Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Reverse (-)

7892564 .. 7892890

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG099400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGATAATGAAGATCTCCGCCGCGGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGACGTTGCAGTTTTGGCGGGCGAAGCGCTTCTCTCCTTCGCAGTCGAGCACCTAGCCTTGTCCACCGTCGACATCGAGCCTTCTAGAATCGTCCGAGCCGTGGAAGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTAGCGGGTCAAGTCGTGGATATCCACTCTGAGGGGTTATCCGACGTGGGACTGGAGCACCTGGAGTACATACACCTCCACAAAATTGTAGCTCTTCTTGAATGTAAGAAGAAGATAAAAAGGAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

108

Amino Acids

11.83

Weight (kDa)

5.84

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	1 - 97	1.3e-12	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	24
AciI	CCGC	5 cut(s)	19, 22, 24, 74, 200
AfaI	GTAC	1 cut(s)	263
AfeI	AGCGCT	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	157, 226
AgsI	TTSAA	1 cut(s)	296
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	2 cut(s)	166, 287
AluI	AGCT	2 cut(s)	166, 287
Alw21I	GWGCWC	2 cut(s)	108, 255
Aor51HI	AGCGCT	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	108, 255
BceAI	ACGGC	1 cut(s)	140
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	172
BfaI	CTAG	2 cut(s)	110, 141
BfoI	RGCGCY	1 cut(s)	86
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	172, 257
BmgBI	CACGTC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	172, 257
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	2 cut(s)	269, 278
BpuMI	CCSGG	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	22, 156
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 226
Bse1I	ACTGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	22, 156
BseLI	CCNNNNNNNGG	2 cut(s)	157, 226
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	24
BsiHKAI	GWGCWC	2 cut(s)	108, 255
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	157, 226
BsmFI	GGGAC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	108, 255
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	5 cut(s)	19, 22, 24, 74, 200
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	24
BspQI	GCTCTTC	2 cut(s)	156, 294
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	22, 156
BssMI	GATC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	156, 294
BstC8I	GCNNGC	2 cut(s)	76, 168
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	2 cut(s)	22, 156
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 80
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	170, 255
BstUI	CGCG	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtgI	CCRYGG	2 cut(s)	22, 156
BtrI	CACGTC	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	76, 168
CfoI	GCGC	1 cut(s)	85
Cfr42I	CCGCGG	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	262
CviJI	RGCY	7 cut(s)	31, 113, 136, 155, 166, 287, 323
CviKI_1	RGCY	7 cut(s)	31, 113, 136, 155, 166, 287, 323
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eam1104I	CTCTTC	2 cut(s)	156, 294
EarI	CTCTTC	2 cut(s)	156, 294
EciI	GGCGGA	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	217
Eco47III	AGCGCT	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	255
EcoRV	GATATC	1 cut(s)	217
FaiI	YATR	1 cut(s)	266
FaqI	GGGAC	1 cut(s)	258
FauI	CCCGC	3 cut(s)	17, 67, 193
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	2 cut(s)	110, 141
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	22
GsuI	CTGGAG	2 cut(s)	269, 278
HaeII	RGCGCY	1 cut(s)	86
HapII	CCGG	1 cut(s)	172
HhaI	GCGC	1 cut(s)	85
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	144
HpaII	CCGG	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	120, 127
Hpy188I	TCNGA	4 cut(s)	152, 187, 226, 238
Hpy188III	TCNNGA	2 cut(s)	141, 293
Hpy8I	GTNNAC	2 cut(s)	120, 127
Hpy99I	CGWCG	2 cut(s)	128, 242
HpyAV	CCTTC	2 cut(s)	103, 147
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	2 cut(s)	60, 240
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 80
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	2 cut(s)	60, 240
HspAI	GCGC	1 cut(s)	83
KspI	CCGCGG	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	13
LguI	GCTCTTC	2 cut(s)	156, 294
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	4 cut(s)	185, 233, 242, 269
MaeI	CTAG	2 cut(s)	110, 141
MaeII	ACGT	2 cut(s)	60, 240
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	6 cut(s)	23, 68, 173, 281, 316, 319
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	2 cut(s)	108, 255
MluCI	AATT	1 cut(s)	279
MmeI	TCCRAC	2 cut(s)	165, 261
MnlI	CCTC	3 cut(s)	181, 220, 281
MroXI	GAANNNNTTC	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	2 cut(s)	172, 257
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	71, 80
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	1 cut(s)	13
PciSI	GCTCTTC	2 cut(s)	156, 294
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 153
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacII	CCGCGG	1 cut(s)	25
SalI	GTCGAC	1 cut(s)	125
SapI	GCTCTTC	2 cut(s)	156, 294
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	172, 257
SduI	GDGCHC	2 cut(s)	108, 255
SetI	ASST	8 cut(s)	48, 63, 111, 168, 243, 258, 273, 289
Sfr303I	CCGCGG	1 cut(s)	25
SgrBI	CCGCGG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	5 cut(s)	19, 22, 24, 74, 200
SspMI	CTAG	2 cut(s)	110, 141
StyD4I	CCNGG	2 cut(s)	170, 255
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	2 cut(s)	63, 243
TaqI	TCGA	3 cut(s)	102, 126, 132
TasI	AATT	1 cut(s)	279
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	144
TspDTI	ATGAA	1 cut(s)	24
XbaI	TCTAGA	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	2 cut(s)	110, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.