Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000884

Physical Location & Seq

Genomic Coordinates Forward (+)

75184996 .. 75186256

Gene Structure 1261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTGGAGAAGGCCGAGTCCGTCAACCGGGCCTTAGACACCGCCGTTTCGCTGAAAGACCTGATTACGATCCATGAAGCGATGCGGTACTCTTTGCTCGCCGGAGGCAAGAGGGTCCGACCTGTTCTGTGTGTCCCGGCGTGCGAGCTTGACAGGACCCGCCCCGGATTTCACCCCGAAATCCGGAGTGGCCCTGCGGGGCCCACCTTAGTGATAACTCTACCGAGAACTGAGCTCGTCAGAGGGTCTGAGTCCGTCGCCATGCTGGCGGCCTGCGCCGTCGAGATGATCCACACCATGTCGTTGATCCACGACGACTTGCCGTGCATGGATAACGTCGACCTCCGCTGCGGGAAGCCCACCAACCACAAGGTTTTTGGCGAAGACGTTGCCGTTTTGGCCGGCGACGCGCTTCTCTCCTTCGCATTCGAGCACCTAGCCTTGTCCACCATCGGCGTCGAGCCTTCTAGAATCGTCCGAGCCGTGGAAGAGCTTGCCCGATCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

169

Amino Acids

18.28

Weight (kDa)

5.85

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	24 - 159	1.3e-21	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000884)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22980 FvH4_4g14810
rosa_chinensis	RchiOBHm_Chr1g0353891 RchiOBHm_Chr1g0382941 RchiOBHm_Chr2g0173741 RchiOBHm_Chr3g0466051 RchiOBHm_Chr5g0013331 RchiOBHm_Chr5g0023661 RchiOBHm_Chr5g0045111 RchiOBHm_Chr5g0045401 RchiOBHm_Chr5g0069311 RchiOBHm_Chr7g0227191
rosa_laevigata	RLG00000001318 RLG00000002162 RLG00000012972 RLG00000019463 RLG00000022876 RLG00000028675
rosa_multiflora	Rmu_sc0002340.1_g000005 Rmu_sc0002658.1_g000001 Rmu_sc0005135.1_g000001 Rmu_sc0006781.1_g000003 Rmu_sc0014557.1_g000001 Rmu_sc0015866.1_g000006 Rmu_sc0039635.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245640 Rroxscaffold_5G00364010
rosa_rugosa	Rorug01G0361600.1 Rorug04G0140900
rosa_samantha	Rh2AG293100 Rh2AG315300 Rh2BG120800 Rh2BG303500 Rh2BG303600 Rh2CG122400 Rh2CG282000 Rh2CG333700 Rh2DG317100 Rh2DG626400 Rh3BG146300 Rh3CG112700 Rh3CG147200 Rh3CG292700 Rh3DG099400 Rh3DG147200 Rh3DG192700 Rh4BG351400 Rh4BG381400 Rh4CG161500 Rh4CG366000 Rh5BG310100 Rh5BG312200 Rh5CG112100 Rh5CG181600 Rh5DG168000 Rh5DG320700 Rh5DG322900 Rh6BG108100 Rh7AG309300 Rh7AG423300 Rh7CG443700 Rh7DG293000
rosa_wichuraiana	Rw0G013820 Rw4G017120 Rw5G034000 Rw6G008710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	410
AccIII	TCCGGA	1 cut(s)	183
AciI	CCGC	7 cut(s)	42, 85, 160, 197, 269, 346, 351
AclWI	GGATC	3 cut(s)	64, 283, 301
AcoI	YGGCCR	1 cut(s)	399
AcyI	GRCGYC	1 cut(s)	456
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	3 cut(s)	27, 183, 484
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	3 cut(s)	148, 235, 493
AluI	AGCT	3 cut(s)	148, 235, 493
Alw21I	GWGCWC	2 cut(s)	237, 435
AlwI	GGATC	3 cut(s)	64, 283, 301
Aor13HI	TCCGGA	1 cut(s)	183
AoxI	GGCC	6 cut(s)	12, 30, 190, 200, 270, 399
ApaI	GGGCCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	348
AspLEI	GCGC	2 cut(s)	278, 412
AspS9I	GGNCC	6 cut(s)	30, 115, 156, 191, 200, 201
AsuC2I	CCSGG	3 cut(s)	29, 137, 165
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	2 cut(s)	115, 156
BaeGI	GKGCMC	1 cut(s)	204
BanII	GRGCYC	2 cut(s)	204, 237
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	237, 435
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	458
BceAI	ACGGC	5 cut(s)	29, 263, 307, 377, 467
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BcnI	CCSGG	3 cut(s)	29, 137, 165
BfaI	CTAG	2 cut(s)	437, 468
BglI	GCCNNNNNGGC	2 cut(s)	266, 398
BisI	GCNGC	2 cut(s)	270, 349
BlsI	GCNGC	2 cut(s)	271, 350
Bme1390I	CCNGG	3 cut(s)	29, 137, 165
Bme18I	GGWCC	2 cut(s)	115, 156
BmgT120I	GGNCC	6 cut(s)	30, 115, 156, 191, 200, 201
BmiI	GGNNCC	4 cut(s)	116, 158, 201, 202
BmrFI	CCNGG	3 cut(s)	29, 137, 165
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	390
BpuMI	CCSGG	3 cut(s)	29, 137, 165
BsaBI	GATNNNNATC	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	163, 483
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 183, 484
Bse118I	RCCGGY	1 cut(s)	401
Bse8I	GATNNNNATC	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	163, 483
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	3 cut(s)	27, 183, 484
BseMII	CTCAG	2 cut(s)	222, 240
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	6 cut(s)	14, 32, 192, 202, 272, 401
BsiHKAI	GWGCWC	2 cut(s)	237, 435
BsiSI	CCGG	6 cut(s)	28, 102, 137, 165, 184, 402
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	3 cut(s)	27, 183, 484
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	6 cut(s)	14, 32, 192, 202, 272, 401
Bsp120I	GGGCCC	1 cut(s)	200
Bsp1286I	GDGCHC	3 cut(s)	204, 237, 435
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	4 cut(s)	69, 288, 306, 500
BspACI	CCGC	7 cut(s)	42, 85, 160, 197, 269, 346, 351
BspANI	GGCC	6 cut(s)	14, 32, 192, 202, 272, 401
BspCNI	CTCAG	2 cut(s)	223, 241
BspEI	TCCGGA	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	4 cut(s)	116, 158, 201, 202
BspPI	GGATC	3 cut(s)	64, 283, 301
BspQI	GCTCTTC	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	163, 483
BssMI	GATC	4 cut(s)	69, 288, 306, 500
BssNI	GRCGYC	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	483
BstACI	GRCGYC	1 cut(s)	456
BstC8I	GCNNGC	7 cut(s)	99, 142, 146, 267, 274, 403, 495
BstDEI	CTNAG	4 cut(s)	34, 208, 231, 249
BstDSI	CCRYGG	1 cut(s)	483
BstFNI	CGCG	1 cut(s)	410
BstHHI	GCGC	2 cut(s)	278, 412
BstKTI	GATC	4 cut(s)	72, 291, 309, 503
BstMBI	GATC	4 cut(s)	69, 288, 306, 500
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 275, 398, 407
BstSCI	CCNGG	3 cut(s)	27, 135, 163
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	335
BstV2I	GAAGAC	1 cut(s)	390
BsuRI	GGCC	6 cut(s)	14, 32, 192, 202, 272, 401
BtgI	CCRYGG	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	95
Cac8I	GCNNGC	7 cut(s)	99, 142, 146, 267, 274, 403, 495
CfoI	GCGC	2 cut(s)	278, 412
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	6 cut(s)	30, 115, 156, 191, 200, 201
CseI	GACGC	2 cut(s)	416, 445
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	4 cut(s)	74, 262, 298, 328
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	4 cut(s)	34, 208, 231, 249
DpnI	GATC	4 cut(s)	71, 290, 308, 502
DpnII	GATC	4 cut(s)	69, 288, 306, 500
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	235
Eco24I	GRGCYC	2 cut(s)	204, 237
Eco47I	GGWCC	2 cut(s)	115, 156
Eco53kI	GAGCTC	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	235
EcoO109I	RGGNCCY	2 cut(s)	156, 200
EcoT38I	GRGCYC	2 cut(s)	204, 237
FaeI	CATG	4 cut(s)	77, 265, 301, 331
FaiI	YATR	4 cut(s)	75, 263, 299, 329
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	4 cut(s)	73, 261, 297, 327
FauI	CCCGC	3 cut(s)	167, 190, 344
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	270, 349
FriOI	GRGCYC	2 cut(s)	204, 237
Fsp4HI	GCNGC	2 cut(s)	270, 349
FspBI	CTAG	2 cut(s)	437, 468
GlaI	GCGC	2 cut(s)	277, 411
GluI	GCNGC	2 cut(s)	270, 349
HaeIII	GGCC	6 cut(s)	14, 32, 192, 202, 272, 401
HapII	CCGG	6 cut(s)	28, 102, 137, 165, 184, 402
HgaI	GACGC	2 cut(s)	416, 445
HhaI	GCGC	2 cut(s)	278, 412
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	4 cut(s)	77, 265, 301, 331
Hin6I	GCGC	2 cut(s)	276, 410
HinP1I	GCGC	2 cut(s)	276, 410
HincII	GTYRAC	2 cut(s)	25, 340
HindII	GTYRAC	2 cut(s)	25, 340
HinfI	GANTC	3 cut(s)	17, 251, 471
HpaII	CCGG	6 cut(s)	28, 102, 137, 165, 184, 402
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	3 cut(s)	25, 340, 447
Hpy188I	TCNGA	5 cut(s)	119, 242, 250, 479, 509
Hpy188III	TCNNGA	3 cut(s)	184, 283, 468
Hpy8I	GTNNAC	3 cut(s)	25, 340, 447
Hpy99I	CGWCG	6 cut(s)	260, 284, 317, 341, 410, 461
HpyAV	CCTTC	3 cut(s)	4, 430, 474
HpyCH4IV	ACGT	2 cut(s)	336, 387
HpyCH4V	TGCA	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 275, 398, 407
HpyF3I	CTNAG	4 cut(s)	34, 208, 231, 249
HpySE526I	ACGT	2 cut(s)	336, 387
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	4 cut(s)	77, 265, 301, 331
HspAI	GCGC	2 cut(s)	276, 410
Kpn2I	TCCGGA	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	401
KroNI	GCCGGC	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	69, 288, 306, 500
LguI	GCTCTTC	1 cut(s)	483
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	437, 468
MaeII	ACGT	2 cut(s)	336, 387
MalI	GATC	4 cut(s)	71, 290, 308, 502
MboI	GATC	4 cut(s)	69, 288, 306, 500
MboII	GAAGA	2 cut(s)	395, 500
MhlI	GDGCHC	3 cut(s)	204, 237, 435
MlyI	GAGTC	2 cut(s)	26, 260
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	4 cut(s)	98, 105, 236, 353
MroI	TCCGGA	1 cut(s)	183
MroNI	GCCGGC	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	348
MspI	CCGG	6 cut(s)	28, 102, 137, 165, 184, 402
MspR9I	CCNGG	3 cut(s)	29, 137, 165
Mva1269I	GAATGC	1 cut(s)	425
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	4 cut(s)	266, 275, 398, 407
NaeI	GCCGGC	1 cut(s)	403
NciI	CCSGG	3 cut(s)	29, 137, 165
NdeII	GATC	4 cut(s)	69, 288, 306, 500
NgoMIV	GCCGGC	1 cut(s)	401
NlaIII	CATG	4 cut(s)	77, 265, 301, 331
NlaIV	GGNNCC	4 cut(s)	116, 158, 201, 202
NmeAIII	GCCGAG	1 cut(s)	40
OliI	CACNNNNGTG	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PctI	GAATGC	1 cut(s)	425
PdiI	GCCGGC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	471
PkrI	GCNGC	2 cut(s)	271, 350
PleI	GAGTC	2 cut(s)	25, 259
PpsI	GAGTC	2 cut(s)	25, 259
PpuMI	RGGWCCY	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	156
PspN4I	GGNNCC	4 cut(s)	116, 158, 201, 202
PspOMI	GGGCCC	1 cut(s)	200
PspPI	GGNCC	6 cut(s)	30, 115, 156, 191, 200, 201
PspPPI	RGGWCCY	1 cut(s)	156
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	237
SalI	GTCGAC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	483
SatI	GCNGC	2 cut(s)	270, 349
Sau3AI	GATC	4 cut(s)	69, 288, 306, 500
Sau96I	GGNCC	6 cut(s)	30, 115, 156, 191, 200, 201
SchI	GAGTC	2 cut(s)	26, 260
ScrFI	CCNGG	3 cut(s)	29, 137, 165
SduI	GDGCHC	3 cut(s)	204, 237, 435
SfaNI	GCATC	1 cut(s)	72
SinI	GGWCC	2 cut(s)	115, 156
SmiMI	CAYNNNNRTG	1 cut(s)	209
SsiI	CCGC	7 cut(s)	42, 85, 160, 197, 269, 346, 351
SspMI	CTAG	2 cut(s)	437, 468
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	3 cut(s)	27, 135, 163
TaiI	ACGT	2 cut(s)	339, 390
TaqI	TCGA	4 cut(s)	282, 339, 429, 459
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	471
TseI	GCWGC	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	2 cut(s)	10, 244
VpaK11BI	GGWCC	2 cut(s)	115, 156
XbaI	TCTAGA	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	2 cut(s)	437, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.