Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002236

Physical Location & Seq

Genomic Coordinates Reverse (-)

68988375 .. 68989650

Gene Structure 1276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G039040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCAGTCACCATGAAGATTATGAGTGTGCTTGTTGCAGCACTGGGTATTCTTTCGTTTGTGTTTGGTATTCTCGCTGAAACTAAGAAGCCTCCAGCTGGAGTTCCCATAATAGGGAAAGTCATGGTGATTTGCAAGTACCCATCTGATCCAACGCTTGCTTATGCGTGGCTATCCTTTGGATTTCTTCTGTTATGTTCTGCGGTTGGTTGGTTCTCTATATTTTACAGCTACAAAGGCAGAAAAGCTCCCACATCTGTTTTCTTCCGGAGCTCTACCTTCTTCTCCTTCTTCACCATTACCCTCGCCACATGCCCAACTGCCAAAACTGGTGTTCTTGGCGGAGGAGCCTTCTTGTCCCTCAACTCATCGCTACTGTGGTTAGTTTGCTTCATCTTAGCTAGCAATGCAAGAGAAGACTACTTTGAAGACTTGGATAGTGTCGAAAAACCTAAACACGTTGAGAAAGCTGAAGCTGGACATACCACGGCACTTGAAGATGATTACAGCAGCGAGATTATCTCCCAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

177

Amino Acids

19.32

Weight (kDa)

6.71

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31130
fragaria_vesca	FvH4_2g30590 FvH4_2g30600 FvH4_2g30600 FvH4_2g30600
malus_domestica	MD08G1132500.v1.1 MD08G1132600.v1.1 MD15G1112800.v1.1 MD15G1112900.v1.1
prunus_persica	Prupe.1G463400_v2.0.a1
pyrus_communis	pycom08g11170 pycom08g11180 pycom15g10140
rosa_chinensis	RchiOBHm_Chr5g0063261 RchiOBHm_Chr5g0063271 RchiOBHm_Chr6g0312401 RchiOBHm_Chr6g0312411
rosa_laevigata	RLG00000010330 RLG00000035617
rosa_multiflora	Rmu_sc0005045.1_g000018 Rmu_sc0008363.1_g000024
rosa_roxburghii	Rroxscaffold_1G00017440 Rroxscaffold_6G00391270 Rroxscaffold_7G00156830
rosa_rugosa	Rorug05G0355700 Rorug06G0395500 Rorug06G0395500 Rorug06G0395500
rosa_samantha	Rh2CG573400 Rh5AG022300 Rh5AG415400 Rh5BG430200 Rh5CG453700 Rh5DG443800 Rh6AG512800 Rh6AG512900 Rh6BG523700 Rh6CG529100 Rh6DG515000 Rh7AG414600
rosa_wichuraiana	Rw5G039040 Rw6G044570 Rw6G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	267
AciI	CCGC	2 cut(s)	203, 342
AclWI	GGATC	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	140, 530
AfiI	CCNNNNNNNGG	3 cut(s)	98, 113, 114
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	2 cut(s)	428, 497
AluBI	AGCT	7 cut(s)	98, 231, 248, 273, 401, 470, 476
AluI	AGCT	7 cut(s)	98, 231, 248, 273, 401, 470, 476
Alw21I	GWGCWC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	38, 510
AsuHPI	GGTGA	2 cut(s)	139, 286
AsuNHI	GCTAGC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	275
BbsI	GAAGAC	2 cut(s)	423, 435
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	50, 522
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	504
BfaI	CTAG	2 cut(s)	402, 532
BisI	GCNGC	2 cut(s)	39, 511
BlsI	GCNGC	2 cut(s)	40, 512
BmcAI	AGTACT	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	349
BmrI	ACTGGG	2 cut(s)	53, 520
BmtI	GCTAGC	1 cut(s)	405
BmuI	ACTGGG	2 cut(s)	53, 520
BpiI	GAAGAC	2 cut(s)	423, 435
BplI	GAGNNNNNCTC	1 cut(s)	506
BpmI	CTGGAG	2 cut(s)	78, 120
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 113, 114
Bse1I	ACTGG	3 cut(s)	48, 334, 526
Bse3DI	GCAATG	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	486
BseLI	CCNNNNNNNGG	3 cut(s)	98, 113, 114
BseMI	GCAATG	1 cut(s)	412
BseNI	ACTGG	3 cut(s)	48, 334, 526
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	2 cut(s)	50, 522
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	3 cut(s)	98, 113, 114
BsmFI	GGGAC	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	203, 342
BspEI	TCCGGA	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	349
BspOI	GCTAGC	1 cut(s)	405
BspPI	GGATC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	3 cut(s)	48, 334, 526
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	159, 403
BstDEI	CTNAG	2 cut(s)	84, 397
BstDSI	CCRYGG	1 cut(s)	486
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 407
BstNSI	RCATGY	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	50, 522
BstV2I	GAAGAC	2 cut(s)	423, 435
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	159, 403
Csp6I	GTAC	2 cut(s)	139, 529
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	3 cut(s)	13, 124, 312
CviQI	GTAC	2 cut(s)	139, 529
DdeI	CTNAG	2 cut(s)	84, 397
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	275
FaeI	CATG	3 cut(s)	16, 127, 315
FaiI	YATR	9 cut(s)	14, 23, 110, 125, 165, 196, 221, 313, 483
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	3 cut(s)	12, 123, 311
Fnu4HI	GCNGC	2 cut(s)	39, 511
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	39, 511
FspBI	CTAG	2 cut(s)	402, 532
GluI	GCNGC	2 cut(s)	39, 511
GsuI	CTGGAG	2 cut(s)	78, 120
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	3 cut(s)	16, 127, 315
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	2 cut(s)	139, 286
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	268
HpyAV	CCTTC	3 cut(s)	289, 298, 361
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	3 cut(s)	38, 135, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 407
HpyF3I	CTNAG	2 cut(s)	84, 397
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	3 cut(s)	16, 127, 315
Kpn2I	TCCGGA	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	3 cut(s)	253, 270, 347
LpnPI	CCDG	6 cut(s)	29, 84, 108, 281, 315, 462
Lsp1109I	GCAGC	2 cut(s)	50, 522
MaeI	CTAG	2 cut(s)	402, 532
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	8 cut(s)	28, 179, 256, 274, 283, 428, 440, 509
MhlI	GDGCHC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	4 cut(s)	102, 314, 338, 371
MroI	TCCGGA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	237, 407
NdeII	GATC	1 cut(s)	148
NheI	GCTAGC	1 cut(s)	401
NlaIII	CATG	3 cut(s)	16, 127, 315
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	7
NspI	RCATGY	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	40, 512
Psp124BI	GAGCTC	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	140, 530
RsaNI	GTAC	2 cut(s)	139, 529
SacI	GAGCTC	1 cut(s)	275
SatI	GCNGC	2 cut(s)	39, 511
Sau3AI	GATC	1 cut(s)	148
ScaI	AGTACT	1 cut(s)	530
SduI	GDGCHC	1 cut(s)	275
SsiI	CCGC	2 cut(s)	203, 342
SspMI	CTAG	2 cut(s)	402, 532
SstI	GAGCTC	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	378
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	444
TatI	WGTACW	1 cut(s)	528
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	38, 510
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	29, 382
TspRI	CASTG	1 cut(s)	48
XceI	RCATGY	1 cut(s)	315
XspI	CTAG	2 cut(s)	402, 532
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.