Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005045.1

Orthogroup ID

OG0002236

Physical Location & Seq

Genomic Coordinates Forward (+)

47279 .. 48552

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005045.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggcagtcaccatgaagattatgtgtgtgcttgttgcagcactgggtattctttcgtttgtgtttggtattctcgctgaaactaagaagcctgcagctggagttcccataatagggaaagtcatggtgatttgcaagtacccatctgatccaacgcttgcttatgcgtggctatcctttggatttcttctgttatgttctgcggttgcgacgcatcatcacccaaattataacattactgggaatcaagacccccacagcgccacatgcccaactgccaaaactggtgttcttggcggaggagccttcttgtccctcaactcatcgctactgtggttagtttgcttcatcttggctagcaatgcaagagaagactactttgaagacttggatagtgtcgaaaaacctaaacacgttgagaaagctgaagctggacataccacggcacttgaagatgattacagcagcgagattatctcccagtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

162

Amino Acids

17.42

Weight (kDa)

5.58

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31130
fragaria_vesca	FvH4_2g30590 FvH4_2g30600 FvH4_2g30600 FvH4_2g30600
malus_domestica	MD08G1132500.v1.1 MD08G1132600.v1.1 MD15G1112800.v1.1 MD15G1112900.v1.1
prunus_persica	Prupe.1G463400_v2.0.a1
pyrus_communis	pycom08g11170 pycom08g11180 pycom15g10140
rosa_chinensis	RchiOBHm_Chr5g0063261 RchiOBHm_Chr5g0063271 RchiOBHm_Chr6g0312401 RchiOBHm_Chr6g0312411
rosa_laevigata	RLG00000010330 RLG00000035617
rosa_multiflora	Rmu_sc0005045.1_g000018 Rmu_sc0008363.1_g000024
rosa_roxburghii	Rroxscaffold_1G00017440 Rroxscaffold_6G00391270 Rroxscaffold_7G00156830
rosa_rugosa	Rorug05G0355700 Rorug06G0395500 Rorug06G0395500 Rorug06G0395500
rosa_samantha	Rh2CG573400 Rh5AG022300 Rh5AG415400 Rh5BG430200 Rh5CG453700 Rh5DG443800 Rh6AG512800 Rh6AG512900 Rh6BG523700 Rh6CG529100 Rh6DG515000 Rh7AG414600
rosa_wichuraiana	Rw5G039040 Rw6G044570 Rw6G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AciI	CCGC	2 cut(s)	203, 297
AclWI	GGATC	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	2 cut(s)	140, 485
AfiI	CCNNNNNNNGG	3 cut(s)	98, 113, 114
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	2 cut(s)	383, 452
AluBI	AGCT	3 cut(s)	98, 425, 431
AluI	AGCT	3 cut(s)	98, 425, 431
AlwI	GGATC	1 cut(s)	143
ApeKI	GCWGC	3 cut(s)	38, 95, 465
AspLEI	GCGC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	139, 212
AsuNHI	GCTAGC	1 cut(s)	356
BbsI	GAAGAC	2 cut(s)	378, 390
BbvI	GCAGC	3 cut(s)	50, 107, 477
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	459
BfaI	CTAG	2 cut(s)	357, 487
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	264
BisI	GCNGC	3 cut(s)	39, 96, 466
BlsI	GCNGC	3 cut(s)	40, 97, 467
BmcAI	AGTACT	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	304
BmrI	ACTGGG	3 cut(s)	53, 249, 475
BmsI	GCATC	1 cut(s)	223
BmtI	GCTAGC	1 cut(s)	360
BmuI	ACTGGG	3 cut(s)	53, 249, 475
BpiI	GAAGAC	2 cut(s)	378, 390
BplI	GAGNNNNNCTC	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 113, 114
Bse1I	ACTGG	4 cut(s)	48, 244, 289, 481
Bse3DI	GCAATG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	98, 113, 114
BseMI	GCAATG	1 cut(s)	367
BseNI	ACTGG	4 cut(s)	48, 244, 289, 481
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	3 cut(s)	50, 107, 477
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	3 cut(s)	98, 113, 114
BsmFI	GGGAC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	203, 297
BspLI	GGNNCC	1 cut(s)	304
BspMAI	CTGCAG	1 cut(s)	97
BspOI	GCTAGC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	4 cut(s)	48, 244, 289, 481
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	93, 159, 358
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	441
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 362
BstNSI	RCATGY	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	50, 107, 477
BstV2I	GAAGAC	2 cut(s)	378, 390
BtgI	CCRYGG	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	93, 159, 358
CfoI	GCGC	1 cut(s)	263
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	139, 484
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	3 cut(s)	13, 124, 267
CviJI	RGCY	7 cut(s)	91, 98, 172, 305, 356, 425, 431
CviKI_1	RGCY	7 cut(s)	91, 98, 172, 305, 356, 425, 431
CviQI	GTAC	2 cut(s)	139, 484
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	447
FaeI	CATG	3 cut(s)	16, 127, 270
FaiI	YATR	9 cut(s)	14, 23, 110, 125, 165, 196, 231, 268, 438
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	3 cut(s)	12, 123, 266
Fnu4HI	GCNGC	3 cut(s)	39, 96, 466
Fsp4HI	GCNGC	3 cut(s)	39, 96, 466
FspBI	CTAG	2 cut(s)	357, 487
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	3 cut(s)	39, 96, 466
GsuI	CTGGAG	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	264
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	3 cut(s)	16, 127, 270
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	1 cut(s)	244
HphI	GGTGA	2 cut(s)	139, 212
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	248
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	4 cut(s)	38, 95, 135, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 362
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	3 cut(s)	16, 127, 270
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	6 cut(s)	29, 84, 105, 225, 270, 417
Lsp1109I	GCAGC	3 cut(s)	50, 107, 477
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	357, 487
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	5 cut(s)	28, 179, 383, 395, 464
MluCI	AATT	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	2 cut(s)	293, 326
MspA1I	CMGCKG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	267, 362
NdeII	GATC	1 cut(s)	148
NheI	GCTAGC	1 cut(s)	356
NlaIII	CATG	3 cut(s)	16, 127, 270
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	7
NspI	RCATGY	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	40, 97, 467
PsiI	TTATAA	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	140, 485
RsaNI	GTAC	2 cut(s)	139, 484
SatI	GCNGC	3 cut(s)	39, 96, 466
Sau3AI	GATC	1 cut(s)	148
ScaI	AGTACT	1 cut(s)	485
SetI	ASST	5 cut(s)	100, 409, 417, 427, 433
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	93
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	2 cut(s)	203, 297
SspMI	CTAG	2 cut(s)	357, 487
TaaI	ACNGT	1 cut(s)	333
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	1 cut(s)	399
TasI	AATT	1 cut(s)	226
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	1 cut(s)	244
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	3 cut(s)	38, 95, 465
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	29, 337
TspRI	CASTG	1 cut(s)	48
XceI	RCATGY	1 cut(s)	270
XspI	CTAG	2 cut(s)	357, 487
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.