Rorug04G0140900

Belongs to the FPP GGPP synthase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
23299213 .. 23301310
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0140900.1

Sequence Viewer

Length: 258 bp
ATGATAGCTCTGCAGCAGCTTCTTTTTCCATGTGAAAGACAAATACAGCTTCTGTCCTTGAGGCAATGGATTACAAACGCTTCTTCCATGAACATGCTAAGGAATTGGGGTAATAGAGCTAGAGAAGCAGAGGTCTTTCCCTTGTTCCCGGCTCCTGTACTTTTGGAGTTGCTCAAATTAATGGTGCAGACATCTCGACTCCTATTTGGAGTACTTGCCCCCAAGTTTGGAAATGGAATCTCGCAATTCTATCTGTAA

Protein Analysis

85

Amino Acids

9.79

Weight (kDa)

10.26

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 159, 213
AfiI CCNNNNNNNGG 1 cut(s) 227
AluBI AGCT 4 cut(s) 8, 19, 49, 119
AluI AGCT 4 cut(s) 8, 19, 49, 119
AlwNI CAGNNNCTG 1 cut(s) 52
ApeKI GCWGC 2 cut(s) 13, 16
AseI ATTAAT 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 149
BbvI GCAGC 2 cut(s) 25, 28
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BcnI CCSGG 1 cut(s) 149
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 11
BisI GCNGC 2 cut(s) 14, 17
BlsI GCNGC 2 cut(s) 15, 18
BmcAI AGTACT 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 25, 28
BsgI GTGCAG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 25, 28
CaiI CAGNNNCTG 1 cut(s) 52
Csp6I GTAC 2 cut(s) 158, 212
CviAII CATG 3 cut(s) 30, 88, 94
CviJI RGCY 5 cut(s) 8, 19, 49, 119, 152
CviKI_1 RGCY 5 cut(s) 8, 19, 49, 119, 152
CviQI GTAC 2 cut(s) 158, 212
DdeI CTNAG 1 cut(s) 98
FaeI CATG 3 cut(s) 33, 91, 97
FaiI YATR 3 cut(s) 31, 89, 95
FatI CATG 3 cut(s) 29, 87, 93
Fnu4HI GCNGC 2 cut(s) 14, 17
Fsp4HI GCNGC 2 cut(s) 14, 17
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 14, 17
HapII CCGG 1 cut(s) 149
Hin1II CATG 3 cut(s) 33, 91, 97
HinfI GANTC 2 cut(s) 198, 237
HpaII CCGG 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 13, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 3 cut(s) 33, 91, 97
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 2 cut(s) 162, 168
Lsp1109I GCAGC 2 cut(s) 25, 28
MaeI CTAG 1 cut(s) 120
MboII GAAGA 1 cut(s) 75
MluCI AATT 3 cut(s) 103, 176, 245
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 2 cut(s) 54, 124
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 125
NciI CCSGG 1 cut(s) 149
NlaIII CATG 3 cut(s) 33, 91, 97
NlaIV GGNNCC 1 cut(s) 153
NspI RCATGY 1 cut(s) 97
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 2 cut(s) 15, 18
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PshBI ATTAAT 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 153
PstI CTGCAG 1 cut(s) 15
PstNI CAGNNNCTG 1 cut(s) 52
RsaI GTAC 2 cut(s) 159, 213
RsaNI GTAC 2 cut(s) 158, 212
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 2 cut(s) 14, 17
ScaI AGTACT 1 cut(s) 213
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 149
SetI ASST 5 cut(s) 10, 21, 51, 121, 135
SfcI CTRYAG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 3 cut(s) 103, 176, 245
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 147
TaqI TCGA 1 cut(s) 196
TasI AATT 3 cut(s) 103, 176, 245
TatI WGTACW 2 cut(s) 157, 211
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseI GCWGC 2 cut(s) 13, 16
TspDTI ATGAA 1 cut(s) 104
VspI ATTAAT 1 cut(s) 179
XceI RCATGY 1 cut(s) 97
XspI CTAG 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.