Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014557.1

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 867

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014557.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 467 bp

atcagaactcgacgccgccatctcaccagggccttagacgctgccatttcgctaaaagacccgattacgatccacgaagcgcgtgcgagatcgtcagagggtctgagtcagttaccatgccggcggtctgcaccgtcaagatgatccacaccatgttgttgatccacgacgacttgccgtgcatggataatgacgatctccgccgccggaagcccaccaaccacaaggttttcggcgaagacgttgcagttttggctggcgaagtgcttctctccttcgcggtcgagcacctagccttgtccaccgtcggcatcgagccttctagaatcatccgagcagtggaagagcttgcccggtcaatcgggtcggagggattggtagcgggtcagtcgtggatatccactctgaggggttatccgacgtgggactggagcacctggagtacatacacctccacaaaattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

154

Amino Acids

17.19

Weight (kDa)

6.65

Isoelectric Point (pI)

63.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	82, 280
AciI	CCGC	6 cut(s)	16, 124, 201, 204, 280, 382
AclWI	GGATC	3 cut(s)	64, 138, 156
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	2 cut(s)	339, 407
AjiI	CACGTC	1 cut(s)	422
AjnI	CCWGG	2 cut(s)	26, 436
AluBI	AGCT	1 cut(s)	348
AluI	AGCT	1 cut(s)	348
Alw21I	GWGCWC	2 cut(s)	290, 436
AlwI	GGATC	3 cut(s)	64, 138, 156
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	290, 436
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	27
BceAI	ACGGC	1 cut(s)	162
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 226, 260
BciT130I	CCWGG	2 cut(s)	28, 438
BcnI	CCSGG	1 cut(s)	354
BfaI	CTAG	2 cut(s)	292, 323
BisI	GCNGC	3 cut(s)	16, 42, 204
BlsI	GCNGC	3 cut(s)	17, 43, 205
Bme1390I	CCNGG	3 cut(s)	28, 354, 438
BmgBI	CACGTC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	30
BmrFI	CCNGG	3 cut(s)	28, 354, 438
BmsI	GCATC	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	2 cut(s)	450, 459
BpuMI	CCSGG	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 407
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	28, 438
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	329
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	339, 407
BseMII	CTCAG	2 cut(s)	95, 397
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	114
Bsh1236I	CGCG	2 cut(s)	82, 280
Bsh1285I	CGRYCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	284
BsiHKAI	GWGCWC	2 cut(s)	290, 436
BsiSI	CCGG	3 cut(s)	121, 207, 354
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	2 cut(s)	339, 407
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	290, 436
Bsp143I	GATC	5 cut(s)	69, 89, 143, 161, 195
BspACI	CCGC	6 cut(s)	16, 124, 201, 204, 280, 382
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	96, 398
BspFNI	CGCG	2 cut(s)	82, 280
BspPI	GGATC	3 cut(s)	64, 138, 156
BspQI	GCTCTTC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	5 cut(s)	69, 89, 143, 161, 195
BssNI	GRCGYC	1 cut(s)	13
Bst2UI	CCWGG	2 cut(s)	28, 438
Bst4CI	ACNGT	2 cut(s)	135, 306
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	13
BstC8I	GCNNGC	4 cut(s)	84, 122, 258, 350
BstDEI	CTNAG	3 cut(s)	34, 104, 406
BstF5I	GGATG	1 cut(s)	329
BstFNI	CGCG	2 cut(s)	82, 280
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	5 cut(s)	72, 92, 146, 164, 198
BstMBI	GATC	5 cut(s)	69, 89, 143, 161, 195
BstMCI	CGRYCG	1 cut(s)	284
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 253
BstNI	CCWGG	2 cut(s)	28, 438
BstSCI	CCNGG	3 cut(s)	26, 352, 436
BstUI	CGCG	2 cut(s)	82, 280
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	329
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	4 cut(s)	84, 122, 258, 350
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	2 cut(s)	21, 47
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	3 cut(s)	117, 153, 183
CviJI	RGCY	6 cut(s)	32, 213, 256, 295, 318, 348
CviKI_1	RGCY	6 cut(s)	32, 213, 256, 295, 318, 348
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	3 cut(s)	34, 104, 406
DpnI	GATC	5 cut(s)	71, 91, 145, 163, 197
DpnII	GATC	5 cut(s)	69, 89, 143, 161, 195
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	26, 436
EcoRV	GATATC	1 cut(s)	398
FaeI	CATG	3 cut(s)	120, 156, 186
FaiI	YATR	4 cut(s)	118, 154, 184, 447
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	3 cut(s)	116, 152, 182
FauI	CCCGC	1 cut(s)	375
Fnu4HI	GCNGC	3 cut(s)	16, 42, 204
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	3 cut(s)	16, 42, 204
FspBI	CTAG	2 cut(s)	292, 323
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	3 cut(s)	16, 42, 204
GsuI	CTGGAG	2 cut(s)	450, 459
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	3 cut(s)	121, 207, 354
HgaI	GACGC	2 cut(s)	21, 47
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	120, 156, 186
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	2 cut(s)	106, 326
HpaII	CCGG	3 cut(s)	121, 207, 354
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	7 cut(s)	5, 97, 105, 334, 369, 407, 419
Hpy188III	TCNNGA	2 cut(s)	138, 323
Hpy8I	GTNNAC	1 cut(s)	302
Hpy99I	CGWCG	4 cut(s)	15, 172, 310, 423
HpyAV	CCTTC	2 cut(s)	285, 329
HpyCH4III	ACNGT	2 cut(s)	135, 306
HpyCH4IV	ACGT	2 cut(s)	242, 421
HpyCH4V	TGCA	3 cut(s)	131, 182, 247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 253
HpyF3I	CTNAG	3 cut(s)	34, 104, 406
HpySE526I	ACGT	2 cut(s)	242, 421
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	3 cut(s)	120, 156, 186
HspAI	GCGC	1 cut(s)	80
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
Kzo9I	GATC	5 cut(s)	69, 89, 143, 161, 195
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	1 cut(s)	431
LpnPI	CCDG	9 cut(s)	13, 40, 134, 220, 242, 367, 414, 423, 450
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	2 cut(s)	292, 323
MaeII	ACGT	2 cut(s)	242, 421
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	5 cut(s)	71, 91, 145, 163, 197
MboI	GATC	5 cut(s)	69, 89, 143, 161, 195
MboII	GAAGA	2 cut(s)	250, 355
MhlI	GDGCHC	2 cut(s)	290, 436
MluCI	AATT	1 cut(s)	460
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	2 cut(s)	347, 442
MnlI	CCTC	4 cut(s)	91, 363, 401, 462
MroNI	GCCGGC	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	266
MspI	CCGG	3 cut(s)	121, 207, 354
MspR9I	CCNGG	3 cut(s)	28, 354, 438
MvaI	CCWGG	2 cut(s)	28, 438
MvnI	CGCG	2 cut(s)	82, 280
MwoI	GCNNNNNNNGC	2 cut(s)	38, 253
NaeI	GCCGGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	5 cut(s)	69, 89, 143, 161, 195
NgoMIV	GCCGGC	1 cut(s)	120
NlaIII	CATG	3 cut(s)	120, 156, 186
PciSI	GCTCTTC	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	239
PdiI	GCCGGC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	17, 43, 205
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	26, 436
PspGI	CCWGG	2 cut(s)	26, 436
PspPI	GGNCC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
SapI	GCTCTTC	1 cut(s)	338
SatI	GCNGC	3 cut(s)	16, 42, 204
Sau3AI	GATC	5 cut(s)	69, 89, 143, 161, 195
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	3 cut(s)	28, 354, 438
SduI	GDGCHC	2 cut(s)	290, 436
SetI	ASST	7 cut(s)	230, 245, 293, 350, 424, 439, 454
SfaNI	GCATC	1 cut(s)	320
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	6 cut(s)	16, 124, 201, 204, 280, 382
SspMI	CTAG	2 cut(s)	292, 323
StyD4I	CCNGG	3 cut(s)	26, 352, 436
TaaI	ACNGT	2 cut(s)	135, 306
TaiI	ACGT	2 cut(s)	245, 424
TaqI	TCGA	3 cut(s)	10, 284, 314
TasI	AATT	1 cut(s)	460
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	2 cut(s)	18, 206
TfiI	GAWTC	1 cut(s)	326
TscAI	CASTG	1 cut(s)	344
TseI	GCWGC	1 cut(s)	41
TspRI	CASTG	1 cut(s)	344
XbaI	TCTAGA	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	2 cut(s)	292, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.