FvH4_2g30590

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002236
Physical Location & Seq
Forward (+)
23657659 .. 23658401
743 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30590.t1

Sequence Viewer

Length: 396 bp
ATGGCAGTCACTATGACGAAGATGTCTGTGCTTATTGGAGCGCTGGGTATACTTTCGTTTCTGTTTGGCATTCTCGCTGAAACTAACAAGCCTGCAGCTGGAGTTCCCATAATAGGGAGAGGCATGGTGATTTGCAAGTACCCGTCTGATCCAACCCTTGCCTATGCGTGGCTATCCTTTGGGTTTCTTTTGCTATGTTCTGTTGATAGTGGCTTCTCTATATTTTACAGCTACAAAGGCAGAAAAGCTCCCACATCTGTTTTCTTCCAGAGCACTAACTTCAACTTCTTCTTCACCATTACCCTGCAAGTCACACTAGCTCTCCTTCTCTCACACGAGTCATACTCGCGATCGAATGTGGATTCTCATTCTATCTTTGACTTGCATTTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

132

Amino Acids

14.36

Weight (kDa)

8.64

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 49
AccII CGCG 1 cut(s) 349
AclWI GGATC 1 cut(s) 143
AfaI GTAC 1 cut(s) 140
AfeI AGCGCT 1 cut(s) 42
AfiI CCNNNNNNNGG 4 cut(s) 98, 113, 114, 168
AgsI TTSAA 1 cut(s) 283
AluBI AGCT 5 cut(s) 98, 231, 248, 320, 392
AluI AGCT 5 cut(s) 98, 231, 248, 320, 392
Alw21I GWGCWC 1 cut(s) 275
AlwI GGATC 1 cut(s) 143
Aor51HI AGCGCT 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 139, 286
BauI CACGAG 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 107
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 44
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 329, 361
BpmI CTGGAG 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 113, 114, 168
BseLI CCNNNNNNNGG 4 cut(s) 98, 113, 114, 168
BseXI GCAGC 1 cut(s) 107
BseYI CCCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 349
Bsh1285I CGRYCG 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 275
BslI CCNNNNNNNGG 4 cut(s) 98, 113, 114, 168
BsmI GAATGC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 2 cut(s) 148, 350
Bsp68I TCGCGA 1 cut(s) 349
BspFNI CGCG 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 1 cut(s) 143
BssMI GATC 2 cut(s) 148, 350
BssNAI GTATAC 1 cut(s) 50
BssSI CACGAG 1 cut(s) 335
Bst1107I GTATAC 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 93
BstFNI CGCG 1 cut(s) 349
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 151, 353
BstMBI GATC 2 cut(s) 148, 350
BstMCI CGRYCG 1 cut(s) 353
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 93
BstUI CGCG 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 107
BstZ17I GTATAC 1 cut(s) 50
BtuMI TCGCGA 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 139
CviAII CATG 1 cut(s) 124
CviJI RGCY 8 cut(s) 91, 98, 172, 213, 231, 248, 320, 392
CviKI_1 RGCY 8 cut(s) 91, 98, 172, 213, 231, 248, 320, 392
CviQI GTAC 1 cut(s) 139
DpnI GATC 2 cut(s) 150, 352
DpnII GATC 2 cut(s) 148, 350
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 42
FaeI CATG 1 cut(s) 127
FaiI YATR 8 cut(s) 14, 50, 110, 125, 165, 196, 221, 343
FatI CATG 1 cut(s) 123
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 96
GsaI CCCAGC 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 44
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 2 cut(s) 338, 362
HphI GGTGA 2 cut(s) 139, 286
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 268, 348
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 335
HpyCH4V TGCA 4 cut(s) 95, 135, 307, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 148, 350
LmnI GCTCC 2 cut(s) 38, 253
LpnPI CCDG 5 cut(s) 29, 84, 105, 281, 317
Lsp1109I GCAGC 1 cut(s) 107
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 7, 310
MalI GATC 2 cut(s) 150, 352
MboI GATC 2 cut(s) 148, 350
MboII GAAGA 4 cut(s) 31, 256, 280, 283
MhlI GDGCHC 1 cut(s) 275
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 98
Mva1269I GAATGC 1 cut(s) 69
MvnI CGCG 1 cut(s) 349
MwoI GCNNNNNNNGC 1 cut(s) 237
NdeII GATC 2 cut(s) 148, 350
NlaIII CATG 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 7, 310
NruI TCGCGA 1 cut(s) 349
PctI GAATGC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 1 cut(s) 97
Ple19I CGATCG 1 cut(s) 353
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 43
PstI CTGCAG 1 cut(s) 97
PvuI CGATCG 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 98
RruI TCGCGA 1 cut(s) 349
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 148, 350
SchI GAGTC 1 cut(s) 347
SduI GDGCHC 1 cut(s) 275
SetI ASST 5 cut(s) 100, 233, 250, 322, 394
SfcI CTRYAG 1 cut(s) 93
SspMI CTAG 1 cut(s) 317
TaqI TCGA 1 cut(s) 353
TfiI GAWTC 1 cut(s) 362
TseFI GTSAC 2 cut(s) 7, 310
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 2 cut(s) 7, 310
XmiI GTMKAC 1 cut(s) 49
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.