Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00621

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

49148 .. 49738

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCCAGAAATCAAACTCCAGATCAGAACTCGACGCAGCCATCTCACCAGGGCCTTAGACGCTGCCATTTCGCTGAAAGACCCGATTACGATCCACGAAGCGATCGATGCGGTAATCTTTCCTCGCCGGAGGCAAGAGGGTCCACCTGTTCTGTGTGTCGCAGCGTGCAAGATCGTCAGAGGGTCTGAGTCAGTCACCATGCCGGCGGCCTGTGTCGTCAAGATGATCCACACCATGTTGTTGATCCACGACGACTTGCCGTGCATGGATAATGAAGATCTCCGCCGCGGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGACGTTGCAGTTTTGGCGGGCGAAGCGCTTCTCTCCTTCGCAGTCGAGCACCTAGCCTTGTCCACCGTCGACATCGAGCCTTCTAGAATCGTCCGAGCCGTGGAAGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTAGCGGGTCAAGTCGTGGATATCCACTCTGAGGGGTTATCCGACGTGGGACTGGAGCACCTGGAGTACATACACCTCCACAAAATTGTAGCTCTTCTTGAATGTAAGAAGAAGATAAAAAGGAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

196

Amino Acids

21.59

Weight (kDa)

6.79

Isoelectric Point (pI)

58.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	49 - 182	2.8e-22	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	1 cut(s)	288
AciI	CCGC	7 cut(s)	110, 206, 283, 286, 288, 338, 464
AclWI	GGATC	3 cut(s)	85, 220, 238
AfaI	GTAC	1 cut(s)	527
AfeI	AGCGCT	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	421, 490
AgsI	TTSAA	1 cut(s)	560
AjiI	CACGTC	1 cut(s)	505
AjnI	CCWGG	2 cut(s)	47, 519
AluBI	AGCT	2 cut(s)	430, 551
AluI	AGCT	2 cut(s)	430, 551
Alw21I	GWGCWC	2 cut(s)	372, 519
AlwI	GGATC	3 cut(s)	85, 220, 238
Aor51HI	AGCGCT	1 cut(s)	348
AoxI	GGCC	2 cut(s)	51, 207
ApeKI	GCWGC	3 cut(s)	36, 62, 161
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	51, 140
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	2 cut(s)	37, 187
AvaII	GGWCC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	2 cut(s)	372, 519
BbvI	GCAGC	3 cut(s)	48, 49, 173
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	2 cut(s)	244, 404
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	2 cut(s)	49, 521
BcnI	CCSGG	1 cut(s)	436
BfaI	CTAG	2 cut(s)	374, 405
BfoI	RGCGCY	1 cut(s)	350
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	5 cut(s)	37, 63, 162, 207, 286
BlsI	GCNGC	5 cut(s)	38, 64, 163, 208, 287
Bme1390I	CCNGG	3 cut(s)	49, 436, 521
Bme18I	GGWCC	1 cut(s)	140
BmgBI	CACGTC	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	51, 140
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	3 cut(s)	49, 436, 521
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	327
BpmI	CTGGAG	2 cut(s)	533, 542
BpuMI	CCSGG	1 cut(s)	436
Bsa29I	ATCGAT	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	48, 286, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 490
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	2 cut(s)	49, 521
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	48, 286, 420
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	421, 490
BseMII	CTCAG	2 cut(s)	177, 480
BseNI	ACTGG	1 cut(s)	516
BseXI	GCAGC	3 cut(s)	48, 49, 173
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	53, 209
BshVI	ATCGAT	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	372, 519
BsiSI	CCGG	3 cut(s)	127, 203, 436
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	2 cut(s)	421, 490
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	2 cut(s)	53, 209
Bsp1286I	GDGCHC	2 cut(s)	372, 519
Bsp143I	GATC	7 cut(s)	21, 90, 102, 171, 225, 243, 277
BspACI	CCGC	7 cut(s)	110, 206, 283, 286, 288, 338, 464
BspANI	GGCC	2 cut(s)	53, 209
BspCNI	CTCAG	2 cut(s)	178, 481
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	3 cut(s)	85, 220, 238
BspQI	GCTCTTC	2 cut(s)	420, 558
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	3 cut(s)	48, 286, 420
BssMI	GATC	7 cut(s)	21, 90, 102, 171, 225, 243, 277
Bst2UI	CCWGG	2 cut(s)	49, 521
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	2 cut(s)	420, 558
BstC8I	GCNNGC	4 cut(s)	166, 204, 340, 432
BstDEI	CTNAG	3 cut(s)	55, 186, 489
BstDSI	CCRYGG	2 cut(s)	286, 420
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	7 cut(s)	24, 93, 105, 174, 228, 246, 280
BstMBI	GATC	7 cut(s)	21, 90, 102, 171, 225, 243, 277
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 107, 335, 344
BstNI	CCWGG	2 cut(s)	49, 521
BstSCI	CCNGG	3 cut(s)	47, 434, 519
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	48, 49, 173
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	53, 209
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	2 cut(s)	286, 420
BtrI	CACGTC	1 cut(s)	505
Cac8I	GCNNGC	4 cut(s)	166, 204, 340, 432
CfoI	GCGC	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	51, 140
Cfr42I	CCGCGG	1 cut(s)	289
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	2 cut(s)	42, 68
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	3 cut(s)	199, 235, 265
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	3 cut(s)	55, 186, 489
DpnI	GATC	7 cut(s)	23, 92, 104, 173, 227, 245, 279
DpnII	GATC	7 cut(s)	21, 90, 102, 171, 225, 243, 277
Eam1104I	CTCTTC	2 cut(s)	420, 558
EarI	CTCTTC	2 cut(s)	420, 558
EciI	GGCGGA	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	140
Eco47III	AGCGCT	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	47, 519
EcoRV	GATATC	1 cut(s)	481
FaeI	CATG	3 cut(s)	202, 238, 268
FaiI	YATR	4 cut(s)	200, 236, 266, 530
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	3 cut(s)	198, 234, 264
FauI	CCCGC	3 cut(s)	281, 331, 457
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	5 cut(s)	37, 63, 162, 207, 286
Fsp4HI	GCNGC	5 cut(s)	37, 63, 162, 207, 286
FspBI	CTAG	2 cut(s)	374, 405
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	5 cut(s)	37, 63, 162, 207, 286
GsuI	CTGGAG	2 cut(s)	533, 542
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	2 cut(s)	53, 209
HapII	CCGG	3 cut(s)	127, 203, 436
HgaI	GACGC	2 cut(s)	42, 68
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	202, 238, 268
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	188, 408
HpaII	CCGG	3 cut(s)	127, 203, 436
HphI	GGTGA	2 cut(s)	37, 187
Hpy166II	GTNNAC	3 cut(s)	143, 384, 391
Hpy188I	TCNGA	7 cut(s)	26, 179, 187, 416, 451, 490, 502
Hpy188III	TCNNGA	4 cut(s)	19, 220, 405, 557
Hpy8I	GTNNAC	3 cut(s)	143, 384, 391
Hpy99I	CGWCG	4 cut(s)	36, 254, 392, 506
HpyAV	CCTTC	2 cut(s)	367, 411
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	324, 504
HpyCH4V	TGCA	3 cut(s)	168, 264, 329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 107, 335, 344
HpyF3I	CTNAG	3 cut(s)	55, 186, 489
HpySE526I	ACGT	2 cut(s)	324, 504
Hsp92II	CATG	3 cut(s)	202, 238, 268
HspAI	GCGC	1 cut(s)	347
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	7 cut(s)	21, 90, 102, 171, 225, 243, 277
LguI	GCTCTTC	2 cut(s)	420, 558
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	3 cut(s)	48, 49, 173
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	374, 405
MaeII	ACGT	2 cut(s)	324, 504
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	7 cut(s)	23, 92, 104, 173, 227, 245, 279
MboI	GATC	7 cut(s)	21, 90, 102, 171, 225, 243, 277
MboII	GAAGA	6 cut(s)	287, 332, 437, 545, 580, 583
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	372, 519
MluCI	AATT	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	429, 525
MnlI	CCTC	7 cut(s)	123, 130, 132, 173, 445, 484, 545
MroNI	GCCGGC	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	3 cut(s)	127, 203, 436
MspR9I	CCNGG	3 cut(s)	49, 436, 521
MvaI	CCWGG	2 cut(s)	49, 521
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	4 cut(s)	59, 107, 335, 344
NaeI	GCCGGC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	7 cut(s)	21, 90, 102, 171, 225, 243, 277
NgoMIV	GCCGGC	1 cut(s)	202
NlaIII	CATG	3 cut(s)	202, 238, 268
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	193
PciSI	GCTCTTC	2 cut(s)	420, 558
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 321, 417
PdiI	GCCGGC	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	408
PkrI	GCNGC	5 cut(s)	38, 64, 163, 208, 287
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	47, 519
PspGI	CCWGG	2 cut(s)	47, 519
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	51, 140
PsuI	RGATCY	1 cut(s)	277
PvuI	CGATCG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SacII	CCGCGG	1 cut(s)	289
SalI	GTCGAC	1 cut(s)	389
SapI	GCTCTTC	2 cut(s)	420, 558
SatI	GCNGC	5 cut(s)	37, 63, 162, 207, 286
Sau3AI	GATC	7 cut(s)	21, 90, 102, 171, 225, 243, 277
Sau96I	GGNCC	2 cut(s)	51, 140
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	3 cut(s)	49, 436, 521
SduI	GDGCHC	2 cut(s)	372, 519
SetI	ASST	9 cut(s)	148, 312, 327, 375, 432, 507, 522, 537, 553
SfaNI	GCATC	1 cut(s)	97
Sfr303I	CCGCGG	1 cut(s)	289
SgrBI	CCGCGG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	140
Sse9I	AATT	1 cut(s)	543
SsiI	CCGC	7 cut(s)	110, 206, 283, 286, 288, 338, 464
SspMI	CTAG	2 cut(s)	374, 405
StyD4I	CCNGG	3 cut(s)	47, 434, 519
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	2 cut(s)	327, 507
TaqI	TCGA	5 cut(s)	31, 105, 366, 390, 396
TasI	AATT	1 cut(s)	543
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	2 cut(s)	209, 288
TfiI	GAWTC	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	3 cut(s)	36, 62, 161
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	140
XbaI	TCTAGA	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	374, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.