYC 2 cut(s) 129, 449
Hin1II CATG 2 cut(s) 187, 556
Hin6I GCGC 3 cut(s) 516, 567, 701
HinP1I GCGC 3 cut(s) 516, 567, 701
HincII GTYRAC 2 cut(s) 133, 256
HindII GTYRAC 2 cut(s) 133, 256
HinfI GANTC 3 cut(s) 200, 542, 762
HpaII CCGG 4 cut(s) 197, 419, 557, 790
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 3 cut(s) 133, 256, 738
Hpy188III TCNNGA 4 cut(s) 419, 574, 759, 911
Hpy8I GTNNAC 3 cut(s) 133, 256, 738
Hpy99I CGWCG 6 cut(s) 134, 137, 316, 451, 608, 860
HpyAV CCTTC 3 cut(s) 388, 721, 765
HpyCH4III ACNGT 1 cut(s) 742
HpyCH4IV ACGT 3 cut(s) 314, 678, 858
HpyCH4V TGCA 4 cut(s) 86, 223, 683, 747
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 193, 316, 474, 566, 689, 698
HpyF3I CTNAG 3 cut(s) 470, 540, 843
HpySE526I ACGT 3 cut(s) 314, 678, 858
Hsp92I GRCGYC 2 cut(s) 129, 449
Hsp92II CATG 2 cut(s) 187, 556
HspAI GCGC 3 cut(s) 516, 567, 701
Kpn2I TCCGGA 1 cut(s) 418
KroI GCCGGC 1 cut(s) 556
KroNI GCCGGC 1 cut(s) 558
KspI CCGCGG 2 cut(s) 111, 234
Kzo9I GATC 6 cut(s) 336, 505, 525, 579, 597, 631
LguI GCTCTTC 2 cut(s) 774, 912
LmnI GCTCC 5 cut(s) 4, 36, 112, 235, 868
Lsp1109I GCAGC 4 cut(s) 74, 383, 464, 626
LweI GCATC 5 cut(s) 48, 73, 109, 232, 756
MaeI CTAG 2 cut(s) 728, 759
MaeII ACGT 3 cut(s) 314, 678, 858
MaeIII GTNAC 1 cut(s) 547
MalI GATC 6 cut(s) 338, 507, 527, 581, 599, 633
MboI GATC 6 cut(s) 336, 505, 525, 579, 597, 631
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 3 cut(s) 72, 726, 873
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 1 cut(s) 897
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 2 cut(s) 194, 551
MmeI TCCRAC 3 cut(s) 333, 783, 879
Mox20I TGGCCA 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 749
MroI TCCGGA 1 cut(s) 418
MroNI GCCGGC 1 cut(s) 556
MroXI GAANNNNTTC 1 cut(s) 702
MscI TGGCCA 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 4 cut(s) 65, 110, 233, 639
MspI CCGG 4 cut(s) 197, 419, 557, 790
MspR9I CCNGG 7 cut(s) 23, 280, 400, 426, 464, 790, 875
MvaI CCWGG 6 cut(s) 23, 280, 400, 426, 464, 875
MvnI CGCG 4 cut(s) 110, 233, 518, 716
MwoI GCNNNNNNNGC 7 cut(s) 71, 193, 316, 474, 566, 689, 698
NaeI GCCGGC 1 cut(s) 558
NciI CCSGG 1 cut(s) 790
NdeII GATC 6 cut(s) 336, 505, 525, 579, 597, 631
NgoMIV GCCGGC 1 cut(s) 556
NlaIII CATG 2 cut(s) 187, 556
NlaIV GGNNCC 1 cut(s) 423
NsiI ATGCAT 1 cut(s) 749
PceI AGGCCT 2 cut(s) 398, 415
PciSI GCTCTTC 2 cut(s) 774, 912
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 675
PdiI GCCGGC 1 cut(s) 558
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 1 cut(s) 762
PkrI GCNGC 9 cut(s) 33, 64, 109, 232, 373, 453, 479, 562, 641
PleI GAGTC 2 cut(s) 194, 550
PpsI GAGTC 2 cut(s) 194, 550
PpuMI RGGWCCY 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 276
Psp6I CCWGG 6 cut(s) 21, 278, 398, 424, 462, 873
PspGI CCWGG 6 cut(s) 21, 278, 398, 424, 462, 873
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 2 cut(s) 276, 466
PspPPI RGGWCCY 1 cut(s) 276
PsuI RGATCY 1 cut(s) 336
RsaI GTAC 1 cut(s) 881
RsaNI GTAC 1 cut(s) 880
SacII CCGCGG 2 cut(s) 111, 234
SalI GTCGAC 1 cut(s) 131
SapI GCTCTTC 2 cut(s) 774, 912
SatI GCNGC 9 cut(s) 32, 63, 108, 231, 372, 452, 478, 561, 640
Sau3AI GATC 6 cut(s) 336, 505, 525, 579, 597, 631
Sau96I GGNCC 2 cut(s) 276, 466
SchI GAGTC 2 cut(s) 194, 551
ScrFI CCNGG 7 cut(s) 23, 280, 400, 426, 464, 790, 875
SduI GDGCHC 3 cut(s) 72, 726, 873
SfaNI GCATC 5 cut(s) 48, 73, 109, 232, 756
Sfr303I CCGCGG 2 cut(s) 111, 234
SgrBI CCGCGG 2 cut(s) 111, 234
SgrDI CGTCGACG 1 cut(s) 131
SinI GGWCC 1 cut(s) 276
Sse9I AATT 1 cut(s) 897
SseBI AGGCCT 2 cut(s) 398, 415
SspMI CTAG 2 cut(s) 728, 759
StuI AGGCCT 2 cut(s) 398, 415
StyD4I CCNGG 7 cut(s) 21, 278, 398, 424, 462, 788, 873
TaaI ACNGT 1 cut(s) 742
TaiI ACGT 3 cut(s) 317, 681, 861
TaqI TCGA 6 cut(s) 90, 132, 410, 446, 720, 750
TasI AATT 1 cut(s) 897
TatI WGTACW 1 cut(s) 879
TauI GCSGC 5 cut(s) 34, 110, 233, 454, 563
TfiI GAWTC 1 cut(s) 762
TscAI CASTG 1 cut(s) 327
TseI GCWGC 4 cut(s) 62, 371, 477, 639
TspRI CASTG 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 276
XagI CCTNNNNNAGG 2 cut(s) 283, 403
XbaI TCTAGA 1 cut(s) 758
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 2 cut(s) 728, 759
Zsp2I ATGCAT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.